LOC103031442 (LOC103359616)


Basic Information

Item Value
gene id LOC103031442
gene name LOC103359616
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8469601 ~ 8507161 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257597.3
GCGATGATTGTGGGAGTGTGAGATGCGCGCGAGGCTGGTCTGTACGGATTAATGGAGTTTTAAACGGGATGACGCTTTAAACCGAATTGTGGGAACCGATTTCCTCGATACAGGGACAGGAGCTGACGTTTTGCAGGATGGGTAATTATGCTGGCAAGGAGCGCCATGGGTCCCCAGTTTCTCCCACTGACCCATTCCAGACTCCGCCCGGCTCTCCCCTCATGCTCATTTTaccccccaaaacacaccctCTCTCCAGCACTGACCACTCTAACCCCTCCCTCACGCCTGATGGGACATTCTGCCCTGTGATTGGCCCTGGCGACTGTCCGTCATCAGAAAAAGTAACAAGTGAAAAGCTCAAGACCCCTGTGTCCCCCAACAAGACTAACAGCCCTCCCATAAGCCCATGCAGACAACTGAGTCTGCAGGACAGCAAGGAGAGTACCACTGAAACCACGCCCACATCAACATCACCCACCGCAGCCACGCCCACACCAGCCTCACCTGTGGTGTCTTCTCTCACAGTCGGCAGGGTGTGTGAAGGGGTGATAGAGCCGGAGCTTCTGCAGGAGTGTGTGCTCGCTTTGGGCGTCAACTGTACGGAGgagcattcacacacactcacagATCTGTTGAGATGTTTCCTGACAGAAAGAACACAGATGAAGAAGGAGATAAGGAGTCTGAAAGAAAAAATGGAGaCAGAGCGCAGCGAGTGGCTGCAGTTCCAGTCCGACCTGCAGGTAGCGCTGGTGGTGGCAGACAGACTGAGAGCGGAGGCGGAGGAGGAATTAAGCATGCTCAGGGAGGCGCAGCAGGACTGGGAGAGGCAGCTGGCCGACACTCAGAAGGGCCAGAAAGAGGTGGAGGTGCAGATGGAGCGGCTAAAAGCGGAGCTGGAGCAGAGTAGGCAGAAGAAGAGCCAAGGGAAGGACACTCTCGGCCAACAGGGGGCGCTGCCTCCATCCCGGGGCAGAGAAAGAGGACCGGCAGATGGGGGCGTGAGGAGCACTGGGACAGGGGGGAGAtggaaagaagagagagggagaggagagaaagaaacagatacTACAGAAAGATCACGAAGCCTGTCCCGACTTCCCTCAGACCCCCCCAGCACTGTGCTGAATGGTACATCCCAGACCTCCATAAAGTTTACTACAAAACCAGTCAGTAAGAATAACAACCCAGCCAGAGAGAGACTGATCTTAGACCAGCAGGACAACCTGATCAATTCATATAAAGatAAAAAGGATGGGAATTTATCACATTTGTCGAGTTCACCTCTTATAGATCTTCCCCTGAATAAGACCGGCAGGACGACGCCTCTAGAGGACTTCAGTAAGCTGGTGCGGCGGCATGGGGGCTCCAAGAGGAACTCACTACTGCGCTGGTGCCAGAACCGAACCATCGGATACTCGaatATTGAGATCACTAACTTCAGCAGCAGCTGGGTGGATGGTTTGGCCTTCTGTGCAGTTTACCATACCTACCTCCCTTCACATATACCATATAACACGCTCAGTCCTGAGAACAAGaaaGAAAACCTCTTACTGGCATTTCAGACGGGACAGAGTGTGGGAATCACTAACTCACTGACAGTGGAGGAGATGCTGAAAGCCGAAGGTCCCGACTGGCAGAGAGTCCTGGGGTACGTGGAGAACATATACCGGCATTTTGAGATGTGATGCCTCCTCCTGGATACCCACCATATTTGCCTTGGACCACTTTTGGACCCCTGCAGGTTTGACAGACACTCCAGCTACCATCTAAGTGGTTTCAGACTGGAGTAAAGTCtgtcaatattcaatatttttactttctttaaacTTGAACTTGAAACCAACACTCTACAGCCCAGGACTGCTCAGTTCCCAGTCAAGCTGAGGCACAGGGAACTGGTTACACACCTGCTTTCCTTTTTATACAGAACATCTACCCAGAACACTTATTAAGGGAATTTAGCACCAGTTCCTTAAGCAAACTTCAAGACCTTCAGCTTGAAAATGGACAAACATGGTCCATTACTGTGGACCACTGCAACTGCCACTGTTTCGTTGCCATATGGCGCCCTCTGCTGGTCACAGTTTGAATGTACTGAAAGACACTGAAATAATGTTGTAGTCAAAAAATATTGTTGTtactaaaatacagctctggaaaacattaagagattaaaatgatgagtttcgttgattttaccaaattgaaaatatct

Function

NR:

description
PREDICTED: cytospin-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257597.3 True 2221 mRNA 0.50 12 8469601 8507161

Neighbor

gene id symbol gene type direction distance location
erich1 NA coding upstream 27046 8415207 ~ 8442555 (+)
ppie ppie coding upstream 660651 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 670342 7766569 ~ 7799259 (+)
LOC103024901 NA coding upstream 704924 7759849 ~ 7764677 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 725139 7682841 ~ 7744462 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 45287 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 116240 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1259005 9766166 ~ 9819445 (+)
LOC103026171 LOC108413038 coding downstream 1735427 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 1775504 10282665 ~ 10292293 (+)
G78794 NA non-coding upstream 62049 8407160 ~ 8407552 (+)
G78792 NA non-coding upstream 113115 8356084 ~ 8356486 (+)
G78786 NA non-coding upstream 137167 8282940 ~ 8332434 (+)
G78760 NA non-coding upstream 472794 7994627 ~ 7996807 (+)
G78753 NA non-coding upstream 482878 7984581 ~ 7986723 (+)
G78810 NA non-coding downstream 5236 8512397 ~ 8512647 (+)
LOC111193184 NA non-coding downstream 29271 8536432 ~ 8538381 (+)
G78824 NA non-coding downstream 85584 8592745 ~ 8593288 (+)
G78834 NA non-coding downstream 142634 8649795 ~ 8672419 (+)
G79035 NA non-coding downstream 785397 9292558 ~ 9293030 (+)
fam167b LOC108433301,LOC101067225 other upstream 740600 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 861937 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1597196 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2939546 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 4171417 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 22693 8529854 ~ 8549968 (+)
G78818 NA other downstream 28755 8535916 ~ 8537682 (+)
spata17 NA other downstream 988288 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1375845 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2030918 10538079 ~ 10556868 (+)

Expression


Co-expression Network