trmt61b


Basic Information

Item Value
gene id trmt61b
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8623401 ~ 8634193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257562.3
TTTGTCGCTTGGCTTAGGCGTAACAGTGAAACATGGCGTTGCCCAGTCAGGGAGTCACGCTGTGTTTCTGCTCTGTACTGTAGTGTGCTCTGAACGCGCGCGGGTTTCTGTTTGAGATAGCATGAGCTCGTTTacgtttactgtgttttatttatgttggaGCTGATATGAACTGCTCGACAACACACATCTCTACCAtatagtgtgtgtctgtgagtgagTAGAGTAGAGGTGGTGTTTAGGTGTCTCTCTACCTCAGAATGACTCACAGACTGACCAGAGTGTGTGCCACCTGTTTAAGGCAGCAGAGACTGAATAACAAGTATGTTGATGCCAGAAAAACTCCCACAATTTGGACACACGTTCTGAGGAATTTCAGTATGGCTCCCAGCAGTTCAGACAGGAATAGTGATGATCCAGATGCAACGGCTCCACCTGGTCCAGCAGATTCACACTCCTCTAGAAGAGCCCTTCTGTTGGGGAGACGGAGACCCCTGTCTCCTTTAGAGCGGGTCAGTCAGCTGCTGCCCCAGGATTCGCTGAGTAAGGAGGTGTGGGAACTGAGGGAGAAAAAAGCCCTAGGTGAAGCAGAAACAGAGGAACAGGCACAGGAAGTGCCTACTGTCGGTGAATCTCAGGTTGAGGATGATGCTGTAACGCAGGGCGAGGAGACTGAAAGGATGGAGCAGATGATGCAGTTTGGGGAGACCTTGCTTGCGGAGTATCGCCGTAGTCGGAGGGTGGAGTTCCGGAAAATGTTTCTGCTGCAGGAAGGAGCCAAGCTGCAGAGTAACTGGGGCTTTCTTCCTCACCAGACCATTGCAGGGCTCCCATCTGGAAGTGTCCTGCGCACCAGCGTAGGGCTCCCTATGCTTCTCCGCCGGCCCAGTCTGGAGGAGTTTAGTCTGTTCATGAAACGAGGTCCTGCCATCTCCTATCCTAAAGACATCAGCGCtatgttgatgatgatggatgTGAGTGAAGGAGACACGGTGCTGGAGTCAGGTTCAGGATCAGGAGCGATGAGCCTCTTCCTCTCCAGAGCAGTGGGATCTCGGGGTAGAGTGTTGAGTGTTGAGGTGAGGAAGGACCACCACAGATGCTCTGTTTTAAATTACCAACGCTGGCGTTCCACATGGAAACTCCGCAGAGGGGAGGAGTGGCCTGATAATGTTCACTTCCATAACAGTGACTTGATTAACTCTGCACATTTGCTGGCTGGGCAGAGCTTCCATTCAATTGCTCTAGATATGGTCAGCCCCCATTTGGCACTGCCTACAGTGGTCCCACATCTCCACAGTGGGGCTGTGTGTGCTGTCTACCTGGCGAACATTACACAGATTATTGATTTAATGGAGGGGCTGCGATGTTCCACTCTTCCTCTGGTGTGTGAACGCATCATGGAGGTTCAGTACAGAGATTGGCTGCTGGGTCCGTCACTCAAAAAAGATGGCACCTTCAACCAGCGTAAACCTATGAGAGAAGAAACCAGTGAGGAGGATGAAAACTCAAATGACGAAGAAAATGAAGAACATACCAGTCCAAAGCAGATACCATTTGGCAGTGTCCCGTATATCGCGCGGCCTCATCCGGAGCAGTTCTCTCACACAGCGTTCCTTGTGAAATTACGCAAGATCCTGAAATAGATCATCAACTTTATCACCAATCATCGTGAAGATTCAAGCTGAGGCCAAATAAAGACcactgtgtaaaaacaaaaactgtttcAGTAAAGCAATGTTATTAAACATCTTTGTTCTTTTAAGAGCATAAAAAGGTATGCAGTGTGTAAAAAACAGTTTCCATGTGATTCAGTTTACCATACAAATTTCAGTGCAATTCCAGCCATATATAGTGTTGGGATGTGATAGACTGGTCTAAATGTTATTAGGCCTGTCaagatatttatattattgaCTGATTTTACAGTATATGGACATGATGATATTCATTAATCATTTCAGTTCAGTATAGCCCATTATGCTTTTCTTAGTAAATAAAGGCAATTAACATGA

Function

NR:

description
tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial

GO: NA

KEGG:

id description
K07442 TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257562.3 True 2015 mRNA 0.47 9 8623401 8634193

Neighbor

gene id symbol gene type direction distance location
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 56613 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 116240 8469601 ~ 8507161 (+)
erich1 NA coding upstream 180846 8415207 ~ 8442555 (+)
ppie ppie coding upstream 814451 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 824142 7766569 ~ 7799259 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1131973 9766166 ~ 9819445 (+)
LOC103026171 LOC108413038 coding downstream 1608395 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 1648472 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 1694775 10328968 ~ 10336716 (+)
LOC103027561 NA coding downstream 1718221 10352414 ~ 10362045 (+)
G78824 NA non-coding upstream 30113 8592745 ~ 8593288 (+)
LOC111193184 NA non-coding upstream 85020 8536432 ~ 8538381 (+)
G78810 NA non-coding upstream 110754 8512397 ~ 8512647 (+)
G78806 NA non-coding upstream 112577 8476510 ~ 8510824 (+)
G78797 NA non-coding upstream 138140 8463424 ~ 8485261 (+)
G78834 NA non-coding downstream 15602 8649795 ~ 8672419 (+)
G79035 NA non-coding downstream 658365 9292558 ~ 9293030 (+)
G79041 NA non-coding downstream 739463 9373656 ~ 9373883 (+)
G79042 NA non-coding downstream 739891 9374084 ~ 9375551 (+)
G79061 NA non-coding downstream 924860 9559053 ~ 9559269 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 73433 8529854 ~ 8549968 (+)
G78818 NA other upstream 85719 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 894400 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 1015737 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1750996 6857354 ~ 6872405 (+)
spata17 NA other downstream 861256 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1248813 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 1903886 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 2167164 10801357 ~ 10814914 (+)
G79654 NA other downstream 2920489 11554682 ~ 11555139 (+)

Expression


Co-expression Network