ppie (ppie)


Basic Information

Item Value
gene id ppie
gene name ppie
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7802220 ~ 7808950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257576.3
ACTGGGCAGTAAAACAGAAggatgacttttattttgaaaccgGAAGCTGAGGACTGCAGCGGGCTACAGCAAATATGGCAGCGGCCAAACGTGTTCTGTATGTCGgtggcCTGGCAGAGGAAGCGGATGAGAAAGTTCTGCATGCAGCGTTCATCCCCTTCGGTGACATAACAGACATTCAGATCCCTTTAGATTATGAAACCGAGAAACATCGTGGAtttgccttcattgagtttgaGTTGGCAGAGGATGCTGCAGCTGCCATCGATAACATGAATGAGTCTGAGCTGTTTGGCAGAACAATCAGAGTGAATATTGCCAAACCCATGAGGATTAAAGAAGGCTCCTCTCGACCGGTGTGGTCTGATGACGATTGGCTGAAGAAGTTCTCAGGGAAGACCACAGAAGAGTCGGAGGAGGCGGAGTCAGCAGCACAAGAGAGCAATACAGCCACACAGGagGGAGAGCCGCCAGCTAAGAAGGGCAGGGCGAACCCGCAGGTCTACATGGACATAAAAATTGGCAACAAACCTGCAGGCAGACTGCGCTTCCTGCTGCGAGCGGACGTGGTGCCCATGACTGCAgAGAACTTCCGGTGTCTGTGTACCCACGAGAAGGGCTTTGGGTTTAAAGGCAGCAGCTTCCACAGGGTCATCCCCCAGTTCATGTGCCAGGGAGGAGACTTCACCAACCACAACGGCACCGGCGGCAAGTCCATCTACGGACGCAAATTTGATGATGAGAATTTTGTGCTAAAACATACTGGCCCAGgTCAGCTGTCGATGGCTAACTCTGGGACGAACACTAATGGCTCACAGTTCTTCATCACCTGTGATAAAACAGACTGGCTGGATGGGAAGCATGTGGTGTTTGGAGAACTGATGGAGGGCATGGATGTAGTGCGGGCCATGGAGGCTCAGGGAACAAAAGACGGCAAACCCAAACAGAAAGTCATCATATCAGACTGCGGGGAGTATGTgtgattgttgtgtgtgtgtgtaatgtgtgtgtggctcaCCTGTTATGTAGATTAATTTCTTTTGTATGACTGTTCTGTAAATatctaataaacattttataaagaaCA

Function

symbol description
ppie Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIE (peptidylprolyl isomerase E).

NR:

description
peptidyl-prolyl cis-trans isomerase E

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09564 PPIE; peptidyl-prolyl isomerase E (cyclophilin E)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257576.3 True 1087 mRNA 0.49 10 7802220 7808950

Neighbor

gene id symbol gene type direction distance location
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 2961 7766569 ~ 7799259 (+)
LOC103024901 NA coding upstream 37543 7759849 ~ 7764677 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 57758 7682841 ~ 7744462 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding upstream 358499 7410429 ~ 7443721 (+)
rab3gap2 rab3gap2,LOC107659254 coding upstream 489928 7284848 ~ 7312292 (+)
erich1 NA coding downstream 606257 8415207 ~ 8442555 (+)
LOC103031442 LOC103359616 coding downstream 660651 8469601 ~ 8507161 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 743498 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 814451 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1957216 9766166 ~ 9819445 (+)
G78728 NA non-coding upstream 44020 7751414 ~ 7758200 (+)
G78725 NA non-coding upstream 53786 7747021 ~ 7748434 (+)
LOC103026041 NA non-coding upstream 173328 7626997 ~ 7628892 (+)
G78668 NA non-coding upstream 249852 7547456 ~ 7552368 (+)
G78646 NA non-coding upstream 412531 7389465 ~ 7389689 (+)
G78753 NA non-coding downstream 175631 7984581 ~ 7986723 (+)
G78760 NA non-coding downstream 185677 7994627 ~ 7996807 (+)
G78786 NA non-coding downstream 473990 8282940 ~ 8332434 (+)
G78792 NA non-coding downstream 547134 8356084 ~ 8356486 (+)
G78794 NA non-coding downstream 598210 8407160 ~ 8407552 (+)
fam167b LOC108433301,LOC101067225 other upstream 73219 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 194556 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 929815 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2272165 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3504036 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 720904 8529854 ~ 8549968 (+)
G78818 NA other downstream 726966 8535916 ~ 8537682 (+)
spata17 NA other downstream 1686499 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 2074056 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2729129 10538079 ~ 10556868 (+)

Expression


Co-expression Network