spred1 (spred1)


Basic Information

Item Value
gene id spred1
gene name spred1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27770793 ~ 27813908 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257384.3
CGTTAAACAACAAATCACGCTAGTTGATTCGGTCTAAAAATGAGTTTGCTGTTTTGTTAATGGTGTTTTATTCGGGTTTCGTCGCGGAAGGATTTCAGCGGAGAAGTCAGGCCAAACGCTTCCGCCCAGTTTTCCGAGGTGTGCATTGCCTGAGTTGAAAATGGAGTTCGTGTAGCAGCACAGATCTTCTGAACTTCCCGAGGAGGAGACTCTGTTAATCTCGCTATTTCTTTAACGCGAATTCGTTGGATACTCAATTAAGGACAGATATTTATCGTTTCGTTCGTTGTTTTTGAGTGCCTGCGCTCGAGCCAGCTAGAGAGTTATAAACAGGAGCAGCgctgttttgtgttttctagTGTTGGCTGAAACTTCAAGTTGccgtggggagagagagaaagagagagaggggagttATATAGTATAACGTAGCGTAGCTCGATCTCCAGCTAGCCGGCTCACGGACCGTGGCAGATTTAGCTAGTAGCTACCTATCTATTTCTCGCTTTGTTTTGCTTGCAATCTGAAGATCAGGACTGCAATTCTGTCTGGGATTTGCCTGTGTTCGCAGATCGAGGATGAAGAGGACAGCCACTCGTTTCCAAATGGATTTTACTCATCGGGAAGATAGAGATCAGTGGCTGCGGTCGCCGTTCTTATTCTGAACTCGCCTTGTGGGAGAAAACTGGAAGCATGCAGCGCCCCAGCGCTACACAGTTGCTttgtgattaataataaaacaaaaaaaaaactggcactTTCTTTTAATGCGAACGAAAAGAAAATGGTGATATTTGCGGATCGTTTCCCAGCCTTGACTGCGTCGTCGATGCTGTTTCCAGGATTTGGATCCCCGTGAGAAAAAAATGAGCGAAGAATCGGCAAATCCAAACAACGATGACAGTTATGCACGTGTGAGAGCAGTGGTCATGACTCGGGATGACTCCAGTGGCGGATGGCTGCCTCTGGGAGGCGGAGGCCTCAGCTGCGTGTCAGTCCACAAAGTCAGCCGGCCAGACACGGACAGCTCCAGCGGCGTGGATTTCCTCATCCAGGGGGAGCGTCTCAAAGACAAATCGGTTGTGCTGGAGTGTAACATAAAGAGGGACCTCGTCTACAACAAAGTCACCCCTATCTTCCACCACTGGAGGATTGATAACAAGAAGTTTGGACTGACTTTTCAGAGTCCAGCTGATGCTAGGGCTTTTGACCGGGGGATACGGCGGGCAATGGAGGACATTAAGCAAGGCTGTCCGGTGTACAGTGACTCAGACACTCCGGAAGATGGATTACAGGTTAATCAGGATCCCCCCTCCATCTGCACACCTATGAGAGAGCCCTTCTCCCCCCATGGCGGAGTGGTGTCCACCGAGCCTTTCCGAGGCTGTTATGTGCGTGCTCAGCCCTTCGATGAGTTCCCCAGCCCCAACCGCCGCTACCTGCCCCCCCAGGTCTCCTTTAACACCACACGCCACGTAAGCTTTCACATGGATGACGAGGAGGTGGTTCGCATTAACCCACGCAAGGACGTTCTTATCCGGGGCTATGAGGACTACCGTCACCCTGTCATGTGGAAGCAGGACATGGAGCGAGACGATGGAGATTTCTCCACCACCTTTTCCAAACTAGACAACAAGAAAAGTGAGTACTTGTTTCCGGAAGGGCCGGAAACTCACCCAGGCGGCAAGGACTCTATTAAAACCCAGCAACCCTCCCCTCTGCTCAAGTCCAAGAAGTCAAGGAGACGCAGGGAGGACGGTGAACGGTCGCGCTGCATCTACTGCCGCGAGATGTTCAACCACGAGGATAACTGGCGGGGTCAGTGCCAGGACGCGCCAGACCCCATAAAGCAGTGCATATACAAAGTCAGCTGCATGCTGTGTGCCGAGAGCATGCTTTACCACTGCATGTCTGACTCGGAGGGCGACTTCTCGGACCCGTGCTCTTGCGACACCAGCGAAGAGCAGTTCTGCTTGCGCTGGCTGGCCCTGCTGGGTCTGTCCCTCATTGCGCCGTGCATGTGTTGCTACCCTCCCCTGCGGGCCTGCCACCACTGCGGAGAGGCCTGCCACTGCTGCGGGGGGAAGCACAAGGCCGCCGGATGAGTCCAGCCACGCCATCCCAACTACACCAACGGCCACGTGGAAAACCGCCggcattgtttttttcattcaccTTCAGGCAGGTGAGGTGTTCTCCCACCCGCCGCTGGAGGCTTTGGAGATTTGATTTGGCTGAGAGCAGCGGAAGCAGACACCCGTCAGGTGGTCTTCTCGGGCTCTCGAGAGCTGCGGCACGGAGCTCATAACATGAGGAAAGGCGTTTACAAAAATGAACTTGGAGAGATCACTAAACactcaaacatgcaaaaaaaaaaaaaagaaaatggaaaaaaaaaatcacacaacatagaaaaaaaacaagtcacCATGTCTCAGACTGTCATTACAGATATTGTGTAACCTTTGTGAAGGAATATTATTGTCTTTTGTACAGAGATCAAATCtataacaaagaaaacaaaacatttggttGTGCATACAGAGGCTCTGCTGTATGGGTATGCTAAAAGGGATATTTTCTTGCTTTTCGTGAATTTGCAGTAGGGTAAAAGTGGCCTTTTCTTTCGACTTGAGCATTTGCTGACCGTGTAATTatagacaaaaacaacaaaaagtgcACTAGATATGTTCTCCCATGAAAGGTAATCCTCATTAATTCTAATGGTACATTTaacgaaaaaagaaaaacactttgatcaagttttaggagttcagattgattttgttttctgtgatgGGTGTGTACGCAGTTTGTTTTACCTGCTtttctttcattgttttgtAAAAGACAGTAACGTCATTTCTTTTTTGAAATGCTAGTGTGACATAATGAATTTTGTAATGAATTGtgctaatgtttaaaatgacacCTTTCTCGTGTAATTGGCAAAACTATTCGGACCACACGAGTCGGTTTCCTCATTCCCGCATACAGTGGTTGTGGTACGACAGCTGTGGTATATGAAGTTCTTTATTCCCAGGTCAACAAACATTTTCCACAATAAGATTGATGGTGATATCTTGCAATCTAGTCAGAGACCAATTGCAGAAATTTGCAGACTTTTTTCCCCTTTCAACTTCTCAATTTAATTGCATTTGTCAGAGTGAAACTGGGTTCTTTTcggcttttaattatttttgagcTGAAATTGTGCTCAACCAgcaagtttttcttttttttttttttattgactgacaatattttacaaattcTTACGATCATGGTTAAAGGGTGTCCATTTTTCATTGTTAAACAAGGCACTTATATTGCGTTTTAAATAGGATAACCCTGTATTATTTGGTTGGATTGTTCTTCGTACAAAGCACCCCTCAAAGAAGCACTAATTTCCAAGCTTTGGTTACAGCTCCATCTACACATGTATTCCATACAGCATGTAGTTTATTTGtacttatttctttctttctgtctttgtttGGAGAGCTTGTGTAAATGAAATTCTTGATGCCAGAccgtttataaaaaaaaaaaaaagagcccaCGCAAACCTCAAACCACATCCCACATGCAAACCTCCCGAACACAAAACTGCCACAGCAAAGATGATGATAAATCATGTCAGTCAGTAACTATAATTCAAAAGGATTTTGaagattttgtttttaactAGAGAAAAGAATTCATGTGTTTGATTAAGCTCGGCCTTTCGCATTCACAAAGCATTAAGAAACTCAGTTGAACGTCAGGCAGTTTAGCCCTGGGTCCAGTCTACACTAAAAGGTTTATCACACAAACAAAAGCAAGCTTATATTCCTGTTAGCAGGAAAATCGCACCCACTATACTACTAAGAGGCCAGTATAAAAAAGCAGTCCCAGTAAGACCTGTCCTGCATATCTCCCTATGCTCTGTACAGCTACACTTTACATCCACTTTACTTTCTATGCAACTATTTCCATGAGAAACACTTAGACCTCTTCATACCAGTCTGTGATGTGACACTTTAATATAGCAGATGTTAAACTTGGTACCAaacttgagtaaaaaaaaaaaaaaaccctatgtAAATACATAACACTATATTTAAGCAACAATAATAATCCCATTCAAATTTTTAAGAGAGAGTTGTATTTATCACCGCTGTCAGTATATATTATAGCTTGAGTTTGACAGCATTATGTACATAGGTCACCTTTTAGTATTATTTCACATTGAAAGTAGAGGGAGTACATGATGAAAATGGTTGGGCTTTTAATAGAGATTCTCTCTAGTTTTGTATTGCAAAAAGAAGGCTAGGAAGCTAATGCGGTATAATAGTGACAGtccatttttaaaaggttttgtcATATGAAGCTGCTAGAAACAATCACTAATTTTGCATTGAGAGGATAAATAAAATTCAGATATGGATGACTGTTAAAACATTATATAGTTCtttgatatataaatatatataatattgatcTCAGTTGTGTTCTTTGATCTGTTTTTtcgttgtttgtttttgttttgtttttaaacacacccatgtTTTTATGTTCATCCACTCCTTCTTTATTTACGTCTTTCCTGTATTGTCATTGGATTGCATTTTGTATTGCAAGCTGAACCAAGGTTTGATTAAAACCTTAACAAAACTTGCTGGCTGAGAAGCAAATTGTAGAATAGGCTACATTCATACGATTCTATCGTTAGACGAATACTAATAATACCTAGTTTCATTCTGCGTTGACCAGCACAGGGCGACCACATGTAATGTGCTGTATTTAATATGCAACctgtctgttttctttcttaccTTCCATTCTCTCTCCACCCGGCCATTAACTTAGCATTTATCTGTCTTCAGTTTTAACCACTTGCTGCTAGTGTatcgtttttattattatgatttttttggaCATTGTGCATAACTCTGGAATGCATAAAAGATGAACATTCTTTACTGTTTAGTTTAGAAGAATTGCGTATGTAAATGAGTCATTTCAGTGTGATCTAAAAAAACAGCTACTTTCGCAGCAGTTCAGTGGTTTCTTTGGAGTTCTCCGATGCTTTGGTGCACTGATGTATGTAGCTAGGCTTTTTTCCTTTGCATAGCGCTTGATGATGTAAAGCTCACGTGATTAGTTCTAAgttgtgaaaaacatttgtgtttatGGTAATTGCAGTATAAATGGTACTCTGATGATTCCAGTATGAACACTGCCTGTTTCTTTATCTGCATCTCTAAGTTTTAGTGCCATTGGCTTCACCCACTGACAACCTCGAAAAAGTGCCTCACGTCCATCATAATTTCCATCCGAAAACTTAACAGCTCTTGCTATGGTTGTATTGGTTTATACACGTCTAGGTATTTGTATCATGGTTTGAAAATACCAAGTAtatgatgtaatatttatagTTCAGTAACTCATGTCATAGTTGTATTTTCTTTATACAGATGTAGCTTGTTACGtttcataaatatataatgtaaatatgcaTACAAATGTTTGTAACTGTTTTTATGTTACATCATACACTTGTAATTtgacataaaataacattaccaTAATAAAAGGTGAGTTTTAA

