rtn4ip1 (rtn4ip1,LOC107659252)


Basic Information

Item Value
gene id rtn4ip1
gene name rtn4ip1,LOC107659252
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7410429 ~ 7443721 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257587.3
GACGCTGGGCGGGTCGGTCGAGTTGACTTTGGCGTGTGGGGAAAGTCGCTGccggttagcttagcttagctggcttCGTTTATTCTTCATTGTTTTagggttaaaacattaaaaacgaCAGTTTGTGTTGTTAATGTTTAGTAGTGGAATAGTTTAATAAAAGCGCGTTTAGCTGAGTGAATAAGCAGCAACAGTCAGGGTTTAGCTCAGAAGCTAACAGCTAGGTTATAGCTATAGGTAGAAcctaggttagcttagcttagttaaaGTTAGCAACTACTTAAAGTAGTGGCAGCAATAAAATGCCAGTTTCCTCCAGGTAACCTGGAATAAACGTACTAATACCActattaaaaatgcacactgCGGTAAGGAGGGTGGCGTGCAGCCGCTGGCTGAGCCTCTGTGAGCTGTCCTGGAGCGGCTGGAGGGCTGCAGACTCTGGAAGGACACTCAGCACCTCAGCCAGGAGGAGCACAGTGATGCCCGCATGGGTGATTGATAAATATGGCTCTGATAACAGCGTGTTTAGATTCACCCAAAACGCCTCATTCCCCATCATACACTATCCCAACGAGGTCATTGTCAAGGTCCATGCAGCTGGTCTCAACCCCATTGACATAAACATGAGGGGTGGCTATGGGGCTGCAACCTTGGCTATGAAGCGTGATCCTCTGAGCATCAAAAAGGCTGGCAGCGAGTTCCCCCTGATTTTGGGTCGTGACTTGTCGGGGGAGATCATGGAATGCGGGCTGGACGTGTCCTACTTCAAACCAGGAGACGAGGTGTGGGCTGCTGTTCCTCCCTGGAAGCAGGGCAGTCTGGCTGAGTTTGTGGTGGTCAGTGCTAATGAGGTGTCACACAAGCCTAAATCACTGAGTCACGTAGATGCAGCGTCCATCCCATACGTAGCGGCGACGGCCTGGTCTGCCCTCGTCAACACGGGTGGTCTCAACAAAGACAACTGTGCCAAGAAACGTATTCTCATTCTCGGGGGCTCAGGGGGAGTTGGAACCTTTGCCACACAGATGATTAAGTCATGGGGTGGCCATGTAACAGTCACGTGTTCCCAGAATGCCGAGCAGCTCGTTAGGAGTGTTGGAGCTGATGATGTTGTGGACTACACTTCAGGGCCCGTAGAGACCAAGTTACAAGCTTTGGAAAAGTTTGATTTGATTCTGGATAATATTGGTGGAGAGACTGAAAGCTGGGCCCTTGGCTTGCTCAAGCCCTGGTGTGGCGCTAAGTATGTTACCTTGGTAACCCCTTTCCTGCGTAACACCGACCAACTGGGCATCGCAGACGGGATGATGCAGACCGGagtcaccatagcaaccaaggCAATAAAGCACTTAACAAAAGGTGTCCACTATCGATGGGGATTCTTTGCTCCCAGTGGCCCCGCGCTGGACGACATCAGTGAAATGGTGGATGCAGGAAAGatcCGTGCTGTGGTGGAGGAGACGTTCTCGTTTGCTCAGGTGCCTCAAGCCTTTGAGAAACTGGAGAAGGGCCACGCCCGTGGAAAAACTGTAGTTACCGTTACCAGGGAACAGAAGGAGTGACCATGGAAACAGGAATGGGAGAAATGGGACTGGACCCGCCCATCGATCCCGGCCGACGACAGGCTGATCGCTCCATCCGTCAGAACGAACTTCCGCCCCCTGAAGCTCAGCTTACAGAAGAgcgtgatggagggaagagagaacTCCTGCTCCacagaagaagagagaagaaaagcagGAGAACAGATGCTCACGATTAGAACTGAACACCACGTGCTTCTTCTGCAGAACAATAAAACTGCCGTGCAGATGGATGACAAAAA

Function

symbol description
rtn4ip1 Predicted to enable oxidoreductase activity. Acts upstream of or within eye photoreceptor cell development and retina layer formation. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in optic atrophy 10. Orthologous to human RTN4IP1 (reticulon 4 interacting protein 1).

NR:

description
reticulon-4-interacting protein 1, mitochondrial

GO: NA

KEGG:

id description
K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257587.3 True 1828 mRNA 0.51 10 7410429 7443721

Neighbor

gene id symbol gene type direction distance location
rab3gap2 rab3gap2,LOC107659254 coding upstream 98137 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 133326 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 165677 7226490 ~ 7244752 (+)
hhat hhat coding upstream 336921 6974915 ~ 7073508 (+)
LOC103028981 NA coding upstream 515852 6886115 ~ 6894577 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding downstream 239120 7682841 ~ 7744462 (+)
LOC103024901 NA coding downstream 316128 7759849 ~ 7764677 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 322848 7766569 ~ 7799259 (+)
ppie ppie coding downstream 358499 7802220 ~ 7808950 (+)
erich1 NA coding downstream 971486 8415207 ~ 8442555 (+)
G78646 NA non-coding upstream 20740 7389465 ~ 7389689 (+)
LOC103029755 NA non-coding upstream 63979 7343193 ~ 7346450 (+)
G78603 iars2,LOC107654863,LOC107582886,LOC107715938 non-coding upstream 89179 7319609 ~ 7321250 (+)
G78602 NA non-coding upstream 126565 7282651 ~ 7283864 (+)
LOC111193179 NA non-coding upstream 155512 7252132 ~ 7254917 (+)
G78668 NA non-coding downstream 103735 7547456 ~ 7552368 (+)
LOC103026041 NA non-coding downstream 183276 7626997 ~ 7628892 (+)
G78725 NA non-coding downstream 303300 7747021 ~ 7748434 (+)
G78728 NA non-coding downstream 307693 7751414 ~ 7758200 (+)
G78753 NA non-coding downstream 540860 7984581 ~ 7986723 (+)
LOC103024862 LOC108430185 other upstream 538024 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 1880374 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3112245 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 3585557 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 4050685 3322085 ~ 3359744 (+)
G78671 LOC107659230,LOC107583602 other downstream 150986 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 212586 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 1086133 8529854 ~ 8549968 (+)
G78818 NA other downstream 1092195 8535916 ~ 8537682 (+)
spata17 NA other downstream 2051728 9495449 ~ 9554725 (+)

Expression


Co-expression Network