otub2 (otub2,ddx24)


Basic Information

Item Value
gene id otub2
gene name otub2,ddx24
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27865545 ~ 27873706 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257379.3
ttccagTGAAGCCTTTTCATAACATTACATAGCTGTATATAGCATAGCTGTTAGCCCATTTACCCTTTTCATTTGCACTCGCTCGCTTGCTTTGCCCTCTAGCGGTCATTGTCTGATATTACGGCTGAGAAAGAAAGCTCTGTTTAAATGCCCCTCTGTCTCTTTAAACGGAAGACACGTGGTTGCTCCAAACATCCGGTATCCGCGACTACAATTCTTACTTTCATGTGTAAATTTTCTAGAACGCAGCTCGCGCCGCTTCAAAGggtatgtaaatgtaaacagtTGCTTTGGGTCGTCGCGTGGCGGGAGACTGGACGCTTCGAAATGTTTTGTctgaaccaaactgaaaacagaCCTGCGTTTAGCCCACTAGCGCAGCTCACAACGCCGAGGACAGCAAACAAGATGGAGGAGTCCAGATTAGTCTCAAACAAAGAGGCACTTTCAGCTGAAATACTGGAACCGTCCGAGGAAACAAAATACCAGGACTTTTGTCAACAGTTTGGATTCATTCGCAGAGTAAAAGGAGATGGAAATTGTTTTTACAGAGCTCTGTGCTTCAGACTTGTAGAAACATTGATGCATAATGGAAGTTCTGTAAGGAGAATTAAGGATCAACTCCTACGAAGCAATGAAGACCTCGTAAGAGCAGGGGTAGAAGAAGGTGAATTTAAAGAGCTCATCGGCACATTTCTCAGGGTCCTAGATCAGCTTGAAGCAGATGACTGTGAAGAGACTCTTCTGGGGTTTTTCAATGATCACACTACCTCAGACAGCATGGTGAAGTATTTGAGACTCCTCACCTCCGCACACTTGCAGAACCATGCAGATTTCTTCCAACACTTTTTGGAAGCCCCTAACCTTAAAGCTTATTGTACTCAgGAAGTAGAAGCCATGGCGATGGAGTGTGACCATGTGGAGATTCTGGCTTTGTCTGAGGCACTGGACATTAGTTTGTGTATCATATCTATGGACAGCAGTGATGGCCACCTTGTGTACCACACCATTCCAGAGGGGTCTGAATGTTCCATATACCTTCTCTACAAGACCTCTCACTATGACATTCTCTATAAGCATAGAGAGCACTGAAAATAGGGCTTGGACCACCACCActtcggtaaaaaaaaaaaaaaattagatacaCAAAACATAGTTTTCAAAACAGTAGGAAAATTGTTTGCTTAATGGCATTTTCTATACACAGGACAAAaactttttgacatttttacacaaatccCATATATCCAATTCTGTTTAATATTCCAAATGTTACAGTTTACGcttttgctgctgtttttgtttacGCTGTTGATTGGTCAAACTGCTTAATGCTGTTTCACTGGCCAGGGGTAACTCTGGCAGCTGCAGCCTGCCCATCTGAGTCGGGTATTTTGTCTGCATGTGGGGTTTGAAGACTGGTTGGCTGAGCAGGTGCTTCAGGTGTTTCTTCATGCCTTTCACTAGCTTCTGTTGGTCCCGgtcctctctctcatctcttccACCTCCTGTAAGTGAAATAATGAATTAACTTACTTCTTGAAAATAATTATAGAAGCTCATGCATATGCCATCTTATTTAACCTGACAACATAGAATGTTCTGGGGACCCATGCTCATGCATGAATTTACCctacttttaaaacacttttacttttaaattaagaaCATAAGATTCTTTTTATGTAGCTAACAGATTTTCTCAAGAAAACAAATGTACATAGTGTGGTGTTCCTGGaacaagaataataaaaataaataataataataataataataataataatgagtaaTACAAACCCATAAGCAAATCATCATCTACGTCTATATCCATTTCCTCTGCTGCTTGCCTCAACCATGAATTGTGCTGCTTTGCTCGGCTGTTGTGGTATTCAATTTTCTCAATGCCCCTGGCTACGTTAACCCGTTCCTGTTAAATTAATCAATCACATCAAATTAATgcggagagaaaaaaaaaaaaacatttcaatggGTCAGTTTCTCTGACAGGAATTACACCTAATTGTGGagtatattttcctttcagtagaaaacctacattcaaaatactGGGTAGTCTAAGGACCAATCACGTTTCTTTCCTTCCCTTTCCCCTTGAAACAGAATTAAGCCCTTTTCTTGTTGCTTGTGCCACCATCTTGCAAGTGCTTCTCAACCCTCTGTTTTCAGTGtgcctaaaaaaaaactgttttaaggGCTATTTGCCTCTAACACTGCCCCTTTAGCCTAAGGCGTGAAATAGGATTTGGCCttaaactaggcttaatcacACTCAGAGAAACTGCCCACAATGCATAATTTACAGAAATACAAATTTCCCATACCTTAATTGCAGCCATGCATTTGTTCTGAATAGGAAACACTGGAAGATCCTCGTCTTTCCCCAGAGTCTTGTAGATCTTCTTAAAGTTGATCATATCATCTGGCCCAATCAGAAGCAAACTGAGACCCTCTTTAGCAGCACGAGCTGTACGTCCACTACGATGGACGTAAGTCTCAGATGTCCGTGGAACCTatttataacaaaaacaaacctaTAAAGTaatctattcatttaaataacaaaacatatatggctgtgttcacattaccaggctgaagtgatttAAATCTGACCTTTTGCCTTAATGTGAAAcaggtaagatttttttttcaaggctGATTGGACATGccaaatacaaaacataaaaaatcagatttgatacACATCTGCGTTGTAACATCTGCATGCAACACAACTTTAAAGAGTCAGATCCAAATTCATGGGACTCCAAACTTGTGGTCAAATTATTGtttcaaaaaacatttaaaaatcactAACAAAATCTGATACCCTCATATAATTTGCAGCATTTGGCTCtttaatgtgcaaaaaaaaattgttatattGTTCTGGCTACAGCACATCAAGGGTGCTGTAATAAGGGAACTTATTTGTAAACCTAATGACCTGCTGTGTGTTTTATGAACTCCTATTCATATTTGAACCAGTGActattaatctaatttataatGCCTCTACAAAGACAACGTACATAAATAATATGTGCATGCGTGCTGTTTTAGGGATAAATtctatacatttattaatgtagaccacaacaatagacaaatataatctgagcaaaaaatctgatttgattagCGACTGGTAATGTGAACAACATCTGTGAAAAAATAATACCTGATAGTGAAGGACATGCTGAACATCTGGAATGTCAAGCCCTCGAGCAGCAACATCCGTGGTAAGGAGGACACAACTGGTGAAAGATCAGAAAGCACAGCTGAAAAGCAAATATTTAAATGGGACAGTACAATGTGATATACATACAACTGCTTACGCTTCCTTTACCTCTCCCTCTCTGCAAATCTCTCCAGATTTTTCAGCCTCTGTTTCTGGTGCATGTTGGCATGCAGTGGTAGTGGGTTGCAGTCCAAAATAGTCAACAGCGACGTAAGCCTCTTTATGCAGTCAATGCTGTTGGCAAACACCATTGTGCGGCCAGGGTACTGCAGAAGAAAGTAGTAGAGATAGAAATCTTTCTCTTCCTTCTCACAGTGGATTTTGGTCTCAGTCAGCGTCTCTACTGTGGCCTCCTTGCGGCTGAGATCGATGATTTTAGGCTTGTTTTTGATTCCCACTTTTTCCATGAGGAGCTCCAGCTTGCTGcgctgctccagctgttttcCTTTCTTCCGTGCCAGGCGGGAAGGTAAACTGTGGACCATAGTCAGCGTGGCGGAGAACACAAAGGTCTGCCTCTTTGGGTTGAACTGGGATGTGCTGAGCATTTCCAGCAATTTCTCAAGCTCAGCAAAATGGCCTTTCTCCACCATGCGGTCAGCTTCATCAATGACCAGACACCTGAGCAAGTCAACAGGGACCATGTTAGGGATCAATATCAACATAATGTGCCTTTTGTGTCCATAGAACATGTTTTTCATTTCATACAAACATGTAACAAGATGGGTCAAGATTTATTATGTATGAACAAAttagtattaataaaaaataatgtaattttatttctttgatGTGGGGGTGGTTTTAAGTTTGTCGTCTTGTCAGTGTGTTGCAGTGCTGGTTATGTtgaatgatttatttaaaattctctttttattctttttttgtaattttcataaaaaataatcaaggTATTTAAACTTGTTACAGAGGTCTCTGTCCATCATGTCTTCCAGGGAACACCCTGCCCCTTTAATAAAGTAAACTTTGTCATCAGTAACATCA

