coch (coch)


Basic Information

Item Value
gene id coch
gene name coch
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3868553 ~ 3879318 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257912.3
ACCTGCACCAGCCTCGGTTTTCAGACATCCCTGGACTATCACCCGCAAAGGATTTACTTTTTGTCCTCTGAGTAAAGCTTCTGAAGCTGGAAGCCTGAGGAAACACTGTCCGTTATCTTACCTATGTCTTCATTAACCATGTCAGTGCAGATCACGGCTCTTCACGTGTTAGGCATTCTGTATCTGACCGGCAGCAGTTATGGATCTGAATTAAGTGTCCCAGTGCCGATCTCATGCGGGATCCGTGCGGCGGACCTGCCCGACTCCACCCAGGTGGTGCTGTGTCCGGCGAACTGCACCCTGTGGAAGCTCTCTGTGTTCGGCTCAGGGGTCTACGCCTCTGTTTCTAGCGTGTGCGGTGCAGGAGTGCACAGAGGGATCATCGACGTGTCTGGAGGTCCGCTGGAGATCCAGAGAGTCGCGGGCAGGTCCAACTACCTCAGCTCTTACGCACATGGCATCCAGTCCCAAGCTCTGTCTCGGTGGAGTGCATCTTTCACAGTGGCCAGATCTATCAGCTCCCCTATGGAAGTATCTGGCCAAACCACCTCTACACTCCCAGCACCTGGAACAGTGAAGAAAACTGTCAAAAAGGCCCCAAagaaacctccagcagcagagAATCgaaGCTGCCAGGTGGACGTTGCGCTGCTGCTGGACAGCAGTTACAACATCGGGCAGCGACGCTTTAACCTGCAGAAGAACTTCATTGGCCGACTAGCAGCAATGCTAAAAGTGGGACCAGATGGACCACGAGTGGGGGTGGTGCAAGCtagtGAGACGCCACGGATTGAATTCTACCTAGGCAACTACAGCATGCCTAAAGATGTGATTTTTGGCCTGAAAGATACATCTTACATAGGGGGCAACACCAATACAGGCAAAGccatattacacacagtgagGAACTTTTTCAACCCTGAGTATGGCGTGCGGAGAGGACACCCGCGGGTAATTGTGGCCTTTGTAGATGGATGGCCATCTGATAACCTGGAGGATGCAGCAGTAATGGCGAGAGAGTCTGGTATCAATGTGTTTGTGGTGTCCGTGGCCAAACCTATCCCTGAGGAGATGGGCTTGGTGAGGGATCAGGACTACACAAAGAAAGCTGTCTGCAAAGACAATGGTTTCTTCACCATGACCATGCCCAGCTGGTTCAGCACCAACAAGTTTGTAAAGCCGCTGGCTCAGAAGCTGTGCTCCATCGATCAGCTGCTCTGCAGCAAAACGTGCTATAACTCCGTCAACCTGGGCTTCCTGATCGATGGTTCCAGCAGCGTTGGTGACACAAACTTCCGACTGGTGCTCAGCCTCATTAGCTCCATTGCCCGCAACTTTGACATCTCCGATATTGGGTCACGAGTCGGAGCCATCCAGTTCACTTATGACCAGAGGCTGGAGTTCGGCTTCAACGAGCACACCACAAAAGACGACGCCTTGAGGGCCATCCAGAACATCCCGTACATGAGCGGAGGCACGGCCACTGGCGATGCCATCACCTACGCTGTGGAGAATCTCTACGTGCCTCGCTCCATGGGCATGGGCAAGAAGTACCTCATTATTGTGACGGATGGCCAGTCTTATGATGATGTCAGAGGACCTGCTATAGCTGCTCAAAGGGCGGGCATTACAGTGTTcactgtgggcgtggcctggGCACCGATGGAGGACTTGAGGGCCATGGCATCCGAACCCAAAGACACTCACACCTTCTTCACCCGGGAGTTCACCGGCCTCGAGCAGTTCGAGCAGCCGATTGTACGGGGGATCTGCAGGGACTTCACCGAgttcaattaaaaacaaaaaaaatgtgtttgcttAGGGAGGGAGAAGAAGTCAGAAAGGTTTAAGGCAGgtgggagaaagaaaaagaagcaagtaagcaagtaaacaagaaagaaagaaagaaatctgaCTATTTCTACACATACTAGAGTAAAATtgtagtgtttttcttttaaatttagaAGTATTCTCTATGCAGGGAACAGCCCTTTCGTCATATTGTTCGttgtctgagaaaaaaaaacacaaaaaagtctGCATGATTATGTGTGCTTTAGAGATGTGCTCAATCCAAAGGGTGTTACAGCTTAATCTAAGAATGTATAACGCTATATCAAACTCGACCCTCCTTCGCGGTGGAAAATGTCATTACTTGAGAGATACAGCCTTGTCCTTGTATTCTAGGAAATATAAATCTTACTGTATTCGTTTGTTTCTTTTCCGAGGTTGAGGTCCAGAATGAATACGATCCGTATCATTTCACTGTAAGCGCTGATAGATCTGAATGGTGAGAATTAACAGTTAATAAAGATTTCATTTTGATTTCGTAGTGATCAATGGGGGTGCACAAGAGATGTTTGCAAAGGACTAAAaccaaaacagagagagagaagctgagaAAGCTGAGTAACTTCTTGTGCGCACCAAATGTATGTAGAGCAGAGACCCAGAAAGAACACTTTTAACCAAAGCTTCACCAAAACCACGTTTTAACATCTGTATTACATCTGTATTACATCTTTATTACATCTGTATTAAGTTAGATCACATGCTCTGTACTTGGGGACCAAAACTATGCAAAAACACTGTAGTACATGCACACAGCCTCTTCTATAATTACATCACTTCACTCTATGTTAATGTTAACGTCACATATTGTATGTTTGGGAATGTTTCAGTCACAgtacatgtttgtgtgtgtgttgatttaaGGTTTTTGAGGATCACATCTGAAACTATTAGCACTAAAACTGCTTTCATCACACACGTATACAtcatttttctttgtcttttttttttgcataaattgtACTTCATTGTACTTATCAAGTGTTTCCTGTATACTCATCTATATGCATGCTTCACGGCCTTGCAAACTGAAGGGGGGGCTATAGAGTGATTGTACatttctgtttaatttattacttTCTTCTAAATAAAGGACAAGGTATTTTTA

