ap4s1 (ap4s1,LOC107582370,LOC107590907,LOC107733114)


Basic Information

Item Value
gene id ap4s1
gene name ap4s1,LOC107582370,LOC107590907,LOC107733114
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3907898 ~ 3915777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257903.3
tcaATACAGACATCTTTACTAGCCAAGATAGGTTAGTAAACTGCCTTATAGCTAAGTGAAATATATTGTGGGCAGTAAGGCATCAACTGGGCAtttatttcacacttttcagacacagtgattcccacccctagtatgaAGTATGTCGGCTAGCTACGATAAATCTAAAGCTAACAAGCAAAATCACTGTAACCCAGATTACgttagttattttagctagatCAGTTAACCCCTCATCTCCACACTATCTGTCCGAGGTTTTGAAGGGGTATTTCTGTGTCAGTCCACTGCACTGCTTAACTAAAGCTCAGACTAAGctgtctgttctgttctgagCGAGTAAACGCGGAGAGAAGTCCCCGGACGGGTCGCTAACGAGCTGAAGTAGCTTCATAAAGACTGGAAGCACGCCGACGCCATGATGACCAAAACAAAATGGCTGAACGGGAGATTAGTTGACAAAGTCAGCAGGGCTGCGTGAGGAGCGGCTTCCTCCGGGTTACCACAGCTGAGGGTGAACTGTATCAGCTCAGAGGAACCGCACACAGCGAGGAGAAGATCCCACATCGTAGTGTTCTTTATAGTGTTCCCACCTTCCCAATTGACCATGATCAAGTTCCTGTTGATGGTCAATAAGCAGGGGCAGACTCGCCTGTCTAAGTACTATGAGCATGTGGACATAGGAAAGAGGGCTGCCCTGGAAGCAGATGTGGTCAAAGGTTGTTTATTTCGCAAGAAAGAGGAGTGCTCATTTGTGGAGTATAAGGACTACAAACTGGTCTATCGTCAGTATGCAGCTCTTTTTATTGTCGTCGGCATCACTGACAGTGAAAATGAACTCTCCATCTATGAGCTCGTCCACAACTTTGTTGAAGTGCTCGACAAGTATTTCAGTCGTGTGAGTGAACTGGATATCATGTTTAACTTGGATAAGGTGCACATCATTCTTGATGAGATGATCCTGAACGGACACGTTGTGGAGACGAACAAGAACCGCATTCTGGCTCCTCTACTGGCTTTAGATAAGATGGCAGAAGGATGACAGACAGCtactctttttatttaaacactgaAACTGCAGCaatatatgttatttttatttgttaggCATGATTTAAGTATTCATAAGGGAAATACTCTTGTATATACGAATAATggcctttaaaagacttttaaaagtcttttacatacctttacatatatttttcttatatatatatatatttttttttgtttttcttttttataagtTCTCAAAGTTGTTCAGCAAGAAATGGATTTTCTGCATGATTTTACCGACATGTTTGCGTTTACATTAcagaattaaatgtaataactgCTGTATATCATGTGCTGCTATATAAATGTTTACCTGCTTGGCTTTA

Function

symbol description
ap4s1 Involved in central nervous system neuron axonogenesis. Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in central nervous system. Used to study hereditary spastic paraplegia 52. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 52. Orthologous to human AP4S1 (adaptor related protein complex 4 subunit sigma 1).

NR:

description
AP-4 complex subunit sigma-1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12403 AP4S1; AP-4 complex subunit sigma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257903.3 True 1385 mRNA 0.41 6 3907898 3915777

Neighbor

gene id symbol gene type direction distance location
coch coch coding upstream 28580 3868553 ~ 3879318 (+)
LOC103022404 LOC108430680 coding upstream 49443 3853606 ~ 3858455 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding upstream 54774 3825628 ~ 3853124 (+)
foxg1 foxg1,foxg1a,LOC107590911 coding upstream 423236 3482138 ~ 3484662 (+)
trnav-cac_1 NA coding upstream 487899 3419927 ~ 3419999 (+)
LOC103044683 NA coding downstream 91738 4007515 ~ 4011258 (+)
klhdc1 klhdc1 coding downstream 383019 4298796 ~ 4308409 (+)
dnaaf2 NA coding downstream 394540 4310317 ~ 4313788 (+)
klhdc2 klhdc2 coding downstream 406777 4322554 ~ 4329505 (+)
mok mok coding downstream 438979 4354756 ~ 4364804 (+)
G77847 NA non-coding upstream 358283 3542252 ~ 3549615 (+)
G77817 NA non-coding upstream 513022 3394380 ~ 3394876 (+)
G77804 NA non-coding upstream 607227 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 610456 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 695033 3212557 ~ 3212865 (+)
G77961 hectd1,LOC107694830 non-coding downstream 1027 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 96973 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 116486 4032263 ~ 4032562 (+)
G78057 NA non-coding downstream 120537 4036314 ~ 4036575 (+)
G78059 NA non-coding downstream 129660 4045437 ~ 4104875 (+)
g2e3 g2e3 other upstream 83026 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 548154 3322085 ~ 3359744 (+)
G77722 NA other upstream 929804 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1443577 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1898480 1912532 ~ 2009418 (+)
G78111 pole2 other downstream 373730 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1536338 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2941577 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3678930 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3740530 7656307 ~ 7729001 (+)

Expression


Co-expression Network