Function

symbol description
spred1 Predicted to enable protein kinase binding activity. Acts upstream of or within blood vessel morphogenesis; lymph vessel development; and regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in membrane. Orthologous to human SPRED1 (sprouty related EVH1 domain containing 1).

NR:

description
PREDICTED: sprouty-related, EVH1 domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257384.3 True 5590 mRNA 0.42 6 27770793 27813908

Neighbor

gene id symbol gene type direction distance location
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding upstream 264502 27428752 ~ 27506291 (+)
stxbp6 stxbp6 coding upstream 873725 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 1054778 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 1157029 26604718 ~ 26613764 (+)
snx14 snx14 coding upstream 1264281 26488033 ~ 26506512 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 34769 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 41833 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 46286 27860194 ~ 27869973 (+)
LOC103042002 LOC108423517 coding downstream 67120 27881028 ~ 27894983 (+)
LOC103041699 prima1,LOC108423434,LOC108270468 coding downstream 92918 27906826 ~ 27921173 (+)
G83972 NA non-coding upstream 65912 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 155226 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 501562 27268958 ~ 27269231 (+)
G83824 NA non-coding upstream 526525 27243756 ~ 27244268 (+)
G83805 aqr,LOC108423414 non-coding upstream 630396 27133975 ~ 27140397 (+)
LOC111193235 LOC103459065 non-coding downstream 18069 27831977 ~ 27845966 (+)
G84001 NA non-coding downstream 109161 27923069 ~ 27923358 (+)
G84164 NA non-coding downstream 487825 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 514867 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 560040 28373948 ~ 28374517 (+)
fermt2 fermt2 other upstream 993305 26727823 ~ 26777488 (+)
spata7 NA other upstream 1371526 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1443455 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 1465410 26275001 ~ 26305383 (+)
G83602 NA other upstream 1517191 26235498 ~ 26253602 (+)
fam98b NA other downstream 1897 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 10348 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 1156356 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1185594 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1227071 29040979 ~ 29041607 (+)

Expression


Co-expression Network