rab3gap2 (rab3gap2,LOC107659254)


Basic Information

Item Value
gene id rab3gap2
gene name rab3gap2,LOC107659254
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7284848 ~ 7312292 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257590.3
TAGCGGAGCCCGAGCTTCCTCCACAGCTGAGGATGTGTCACTCACTCAGCCCGAGAGCAAAACAACAGTTTGGACCGAATTTCTCTCTGATTTTAcccacatttattcatttttctaaCATTTGAAAACCGCCTGCACCTTGTAGGTAACACATAAACGGGTTTATAATTTTAGGCGAGCATTTAGAGCCGCAGAAACACTGTATTTGCTGcgtctcctgctgctgctgctccttaaTGCCCCAGCCCGGGGCAGATTAGCCACAGGCTGAGCTTTGCCTCGCCGTGTAAGGATGTCCTGCTGTCTGCAGGACTTCTGTCGGGTCCAGGAGCTCCGGCAGGTCCGGGAGTTCCTCTTCCCCAGCCAGAAGCCAGCTGCTGCGGGGCCGGCGGAGAGCAAAGACCCAGCAGaGAATGAGTTGACGTGGGATGACTCAGACTGGGGATCGTGGGAGACGTCAGCAGAGAATAAAGAAGATGGAGAGACGgctgAAGAAGAGGTACAGCATGGGCCGTGGCTGCAGGACTgtgttctctctatctctccgtGCTCAGACCTCATGGTCATCGCTCGAGAACATAAGGCTGCATTTCTCTCTGCTAAATGGCAGAATGATGACTCTGGGAGGGAGGAGATGACCCTGGCAGTGTCCTGGAGTGGTATGCTGAACGCTGAAGAGGGAGAATGTGTGAGCAGTGTCATTTGCATACCATTGGCCAGCCAGAAGAGAAGTTCCACAGGACGTCCTGACTGGACCTGTATTGTGGTTGGGTTTAGCTCTGGATACGTTCGCTTCTACACAGAGaaCGGTGTTCTGCTTTTGGCTCAGCTGCTGAATGAAGATCCTGTTCTTAGACTGAAGTGTCGGACATATGAGATCCCACGCCATCCTGGAGTTACTGAGCagCATGAGGAGCTGAGCATCCTGTACCCCACCGCTCTGGTCACTATCGATGGCTTCAGCCTCTTTCAGTCTCTACGTGCCTGCAGGAACCAGGTGGCTAGAGCTGCTGCAGCAGGAAGTGATGTCGTACAGCCTCCCCCACTTGCGTATAAGAAGTGGGGCCTGCAGGACATGGACACCATCATAGACCACAGCAGTGTGGGCATTATGACACTGAACGTGTTTGATCAGATGAAGAATGCCTCGATCCTCGGGGGATTCCACGCCTCAGTGAAAGGCAGCCCTCCTGCCATGAGTCAATATATAACTGTGGGAGGTGGACCTTTCACTGGTTTCTACTATGCTGTGGAGGGCAGTTCTCAGCCTCTTCTCTCCCATGTGGCTCTTGCCGTGGCCAGTAAACTCACATCAGCCCTGTTCAGTGCTGCCAGTGGATGGTTGGGGTGGAAGAACAAGAATGAGGAGGAGCCAGCTCAAAAACAGAAGCCTAAAGTGGAGCCCGCCACGCCCCTTCCTGTTCGatttggcTTGCCTGACTCTCGTCGCCATGGCGAGTCCATCTGCCTGTCGCCATGCAACACCATGGCAGGTGTAACGGATGACTTTGGTAGAGTGACGCTGCTGGATGTGGCACGTGGCATAGCCATCCGCATGTGGAAGGGTTACCGTGATGCCCAGCTGGGCTGGGTGCAGGTGTCTGAAGctcggggagagagagagatcgccACTTCCCCCTCCATGCCCCGCCGACACGCACAGTTCCTTGTTATTTACGCCCCCCGAAGAGGCATCCTGGAGGTGTGGGGCACACAGCACGGCCCCAGAGTCGGGGCCTTTACTGTGGGCAAACACTGCAGGTTGTTGTATTCAGGATACAGGTTAATGGGGGTGAACAGTGTGACGAGTCAGGGTTGGCATTATAACACACAGCAGGTGTGTCTGTTCGACCCTTCAACCGGAGCCCTGCGTTCTGTCACCATTCCGTTTCACTTGGCCctcagTGATAAGAAAAGTGAGCGAGCTAAAGACATGCACTTACTGAAGCGACTGACGGCTCTGCTGAAGAGCAGGGAGATCGACCCAGCTCTTTTGGAAAGTGAGGCACAGAGTATTCTGCTGGAGATCAAACACCCTGCCGTTAAGAAACAGGCACTGGAGTCTCTGCTGGCCAATAAGAACGCTCCAGTCTCATgtctgaccaacatcacacaaGCTCTGTTGGCCAGCTTAAAGGAACAAGACCCTGAGGCTGTAGATGATGCTTTGCTGCAGTTGTGTTCCTCTCAGCTCAAACTGCTGCAGCTCTACTCGGATGTTCAGCTGCTGCACTCACCTGATACCTCACCTTCTGAAACAGAACCtcTCTCATTAGCCGGTATTGAAGAGGATTTGGCTCGAATTGGACCAATCCTGCGGCGCTACACTGAGCTGAACTCCCGCCCCTGTGTCACATTTGCTCAGGACCCCGGGGGGCCGCTACCTGTCAGAGCCTTCCTGTCCCAGCTGGTGTGTGAGGGAGGAGAGCTGCGTGTGATCCGAGGCCCTGACACGGACTGGACACACCTCGgtagTTTTCTGTTCTGGGGCTGCCTTTCTGGACAGAGCCCACTGGAGAAAGTGTGTGAGACATTACAGCAGAGTGGCATCAGCCCTCAGCAGCTGCTGTCTCTGCTGTTGACTGTGTGGCTgaacagagagaaggagattTTAAAGAGAGCAGATGCCATCAGGAATTTACACACACTCCTTAACACACTCAGCTCTATGAAAGgAGCTGTGGAGGAGTCGTGGGACGTGCAGTGTATCTCCCCCTGGTGGCAGCAGGTGCGTAGTGCCTGTGTGCAGTCAGAGAGCGCTGGCGCCGCCCTGCTGGCTGCACTCGTCGCACACCGCGCTGCGAAGAGCTCCATCACCAGCCTGGCCGAGAGCAAGTTTCAGGGGGACTGGGAGTGTGTAtctctggagctggagcagtggGTGGTGTGTTTGAGGCAGCTGGAGGACGTGCTGGCACTGCAGACGCTGTTGAGCCTGCCACCCCCCCAGGGATCACCAGGAGGCGCCGTGCAGCGCTGCTCAGTCAAGTCCCTGCTGGAGAGCGGCCGAGgaGGCGTGGCAGACAGTGTAGCAAAGCTGATCTTTAGGCAGGATGTTCCTCCTGAAATGCTGAAGGACATTGTGCAGCAGAGGGAGGAGGAGCAGCACACGGAAGAGCCTGTGGAACAGCtgttacagcagcagcagcagcaggtggaggaggagaaggagatgAATGGTGTTCAGAAACTAGAGGAGCTGCTGGCGTGTGTGTGTCAGCGCTTCCCCCACTCTCTCGCCATTGATGTGTTGTGGGCTCACTGCTGCTGGGAGTATGTGGTACAGTGGAACAAAGACCCTGAGATGGGCCGGTATCTGGAGTGGTCAGTGGAGTATCTAAAGATGATCTCTAGTTCTCATATTCAGTTAGgaATCTCCAGTATGATGTGGAACACGTTTATTGTGAAACgtttctctgctgctgctttccTAATGGAAAAGGTGGGCAAGGCTCCGAAAGACCGACTGTGCAGACGGgACGTGGGGATGGGTGACGCAGCCATGACGAGTTTCCTGGGCTCGTGTGTGCAGCTGCTGCAGACTCTGATGGAggtctcctcttcttcttttcttcctccttATGCTTTTTTCTCCAAAGCGGACTCTGGGGTGGAGGAGGCTTATGtgccagagctgtgtgtggaggaggTTTGGGGGTCCGCTGAGGGTCCGGCGTCTATAGCAGAACTGGCTCTGCAGCAGAAGGCAGTTCACTACCCGCTGGTGCAGCACCACTGCCTGCTGGCGTCACTACTGCACGCAGCCATGAGCTTCTCCCTGCGCCTCAAACCCCTCAGCCTCTTCGACAGCAAGgggaaaaatgcatttttcaggGAACTGACATCAATCCAACTCCTGCCCAGTGGTGACATGGACCCTAACCTGGTTGCGATCAGACAGGAGTTTTTGATGCTTGTGTTGACTGGCTGGGTGAAGGCGGTCGGTGAAGCAGAAGACACTGGCTCTGCTAAAGTAAGCAGGGACATGGACTGGCCAGCAGTGTGTATGGAGCTGGCCTCTCTGCTGCAGGTCAATGCTGACATACTGCGCAGACATCTCGTCTGGGAGCTCTACAACCAGGGCCTGGACCTGCGCGCTGAGGAGGTGATGTTGGAGGTGGAGGATAAAGATGTGTTGGGCTCTCAGCTCCTCGTGCTTACCGGTCAGCGACTGGCCTTCTCTCTGCTGCACTCACAAACACAGACCAAAGCCACCATGGAGCTTCTCGCACGATTGCCCCCCACCCTGTGCACGTGGCTTAAAGCAATGGACCCGAGTGAGCTGCGCTGTCCCTCAGTACCACTGAAGCAGAGCAGCCGCCTGGTGAGCAAAGTCATCGAGATGCTGCCGGAAAACCACGCCCAGTACAGCCTAGCACTCCACCTGCTGGAGACTGTGGACTCGCTACAGGAAAATGAGTGAGGGAGaagcagagagagcgagagagacagagagacggtAGCAGGAGGTagggataaagagagatagagagataaatagGGATCAAAGGCAGGAGGAAGAAATGTCAGAAACGGATTTGGAGGGGAAAGAGACTTCTTAAGCACAGGTCTCTGACTGAGACTGGCTTATTTTCAGGAGTTGTTTGTCACTTTTTAAAGTCTGCTTTAATGTATCTTGAGGGCTTTCAAGGCAATCAGAGATCAtctgaatcaatcaatcagatAATTGAATAGTTGagcaaaaaaacatcaaatttgCACAATTTTCTACTTATTTcagatgtaaa
>XM_007257592.3
TAGCGGAGCCCGAGCTTCCTCCACAGCTGAGGATGTGTCACTCACTCAGCCCGAGAGCAAAACAACAGTTTGGACCGAATTTCTCTCTGATTTTAcccacatttattcatttttctaaCATTTGAAAACCGCCTGCACCTTGTAGGTAACACATAAACGGGTTTATAATTTTAGGCGAGCATTTAGAGCCGCAGAAACACTGTATTTGCTGcgtctcctgctgctgctgctccttaaTGCCCCAGCCCGGGGCAGATTAGCCACAGGCTGAGCTTTGCCTCGCCGTGTAAGGATGTCCTGCTGTCTGCAGGACTTCTGTCGGGTCCAGGAGCTCCGGCAGGTCCGGGAGTTCCTCTTCCCCAGCCAGAAGCCAGCTGCTGCGGGGCCGGCGGAGAGCAAAGACCCAGCAGaGAATGAGTTGACGTGGGATGACTCAGACTGGGGATCGTGGGAGACGTCAGCAGAGAATAAAGAAGATGGAGAGACGgctgAAGAAGAGGTACAGCATGGGCCGTGGCTGCAGGACTgtgttctctctatctctccgtGCTCAGACCTCATGGTCATCGCTCGAGAACATAAGGCTGCATTTCTCTCTGCTAAATGGCAGAATGATGACTCTGGGAGGGAGGAGATGACCCTGGCAGTGTCCTGGAGTGGTATGCTGAACGCTGAAGAGGGAGAATGTGTGAGCAGTGTCATTTGCATACCATTGGCCAGCCAGAAGAGAAGTTCCACAGGACGTCCTGACTGGACCTGTATTGTGGTTGGGTTTAGCTCTGGATACGTTCGCTTCTACACAGAGaaCGGTGTTCTGCTTTTGGCTCAGCTGCTGAATGAAGATCCTGTTCTTAGACTGAAGTGTCGGACATATGAGATCCCACGCCATCCTGGAGTTACTGAGCagCATGAGGAGCTGAGCATCCTGTACCCCACCGCTCTGGTCACTATCGATGGCTTCAGCCTCTTTCAGTCTCTACGTGCCTGCAGGAACCAGGTGGCTAGAGCTGCTGCAGCAGGAAGTGATGTCGTACAGCCTCCCCCACTTGCGTATAAGAAGTGGGGCCTGCAGGACATGGACACCATCATAGACCACAGCAGTGTGGGCATTATGACACTGAACGTGTTTGATCAGATGAAGAATGCCTCGATCCTCGGGGGATTCCACGCCTCAGTGAAAGGCAGCCCTCCTGCCATGAGTCAATATATAACTGTGGGAGGTGGACCTTTCACTGGTTTCTACTATGCTGTGGAGGGCAGTTCTCAGCCTCTTCTCTCCCATGTGGCTCTTGCCGTGGCCAGTAAACTCACATCAGCCCTGTTCAGTGCTGCCAGTGGATGGTTGGGGTGGAAGAACAAGAATGAGGAGGAGCCAGCTCAAAAACAGAAGCCTAAAGTGGAGCCCGCCACGCCCCTTCCTGTTCGatttggcTTGCCTGACTCTCGTCGCCATGGCGAGTCCATCTGCCTGTCGCCATGCAACACCATGGCAGGTGTAACGGATGACTTTGGTAGAGTGACGCTGCTGGATGTGGCACGTGGCATAGCCATCCGCATGTGGAAGGGTTACCGTGATGCCCAGCTGGGCTGGGTGCAGGTGTCTGAAGctcggggagagagagagatcgccACTTCCCCCTCCATGCCCCGCCGACACGCACAGTTCCTTGTTATTTACGCCCCCCGAAGAGGCATCCTGGAGGTGTGGGGCACACAGCACGGCCCCAGAGTCGGGGCCTTTACTGTGGGCAAACACTGCAGGTTGTTGTATTCAGGATACAGGTTAATGGGGGTGAACAGTGTGACGAGTCAGGGTTGGCATTATAACACACAGCAGGTGTGTCTGTTCGACCCTTCAACCGGAGCCCTGCGTTCTGTCACCATTCCGTTTCACTTGGCCctcagTGATAAGAAAAGTGAGCGAGCTAAAGACATGCACTTACTGAAGCGACTGACGGCTCTGCTGAAGAGCAGGGAGATCGACCCAGCTCTTTTGGAAAGTGAGGCACAGAGTATTCTGCTGGAGATCAAACACCCTGCCGTTAAGAAACAGGCACTGGAGTCTCTGCTGGCCAATAAGAACGCTCCAGTCTCATgtctgaccaacatcacacaaGCTCTGTTGGCCAGCTTAAAGGAACAAGACCCTGAGGCTGTAGATGATGCTTTGCTGCAGTTGTGTTCCTCTCAGCTCAAACTGCTGCAGCTCTACTCGGATGTTCAGCTGCTGCACTCACCTGATACCTCACCTTCTGAAACAGAACCtcTCTCATTAGCCGGTATTGAAGAGGATTTGGCTCGAATTGGACCAATCCTGCGGCGCTACACTGAGCTGAACTCCCGCCCCTGTGTCACATTTGCTCAGGACCCCGGGGGGCCGCTACCTGTCAGAGCCTTCCTGTCCCAGCTGGTGTGTGAGGGAGGAGAGCTGCGTGTGATCCGAGGCCCTGACACGGACTGGACACACCTCGgtagTTTTCTGTTCTGGGGCTGCCTTTCTGGACAGAGCCCACTGGAGAAAGTGTGTGAGACATTACAGCAGAGTGGCATCAGCCCTCAGCAGCTGCTGTCTCTGCTGTTGACTGTGTGGCTgaacagagagaaggagattTTAAAGAGAGCAGATGCCATCAGGAATTTACACACACTCCTTAACACACTCAGCTCTATGAAAGgAGCTGTGGAGGAGTCGTGGGACGTGCAGTGTATCTCCCCCTGGTGGCAGCAGGTGCGTAGTGCCTGTGTGCAGTCAGAGAGCGCTGGCGCCGCCCTGCTGGCTGCACTCGTCGCACACCGCGCTGCGAAGAGCTCCATCACCAGCCTGGCCGAGAGCAAGTTTCAGGGGGACTGGGAGTGTGTAtctctggagctggagcagtggGTGGTGTGTTTGAGGCAGCTGGAGGACGTGCTGGCACTGCAGACGCTGTTGAGCCTGCCACCCCCCCAGGGATCACCAGGAGGCGCCGTGCAGCGCTGCTCAGTCAAGTCCCTGCTGGAGAGCGGCCGAGgaGGCGTGGCAGACAGTGTAGCAAAGCTGATCTTTAGGCAGGATGTTCCTCCTGAAATGCTGAAGGACATTGTGCAGCAGAGGGAGGAGGAGCAGCACACGGAAGAGCCTGTGGAACAGCtgttacagcagcagcagcagcaggtggaggaggagaaggagatgAATGGTGTTCAGAAACTAGAGGAGCTGCTGGCGTGTGTGTGTCAGCGCTTCCCCCACTCTCTCGCCATTGATGTGTTGTGGGCTCACTGCTGCTGGGAGTATGTGGTACAGTGGAACAAAGACCCTGAGATGGGCCGGTATCTGGAGTGGTCAGTGGAGTATCTAAAGATGATCTCTAGTTCTCATATTCAGTTAGgaATCTCCAGTATGATGTGGAACACGTTTATTGTGAAACgtttctctgctgctgctttccTAATGGAAAAGGTGGGCAAGGCTCCGAAAGACCGACTGTGCAGACGGgACGTGGGGATGGGTGACGCAGCCATGACGAGTTTCCTGGGCTCGTGTGTGCAGCTGCTGCAGACTCTGATGGAgGCGGACTCTGGGGTGGAGGAGGCTTATGtgccagagctgtgtgtggaggaggTTTGGGGGTCCGCTGAGGGTCCGGCGTCTATAGCAGAACTGGCTCTGCAGCAGAAGGCAGTTCACTACCCGCTGGTGCAGCACCACTGCCTGCTGGCGTCACTACTGCACGCAGCCATGAGCTTCTCCCTGCGCCTCAAACCCCTCAGCCTCTTCGACAGCAAGgggaaaaatgcatttttcaggGAACTGACATCAATCCAACTCCTGCCCAGTGGTGACATGGACCCTAACCTGGTTGCGATCAGACAGGAGTTTTTGATGCTTGTGTTGACTGGCTGGGTGAAGGCGGTCGGTGAAGCAGAAGACACTGGCTCTGCTAAAGTAAGCAGGGACATGGACTGGCCAGCAGTGTGTATGGAGCTGGCCTCTCTGCTGCAGGTCAATGCTGACATACTGCGCAGACATCTCGTCTGGGAGCTCTACAACCAGGGCCTGGACCTGCGCGCTGAGGAGGTGATGTTGGAGGTGGAGGATAAAGATGTGTTGGGCTCTCAGCTCCTCGTGCTTACCGGTCAGCGACTGGCCTTCTCTCTGCTGCACTCACAAACACAGACCAAAGCCACCATGGAGCTTCTCGCACGATTGCCCCCCACCCTGTGCACGTGGCTTAAAGCAATGGACCCGAGTGAGCTGCGCTGTCCCTCAGTACCACTGAAGCAGAGCAGCCGCCTGGTGAGCAAAGTCATCGAGATGCTGCCGGAAAACCACGCCCAGTACAGCCTAGCACTCCACCTGCTGGAGACTGTGGACTCGCTACAGGAAAATGAGTGAGGGAGaagcagagagagcgagagagacagagagacggtAGCAGGAGGTagggataaagagagatagagagataaatagGGATCAAAGGCAGGAGGAAGAAATGTCAGAAACGGATTTGGAGGGGAAAGAGACTTCTTAAGCACAGGTCTCTGACTGAGACTGGCTTATTTTCAGGAGTTGTTTGTCACTTTTTAAAGTCTGCTTTAATGTATCTTGAGGGCTTTCAAGGCAATCAGAGATCAtctgaatcaatcaatcagatAATTGAATAGTTGagcaaaaaaacatcaaatttgCACAATTTTCTACTTATTTcagatgtaaa