Function

symbol description
ddx24 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX24 (DEAD-box helicase 24).
otub2 Enables thiol-dependent deubiquitinase. Involved in protein K11-linked deubiquitination; protein K48-linked deubiquitination; and protein K63-linked deubiquitination. Located in nucleus.

NR:

description
PREDICTED: ubiquitin thioesterase OTUB2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257379.3 True 4270 mRNA 0.40 6 27865545 27873706

Neighbor

gene id symbol gene type direction distance location
LOC111193234 NA coding downstream 230138 27632645 ~ 27635407 (-)
meis2 meis2 coding downstream 256903 27526742 ~ 27608642 (-)
dph6 dph6,LOC106512485 coding downstream 436744 27148597 ~ 27428801 (-)
aqr aqr coding downstream 725066 27079341 ~ 27140479 (-)
gjd2 gjd2 coding downstream 801711 27060524 ~ 27063834 (-)
LOC103043263 NA coding upstream 1442 27875148 ~ 27880315 (-)
fam181a fam181a coding upstream 21249 27894955 ~ 27897940 (-)
unc79 NA coding upstream 54848 27928554 ~ 27997121 (-)
LOC103039744 NA coding upstream 199153 28072859 ~ 28079529 (-)
LOC103037016 LOC103037016 coding upstream 212678 28086384 ~ 28090632 (-)
G84064 LOC103042318,LOC108423523 non-coding downstream 6385 27856275 ~ 27859160 (-)
G84063 NA non-coding downstream 10161 27853356 ~ 27855384 (-)
G84045 NA non-coding downstream 45681 27815850 ~ 27819864 (-)
G83973 NA non-coding downstream 160657 27704226 ~ 27704888 (-)
G83957 NA non-coding downstream 250837 27613245 ~ 27614708 (-)
G84083 NA non-coding upstream 124878 27998584 ~ 28005722 (-)
G84109 NA non-coding upstream 186311 28060017 ~ 28114357 (-)
G84107 LOC108423515 non-coding upstream 193510 28067216 ~ 28072498 (-)
G84197 NA non-coding upstream 392464 28266170 ~ 28267487 (-)
G84229 NA non-coding upstream 547278 28420984 ~ 28424692 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other downstream 17101 27830628 ~ 27848444 (-)
cga cga other downstream 1395382 26434472 ~ 26470163 (-)
G83612 NA other downstream 1861860 25992499 ~ 26003685 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other downstream 2824491 25034004 ~ 25041054 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 3229664 24630879 ~ 24635881 (-)
G84215 NA other upstream 470883 28344589 ~ 28356545 (-)
rps6kl1 rps6kl1 other upstream 801892 28675598 ~ 28694982 (-)
G84392 NA other upstream 1201770 29075476 ~ 29076115 (-)
G84579 nol10 other upstream 1934823 29808529 ~ 29810277 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other upstream 1985271 29858977 ~ 29930575 (-)

Expression


Co-expression Network