LOC103026471 (LOC100304858)


Basic Information

Item Value
gene id LOC103026471
gene name LOC100304858
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2465310 ~ 2468562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257927.3
CTGCGTCATTCCCCGCAATCCGAGGCGAGCTGTCCACACACAGAGCACACAGTTTAGAAACCGGATTATAAATTAAACAGAGCGGATTTTAACTGCTGCTAAAGTTTAGAGAAGATGGTGTTTAAGTGCCCTGGCGGGGCTGCGGTTCTGATAAGTGCAGTTCTGTGTGTTTTCGGGCCGTGTTTGTGCGGCGGGCAGCAGCCCGTCCTCAGCCCGGAGCTCCCGGAGCCGCTGGCGGGGGGAGAGGGCGGGGAGGCGGCGCTTCTGACCGCGGACAGGTTTCAAATCGAGGGCCGAGCGGCTGTTTATGGAGTCCGGCCTGAGATCTGGGCTCCGTCCGCTGTAGTgctggtggatggagaagagcacGTTGGTTTTATCAGACTCGATggaagcttcacagtaaatgaTGTCCCTTCTGGATCATATGTGGTCCAGATTGCTTCCCCTGTGTATAAATTTGAGCCTGTCAGAGTGGATATCACCAGCAAGGGGAAGATGAGagctCGAAGAGTTAATTACATCAGGACATCTGAGGTCCTTCAGTTGCCTTACCCGCTTCAGATAAGATGCACTGGACTTCACTCCTACTTTATAGAAAGAGAAACCTGGGGGTGGTCTGATTTCTTGATGAATCCCATGGTCCTCATGATGGTGCTTCCTCTCGTGATCATCCTTCTTCTTCCAAAGGTTATCAACACAAATGACCCAGCAATGAGACAGgaaATGGAACAATCTATGAATATGCTCAACCCAAACCCCGACCTTCCAGATGTGTCTGAGCTAATGACCAAGTTCTTTGCTCCGCCCAAAAGCcacagtagcagtagtagtagtggtagtggtagtagtaagtCAGGAGGTGGCAGTCAGCGGGGTCACCGGGGAGGCCCGAGGAGAAGGTAGCGCTGATCTGAGCAGGGACATGTGTTACTTGTGCCAATTATTCACCATCATCTAAATGAGCGCCATTAGtcattttactaaaaatgattgaaaaaaaaaaaaacaaatgatgcGATTGTTGCTACTAATgccttatacagctctggaaaaaatgaagagagaacttcagtttctgaatcagtttctctgattttgttatttataggtttatgtttgagtaaaatgatca

Function

NR:

description
hypothetical protein, partial

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257927.3 True 1135 mRNA 0.48 5 2465310 2468562

Neighbor

gene id symbol gene type direction distance location
fsip1 NA coding upstream 152648 2247051 ~ 2312662 (+)
dnajc17 dnajc17 coding upstream 319034 2087613 ~ 2146276 (+)
LOC107197725 LOC108430641,LOC108269631 coding upstream 610432 1836789 ~ 1854878 (+)
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding upstream 634215 1805947 ~ 1831095 (+)
spint1 NA coding upstream 713202 1734621 ~ 1752108 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding downstream 2836 2471398 ~ 2474791 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding downstream 292108 2760670 ~ 2864439 (+)
eif2ak4 eif2ak4,LOC107673787 coding downstream 440047 2908609 ~ 2957430 (+)
tecpr2 tecpr2,LOC107758275 coding downstream 793229 3261791 ~ 3296653 (+)
rcor1 rcor1,LOC107719500,LOC107590914,LOC107733187 coding downstream 841256 3309818 ~ 3324750 (+)
G77566 acp7 non-coding upstream 12865 2399999 ~ 2452445 (+)
G77569 NA non-coding upstream 42364 2411527 ~ 2422946 (+)
G77559 thbs1,LOC107668245,LOC107756566,LOC102310807,LOC101487021,LOC102776654 non-coding upstream 144305 2320215 ~ 2321005 (+)
G77533 NA non-coding upstream 147830 2293289 ~ 2317480 (+)
G77544 NA non-coding upstream 161480 2261986 ~ 2303830 (+)
G77711 NA non-coding downstream 233637 2702199 ~ 2713270 (+)
G77712 NA non-coding downstream 250561 2719123 ~ 2743611 (+)
G77715 NA non-coding downstream 340997 2809559 ~ 2828232 (+)
G77716 NA non-coding downstream 364006 2832568 ~ 2869809 (+)
G77717 LOC108430628,LOC108269477,LOC107745352,LOC107711907 non-coding downstream 401295 2869857 ~ 2870831 (+)
LOC103031026 NA other upstream 989 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 455892 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 757013 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 768329 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 902130 1528970 ~ 1563180 (+)
G77722 NA other downstream 431572 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 853523 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 1297218 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 1820945 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2983553 5452115 ~ 5530055 (+)

Expression


Co-expression Network