klhdc2 (klhdc2)


Basic Information

Item Value
gene id klhdc2
gene name klhdc2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4322554 ~ 4329505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258893.3
ATAAGAAGAACGATTCATTCGCGAGTCGGAGCTCATGGCTAGCTAGTCTGTGTTGTGCGTAAACAGTGCGGTTTTTAGTGAAATACGGCAGCTGTTCGCGTGAGTTTACCTGCAGGTCTCGTGCTGTTTGGGTGCTGTTAGACGGGGAGGACGCTGGTAATATCGGTTTTACTGTTTCAGTGTGTAAAAGTGCAGAAAATTCACTGCAGGAAGCTGATTTTAGCTGCAGCCTGAGTGTGAGAGGGGCTTCGGGAAGGTAAACAAGACGCGGCGTTTAGCTGTAATTCTGCCTTTGTGACTCATTTCACCTGAGGAACCTGATTAACCTGCTTAGTTTGAgaagttttgttttaaacagaTGTTACTGTATAACTAAAGCCAGCAGCAGTACTGAGCGGAGCCTCATTTCAGCATTTCGTTAACTAAAGATCCCAAACCGACTCTTTCGCTCTCCGCTTCCTTGTATGTagttagttaacgttagctagttaaaaATGGCAGAAATGGAGAACGACGGTGATCTAGAGGATATTCCACAAGAAAACGACGAAGAAGAAGACTCTGAtttggaggaggaagaggaggatttCGAGTGGGATGCGCAGGAAGATGCAGGAGACTTGGACTGGGTGGAGGAGGCACATGTCCTCCTGGACGCTGACACTTCCAAGTCCTGTCCAGGAGACACCCCGGCAGAGAGGAGTGGGCACGTGGCTGTGGTGGATAGGAACTGCATGTATGTGTGGGGAGGATACAAGaACGCTGAAGCAACAGCTACAGCCTTTGTTGACTTGTATTTGCCAAAGAAGGAAGTCTGGATATACAACATGGAAACTGGCAGATGgAGAATGCAGCTTTCAAAAGGAGAGCTTCCTGCAGCTATGTCAGGAAGCTGTGGAGTATGCATAGATGGTATTTTGTATGTCTTTGGAGGCCATTATGCAAGAGGAAATACTAACTTGGTTTATCGTCTGCCTTTGAGATCCTCTTCATTGGTCTGGGAGAGGATGAAGGACCTGAAGGGCTTAGCTCCCACATGTAAAGATAAACTGGGCTGTTGGGTTTACAAAAACagATTGGTGTATTTTGGGGGCTACGGCCATGTGGCACAAGCAGGTCATCTAGGAGCATTCGAGTTAGATGAGAACTCACTCATGggtAACCATGCAGCTCGAGGCTGGaacaatcacattcacattctcAATCTCGAAACATCAACCTGGAGTCAACCCGCCACAAAGGGAAATGCTCCAACACCGCGAGCAGCCCATGCTTGTGCCACTATTGGAAACCGTGGTTTTGTCTTTGGAGGACGTTACATGGATCATCGCCTAAATGACCTGTACTGTATCAACATGGACTCCTGGGAATGGAGTGAAATGTCCGTGCCGCAGCAGGGTCCAGTTGGCCGCTCCTGGCATTCTTTTATACCTGTGTCAAATGACCATATCTTCTTGTTCGGGGGATTTACTACCAACAGAGAAACACTTAGCGACGCGTGGCTGTACTGTGTGAGTACGAATGAGTGGAGACCTTTTAAACACAACCACGAAGAAAGTCCCAGactCTGGCACACAGCATGTTCAAATCCAGATGGGGAAATATTTGTGTTTGGAGGCTGTGCCAATAACCTACTTTCACAGCAGAGAGCGGCCCACAGcaatgaattattaatttttatggtTCAGCCCAAGACATTGCTTAGGACTTGTACAGAGGTTATTGTGCAGCACAGACAGCAGCTGGAGAGCATGTGGGAATGCCTGCCCAAACATCTCCTCCATCACATCAAACAGAGAATCGGTACCACCAACACCGGAGGATCCTAGTGCTCACtgcacacgtgcacacacactttaatGAGCAATAGTCTGCCTCCGCTTCTGAAGCAGGTGTAGGAGCTTTGCGTAACTGCCaggcctttttttcttttttaggtcTAAGAACTCTTctgtattataaaaatgtatatttagctTTTCTTTTGTTGCTCCTGCGCTGATGCCATTTTTAGACTTTTTCAAATAACATGGAAAACAACATTAAACCTAGTTTTTTTCATTTCCTTAAATAACTAATCTAGTAAATATTCAGCTCTTCTCCCTCTACTAGAGCACAAAACCAA

Function

symbol description
klhdc2 Orthologous to human KLHDC2 (kelch domain containing 2).

NR:

description
kelch domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258893.3 True 2125 mRNA 0.46 13 4322554 4329505

Neighbor

gene id symbol gene type direction distance location
dnaaf2 NA coding upstream 8766 4310317 ~ 4313788 (+)
klhdc1 klhdc1 coding upstream 14145 4298796 ~ 4308409 (+)
LOC103044683 NA coding upstream 311296 4007515 ~ 4011258 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding upstream 406777 3907898 ~ 3915777 (+)
coch coch coding upstream 443236 3868553 ~ 3879318 (+)
mok mok coding downstream 25251 4354756 ~ 4364804 (+)
LOC103042329 NA coding downstream 50802 4380307 ~ 4387505 (+)
LOC103040906 ppp2r5c,LOC106937856 coding downstream 136859 4466364 ~ 4486907 (+)
begain NA coding downstream 244771 4574276 ~ 4590198 (+)
wars wars,LOC107088074 coding downstream 272436 4601941 ~ 4609185 (+)
G78117 NA non-coding upstream 2227 4318054 ~ 4320327 (+)
LOC111193172 NA non-coding upstream 36323 4278111 ~ 4286231 (+)
G78066 NA non-coding upstream 163237 4158517 ~ 4159317 (+)
G78068 NA non-coding upstream 164689 4154743 ~ 4157865 (+)
G78060 NA non-coding upstream 208178 4081395 ~ 4114376 (+)
G78122 nemf,LOC102775640 non-coding downstream 21948 4351453 ~ 4353277 (+)
G78172 NA non-coding downstream 148361 4477866 ~ 4490654 (+)
G78283 NA non-coding downstream 875577 5205082 ~ 5207413 (+)
G78282 NA non-coding downstream 963250 5292755 ~ 5294206 (+)
G78397 NA non-coding downstream 2227728 6557233 ~ 6563936 (+)
G78111 pole2 other upstream 24370 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 497682 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 962810 3322085 ~ 3359744 (+)
G77722 NA other upstream 1344460 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1858233 2458445 ~ 2464321 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1122610 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2527849 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3265202 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3326802 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 4200349 8529854 ~ 8549968 (+)

Expression


Co-expression Network