Function

symbol description
coch Predicted to act upstream of or within defense response to bacterium and positive regulation of innate immune response. Predicted to be active in collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).

NR:

description
cochlin

GO: NA

KEGG:

id description
K23574 COCH; cochlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257912.3 True 2962 mRNA 0.46 12 3868553 3879318

Neighbor

gene id symbol gene type direction distance location
LOC103022404 LOC108430680 coding upstream 10098 3853606 ~ 3858455 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding upstream 15429 3825628 ~ 3853124 (+)
foxg1 foxg1,foxg1a,LOC107590911 coding upstream 383891 3482138 ~ 3484662 (+)
trnav-cac_1 NA coding upstream 448554 3419927 ~ 3419999 (+)
trnav-aac_3 NA coding upstream 451642 3416839 ~ 3416911 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding downstream 28580 3907898 ~ 3915777 (+)
LOC103044683 NA coding downstream 128197 4007515 ~ 4011258 (+)
klhdc1 klhdc1 coding downstream 419478 4298796 ~ 4308409 (+)
dnaaf2 NA coding downstream 430999 4310317 ~ 4313788 (+)
klhdc2 klhdc2 coding downstream 443236 4322554 ~ 4329505 (+)
G77847 NA non-coding upstream 318938 3542252 ~ 3549615 (+)
G77817 NA non-coding upstream 473677 3394380 ~ 3394876 (+)
G77804 NA non-coding upstream 567882 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 571111 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 655688 3212557 ~ 3212865 (+)
G77961 hectd1,LOC107694830 non-coding downstream 37486 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 133432 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 152945 4032263 ~ 4032562 (+)
G78057 NA non-coding downstream 156996 4036314 ~ 4036575 (+)
G78059 NA non-coding downstream 166119 4045437 ~ 4104875 (+)
g2e3 g2e3 other upstream 43681 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 508809 3322085 ~ 3359744 (+)
G77722 NA other upstream 890459 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1404232 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1859135 1912532 ~ 2009418 (+)
G78111 pole2 other downstream 410189 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1572797 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2978036 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3715389 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3776989 7656307 ~ 7729001 (+)

Expression


Co-expression Network