LOC103042318 (LOC103042318,LOC108423523)


Basic Information

Item Value
gene id LOC103042318
gene name LOC103042318,LOC108423523
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27855741 ~ 27858741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257377.2
GTGCcttatattaaatgttattaagaCAATTACTCAATCATTCCCTGTGATTTGTTTTGGATTAAACTTGCTGTCTGGACCTCCCCATGTTTAAACATCCAATTGTTAATAGATAATCCTCAGGGCTCACTTGCACTTTGTTTCTCCAAACATCGGGAACAGACCAGACTGAAACACAATCTTTACCTGGTGTTTATTGATCAAACCTTGAAAGAAGATTATCATGACGATGATGGAGTACAGAGTGCTGCTGTtcctttttatttgtgtttcctTTTTCAAGTCTAGCCTCCAGACTCAGGAAACTCCTAACATCACTGATCTGACCTTTAAGAATATAGACTTTGCCATGAACCTTTATCGTAAGATTTCAAGCCAGCACGACAACAACATTTTCTTCTCGCCGCTGAGTGTTTCCACAGCATTCGCCGCACTATCTTTGGCAGCCAGGAACTCCACTCGCAGCCAAATCCTGTCAGGGCTGAATCTGGACACGCTGGAGCAGAATGGGCAGCCTGAGCTCATTCCTCAGCTCTTCCAGCACCTCCAGGGGAACATCACCCATGACGGAGCGCTGAAACTGGACCAGGGAACAGCACTCTTCGTGGACCTGCATTTCCAAATAGAGAGGGCTTTCAGTGATCAGATCAAAAAGTTCTTTGATGCTGATGTCGAAAACGTGGACTTTGGTAAAGCTGACATCAGTAAGGAGACAATTAATAAACATGTGAGGAAGAAAACTGGGGATAAAGTGAAAGAGATAGTGTCCAGCATTGAACCCCTGACTCAGATGATGCTGATcaataccattttttttcagGGTGCCTGGGAGAGACCTTTCAACCCAAACAACACTGAAAAAAGTCGCTTTTATATAGACAAATATAATATTGTCCAGGTGCCAATGATGTTTAGTACAGATAAGTTCTACATTGCCAGTGATGACGAGCTCAAGGCTAAGGTGTTGCGTCTGCCCTATTTGGGTGGCGCAGCTATGCTCATTGTCCTTCCTGACAGCAATGTTGATTATACCATCATAGATGATGAAATAAATGCTGAGAGGTTTCTAAACTGGATCAAGAACCTGAAAAAAACAAAACTGGAAGTCTACATACCCAAATTTAAATTGGAACAGTCATATTCTTTGCACAAGATTCTTCCATCCATGGGAATTCAGAATGTCTTCACATACTCGGCTAACCTCAAAGGCATGAGTCAGGAATCTGGTATAAAAGTCTCACAGGTTCTGCACAAAGCTGTGATTGAAGTGGACGAGAAAGGCACTGTAGCTGCAGCAGCAACAACCGTGGGAATCACTGCATACTCTATGCCGACTACCTTCACTGTGAACAggcctttcttcttctttatatACCATGAAGCAACCAACAGTCTGCTCTTCATGGGCAGAGTGATTGACCCCACAAAGTACTGAATCAGCCAGTGCTGCCATCTCATCGTGCCCTGATAAGAATCAGTTATTTTTCAGCTCTGATCATGTTCACTTCTGTCTTCTCTGGGATTAAAACTAATATCCATATTA

Function

NR:

description
protein Z-dependent protease inhibitor-like

GO: NA

KEGG:

id description
K04525 SERPINA; serpin A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257377.2 True 1543 mRNA 0.43 5 27855741 27858741

Neighbor

gene id symbol gene type direction distance location
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding upstream 359 27848677 ~ 27855382 (+)
spred1 spred1 coding upstream 41833 27770793 ~ 27813908 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding upstream 349450 27428752 ~ 27506291 (+)
stxbp6 stxbp6 coding upstream 958673 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 1139726 26693418 ~ 26716015 (+)
ddx24 ddx24 coding downstream 1453 27860194 ~ 27869973 (+)
LOC103042002 LOC108423517 coding downstream 22287 27881028 ~ 27894983 (+)
LOC103041699 prima1,LOC108423434,LOC108270468 coding downstream 48085 27906826 ~ 27921173 (+)
LOC103040475 LOC108423515,LOC108269951 coding downstream 151773 28010514 ~ 28072594 (+)
ttc8 ttc8,LOC106591546 coding downstream 220832 28079573 ~ 28085275 (+)
LOC111193235 LOC103459065 non-coding upstream 9775 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 150860 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 240174 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 586510 27268958 ~ 27269231 (+)
G83824 NA non-coding upstream 611473 27243756 ~ 27244268 (+)
G84001 NA non-coding downstream 64328 27923069 ~ 27923358 (+)
G84164 NA non-coding downstream 442992 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 470034 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 515207 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 728655 28587396 ~ 28587954 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 24157 27824256 ~ 27831584 (+)
fam98b NA other upstream 33530 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1078253 26727823 ~ 26777488 (+)
spata7 NA other upstream 1456474 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1528403 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 1111523 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1140761 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1182238 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 1184476 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 1213150 29071891 ~ 29078898 (+)

Expression


Co-expression Network