LOC103030701


Basic Information

Item Value
gene id LOC103030701
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26357779 ~ 26360746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257433.3
CCAtatggaattagttttaactgGTTATTTATAAGTGAGAACAGATGCAGGGCTGGATATTATAAGAATATTATAAACTGCCATTTTATGTTAGTGTTATCCTCTGATGacccaaaaccaaaaaaatgtcaTGGCTACAAAGTCATTCTCAATGAACATCATCGTATTCCCCAACCAATTACTACCATTTCTCATTCTGAATGGCAGCCAGAAATGTGTTGCACTGctgaacaaaaatatttcaCCCACTGGCGTGTTAAACACACAGTAGTTCTTCTTCCTCAAACCCTTTTTGGGTTAAGGGCATGCTGAAACCAGCAAAAGACAGGAAGTAAAACTCACTCTGAGACTTTACTCTGAGAAGACGACCTCAAGAACAGACGACAGTCACCATGCTGACATACTTTAGGATATTCTTTaacttcttttttacttttgttcttttttctgatTAACATTCGGAGTCAGTGTAAGGCCTGGCTGTACTGAGGctGCAAGAACATGAATTCTACACCTGGCAACTCCTCTGAATCGGAATGCTATCCCGAGATTCCAATGAAGTACTTCTTCTTCACTCTACATTTGGTCGTCATTGTGATTGGGATTCCTTCAAATGCGTTCTCTCTGTATGTTTCCTGTCAGCACATCAAGCAGAAAAACGAGCTGGGAATCTATCTGTTTAACCTCGCTCTGTCCGATGTCTTCTTCATCGCTGGTCTGCCTGTGTGGATGGACTTTGTCTACCATGATTTCTGGCGCCATGGCAGTACGCTGTGCACCATCTGTGTCTTCTTCCTCTACACCAACTACTACACTAGTGCTGTGCTACTGAGTTGCATTGCTGTGGACCGCTACCTTGCAGTGGTCCACCCGCTCAGCCTTCCCCACCTACGAACAATCAGCACTGCAAGTATAGTCTGTGCTGTAGTGTGGATTTTAGCTATCATCTTTAATGCCATCACCATTTCTTCAAACGACATCTATGAAGAAGAATATCAAATCTGCCTGGAGATTTTACCACTGAGCTACCATCAAAGGAGGATAAATGTAATCCGTTTCATTGTGGGTTTCCTCCTACCAGCTGTGGTGGTAGTGTTTTGTTACTGGAGGATCTGCGCGGAGGTTTATAAGAACCAGGCCATGAGGCTTCCTGATCGCATGCATGTCTTCAAGCTCCTTAGCAGCTTGCTACTGACCATCTGCATCTGCTTCGGCCCTATTCACATCACCTTGTTGCTGAGGTCCATTTATGAGGATTGTCCTCTTCTCACCTGGCTCTATGTCCTCTATAAAATAAGCGTGGCTCTCTCCACTCTGAACTGCCTGGCTGATCCCCTTTTGTACTGCTTCATCACCAGGACAGCACGCTCAAGTGTCACCAAGGCCATTCTGACCTTTCACAAATAAGAGGAGTGTAATGTTCCACACCTGACAACTCCTCTGACAAATGCTTTCCTGAGATCCCAATGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257433.3 True 1470 mRNA 0.44 2 26357779 26360746

Neighbor

gene id symbol gene type direction distance location
LOC103041211 LOC103041211,LOC108423415 coding upstream 5344 26351131 ~ 26352435 (+)
LOC103041516 NA coding upstream 21956 26331927 ~ 26335823 (+)
LOC103041814 LOC108423416 coding upstream 26823 26328801 ~ 26330956 (+)
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding upstream 440935 25835140 ~ 25916844 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding upstream 632870 25718474 ~ 25724909 (+)
ptpn21 ptpn21 coding downstream 40341 26401087 ~ 26420310 (+)
LOC103029223 akirin2,LOC100499587,LOC100379102 coding downstream 64352 26425098 ~ 26434192 (+)
LOC103026145 LOC108270054,LOC108423543 coding downstream 114029 26474775 ~ 26484622 (+)
snx14 snx14 coding downstream 127287 26488033 ~ 26506512 (+)
bmp4 bmp4 coding downstream 243972 26604718 ~ 26613764 (+)
G83663 NA non-coding upstream 17507 26339831 ~ 26340272 (+)
G83661 NA non-coding upstream 18080 26339182 ~ 26339699 (+)
G83649 NA non-coding upstream 46831 26310709 ~ 26310948 (+)
G83601 NA non-coding upstream 122604 26234916 ~ 26235175 (+)
LOC111193229 NA non-coding upstream 364767 25984681 ~ 25993012 (+)
G83672 NA non-coding downstream 61768 26422514 ~ 26423061 (+)
LOC111193231 NA non-coding downstream 146593 26507339 ~ 26565844 (+)
trnay-gua_9 NA non-coding downstream 147294 26508040 ~ 26508125 (+)
G83760 NA non-coding downstream 358232 26718978 ~ 26719365 (+)
G83759 NA non-coding downstream 358889 26719635 ~ 26723005 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 30441 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 52396 26275001 ~ 26305383 (+)
G83602 NA other upstream 104177 26235498 ~ 26253602 (+)
LOC103033015 LOC108423550,LOC108270308 other upstream 382496 25919557 ~ 25975283 (+)
supt3h supt3h other upstream 1028297 25160918 ~ 25329482 (+)
spata7 NA other downstream 32144 26392890 ~ 26399267 (+)
fermt2 fermt2 other downstream 367077 26727823 ~ 26777488 (+)
fam98b NA other downstream 1455059 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 1463510 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 2609518 28970264 ~ 28970839 (+)

Expression


Co-expression Network