Function

symbol description
rab3gap2 Predicted to enable GTPase activator activity and hormone activity. Predicted to be involved in regulation of GTPase activity. Predicted to be located in cytoplasm and extracellular region. Human ortholog(s) of this gene implicated in Martsolf syndrome and Warburg micro syndrome 2. Orthologous to human RAB3GAP2 (RAB3 GTPase activating non-catalytic protein subunit 2).

NR:

description
PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X4

GO: NA

KEGG:

id description
K19937 RAB3GAP2; Rab3 GTPase-activating protein non-catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257590.3 True 4748 mRNA 0.54 35 7284848 7312292
XM_007257592.3 False 4703 mRNA 0.54 35 7284848 7312292

Neighbor

gene id symbol gene type direction distance location
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 7745 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 40096 7226490 ~ 7244752 (+)
hhat hhat coding upstream 211340 6974915 ~ 7073508 (+)
LOC103028981 NA coding upstream 390271 6886115 ~ 6894577 (+)
LOC103025489 NA coding upstream 400752 6872563 ~ 6884096 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding downstream 98137 7410429 ~ 7443721 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding downstream 370549 7682841 ~ 7744462 (+)
LOC103024901 NA coding downstream 447557 7759849 ~ 7764677 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 454277 7766569 ~ 7799259 (+)
ppie ppie coding downstream 489928 7802220 ~ 7808950 (+)
G78602 NA non-coding upstream 984 7282651 ~ 7283864 (+)
LOC111193179 NA non-coding upstream 29931 7252132 ~ 7254917 (+)
G78542 NA non-coding upstream 315669 6968866 ~ 6969179 (+)
G78531 NA non-coding upstream 356792 6927354 ~ 6928056 (+)
G78528 NA non-coding upstream 360826 6917616 ~ 6924022 (+)
G78603 iars2,LOC107654863,LOC107582886,LOC107715938 non-coding downstream 7317 7319609 ~ 7321250 (+)
LOC103029755 NA non-coding downstream 30901 7343193 ~ 7346450 (+)
G78646 NA non-coding downstream 77173 7389465 ~ 7389689 (+)
G78668 NA non-coding downstream 235164 7547456 ~ 7552368 (+)
LOC103026041 NA non-coding downstream 314705 7626997 ~ 7628892 (+)
LOC103024862 LOC108430185 other upstream 412443 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 1754793 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 2986664 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 3459976 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 3925104 3322085 ~ 3359744 (+)
G78671 LOC107659230,LOC107583602 other downstream 282415 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 344015 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 1217562 8529854 ~ 8549968 (+)
G78818 NA other downstream 1223624 8535916 ~ 8537682 (+)
spata17 NA other downstream 2183157 9495449 ~ 9554725 (+)

Expression


Co-expression Network