LOC103040906 (ppp2r5c,LOC106937856)


Basic Information

Item Value
gene id LOC103040906
gene name ppp2r5c,LOC106937856
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4466364 ~ 4486907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258897.3
tacAATGTAATTACAGTGAACTGCAGTAGTTAATATTGTAGAGAAtaacagagaataaaaaaaagtaatattaatatcctCTATGATCTTTTGTGTGGCTTTGATGAAGTTGAGGTTCACCACAGTTTAGCACAATCTTGTTACAATAGTCCTGAAATTCTCAGAAGGCTTCTTCTGCCTTCTGCTGGATCCTGACAACTGTGAATGAGGAGGAGCTGCTGAGTCTGTAAACCCTCCTCTATTTATTCCAGCCAATGCTGCTGTAGTTCACCATGCATCCTGGTGACACCATTCTTCCTAGCAGCAGTGAACCAATAGGTTCCGCATTTCCTGCTGACATCACAGGCTAGCCAGTTCCCTCCAGCAGCAGGGAGCTTCATTTTCTGCTTGGCTTTTGTGCTAAAATGGAGGCTGATTCCCTGCCCTAAGTGGACTTCCCTCAGCCGAGTATACATGCTGACATGCAATAAAGCAGGAAACAGGATGGTGGTGGACGCGCCTAATTCCAACGGGCCTTTTCAGCCGGTGGCCCTGATGCACTTCAGAGATGTATCTCCAGCCGAGCAGGAGAAGCTGTTCATCCAGAAGTTGCGGCAGTGCTGCGTGCTTTTCGACTTCGTCTCCGACCCCCTAAGTGACCTAAAATGGAAGGAGGTGAAGCGGGCGGCTCTGAGCGAGATGGTGGAGTATATCACCCACAACCGCAATGTCATCACTGAGCCCATCTACCCAGAGGTGGTTCACATGTTTGCTGTGAATATGTTCAGGACCTTGCCTCCCTCGTCCAACCCCACCGGAGCAGAGTTTGACCCCGAGGAGGACGAGCCCACGCTAGAAGCAGCATGGCCACATCTACAGcttgtctACGAGTTCTTCCTCAGATTTTTAGAATCTCCAGACTTTCAGCCAAATGTTGCGAAGAAATACATCGACCAGAAATTTGTGATGCAGCTTCTGGAGCTGTTTGATAGTGAAGACCCTCGAGAGAGAGACTTCCTGAAAACAACTCTGCATCGCATATATGGAAAGTTTCTGGGACTGAGGGCGTATATTAGGAAGCAAATCAACAACATATTTTACAGgTTCATATATGAAACAGAGCACCACAATGGAATAGCTGAACTACTGGAAATTCTTGGAAGTATAATCAATGGCTTTGCCTTACCGTTAAAAGAAGAGCACAAGATTTTTCTGCTGAAGGTTTTATTGCCTTTACACAAGGTCAAGTCACTTAGCGTTTACCACCCACAGTTGGCGTACTGCGTGGTGCAATTCCTGGAGAAGGACAGCACGCTCACTGAGCCAGTAGTGATGGCCCTTCTGAAGTACTGGCCAAAGACTCACAGCCCAAAGGAGGTGATGTTCCTCAACGAGCTTGAGGAGATTCTGGACGTTATAGAACCATCTGAGTTTGTAAAAGTGATGGAACCTCTGTTCCGACAGCTGGCCAAGTGTGTCTCCAGCCCACACTTTCAGGTGGCAGAAAGAGCTCTGTACTACTGGAACAATGAGTACATAATGAGCCTCATCAGTGACAACGCTGCCAAAATCTTACCCATCATGTTCCCAGCACTGTACCGCAACTCAAAGACACACTGGAACAAGACCATCCACGGCTTGATCTACAATGCATTAAaactttttatggagatgaaccAGAAGCTCTTTGATGACTGCACACAGCAATTCAGAGCTGAGAAAAATAAagaaAGAGCGAAGTTAAAAGAGCGGGAAGAGGCCTGGATAAAGATCGAGAATCTTGCCAAATCAAACCCACAGTTCCTTATGTATGTTGATTCGTCTGGCCTAAATAGCCCTGTAGAAATGGAGACTGATGGGCTATTGATAGAAGATATTCAGAGGTTAAAAAAGACTGTAGAGGAGGGAGCCATTCAGatgcaGAGGGAACCGCGTAAGGACCGGCCGCTGGTAAGGCGCAAGTCGGACTTGCCTCAGGACATGTACACCACGAAAGCCTTGGAGTCGCACCGTCGGGCTGAAGACATGATCAACCATGACGGCCACTAGCTTCATCTTTCCTCTTCTACATCCTCTTAGTTCATTTCTAAACTGAGTTCATCTGACAAACACAGAGCATAAAGCCTTACTGACAGCGTGTTCTCTCCGCCCCTCGACCCTCCACTGAAAGCGTGAATTGCTCAGGTTTTGATCTGAGAGGTATGGGTCCGTCACAGATGTTTCCTGCCTGTCCCtctccatgatttttttttttttctttttattttttttttcttgctgtacTTTGGTGTTCAAGCCTGTGTGTTGGTCGGTCCATTCCATCCTGTCTGTGCCACTTCTGTCTGCAGCTCATGGCagaattagatttttattttaattttatttttggtcaACTGGTACGCCCAGGGGTGAGGAGGGATGTGTGGAGGGTAGTTTGACACTACCTACCTAAGGGTTTTCCATTCTATTGACCATTGCCAGTGCCAAGATGATCATATAGGAGAGCTTCTTCATTTACCTTCATTTATCTCTGCTGTCTTGAGTGCATTTTCGTGCCATAAGAAACTCTTTATCATTTAATTAACCAcaggtgtctttttttttttttttttttttaataacagactTCTTATTGCAATTTTAACCACACTGAGTGGTATATTAATGGTTTAAACAATGGTACCATTTTAAACAGATCATTCTTCTAGATCAAGATTCTAGAAACAAATACAACCCCATTTCTAATTTGTTTGGGACATTGtgtaaaacttaaattaaaacagattaCGATGA
>XM_007258899.3
ATTACAGTGAACTGCAGTAGTTAATATTGTAGAGAAtaacagagaataaaaaaaagtaatattaatatcctCTATGATCTTTTGTGTGGCTTTGATGAAGTTGAGGTTCACCACAGTTTAGCACAATCTTGTTACAATAGTCCTGAAATTCTCAGAAGGCTTCTTCTGCCTTCTGCTGGATCCTGACAACTGTGAATGAGGAGGAGCTGCTGAGTCTGTAAACCCTCCTCTATTTATTCCAGCCAATGCTGCTGTAGTTCACCATGCATCCTGGTGACACCATTCTTCCTAGCAGCAGTGAACCAATAGGTTCCGCATTTCCTGCTGACATCACAGGCTAGCCAGTTCCCTCCAGCAGCAGGGAGCTTCATTTTCTGCTTGGCTTTTGTGCTAAAATGGAGGCTGATTCCCTGCCCTAAGTGGACTTCCCTCAGCCGAGTATACATGCTGACATGCAATAAAGCAGGAAACAGGATGGTGGTGGACGCGCCTAATTCCAACGGGCCTTTTCAGCCGGTGGCCCTGATGCACTTCAGAGATGTATCTCCAGCCGAGCAGGAGAAGCTGTTCATCCAGAAGTTGCGGCAGTGCTGCGTGCTTTTCGACTTCGTCTCCGACCCCCTAAGTGACCTAAAATGGAAGGAGGTGAAGCGGGCGGCTCTGAGCGAGATGGTGGAGTATATCACCCACAACCGCAATGTCATCACTGAGCCCATCTACCCAGAGGTGGTTCACATGTTTGCTGTGAATATGTTCAGGACCTTGCCTCCCTCGTCCAACCCCACCGGAGCAGAGTTTGACCCCGAGGAGGACGAGCCCACGCTAGAAGCAGCATGGCCACATCTACAGcttgtctACGAGTTCTTCCTCAGATTTTTAGAATCTCCAGACTTTCAGCCAAATGTTGCGAAGAAATACATCGACCAGAAATTTGTGATGCAGCTTCTGGAGCTGTTTGATAGTGAAGACCCTCGAGAGAGAGACTTCCTGAAAACAACTCTGCATCGCATATATGGAAAGTTTCTGGGACTGAGGGCGTATATTAGGAAGCAAATCAACAACATATTTTACAGgTTCATATATGAAACAGAGCACCACAATGGAATAGCTGAACTACTGGAAATTCTTGGAAGTATAATCAATGGCTTTGCCTTACCGTTAAAAGAAGAGCACAAGATTTTTCTGCTGAAGGTTTTATTGCCTTTACACAAGGTCAAGTCACTTAGCGTTTACCACCCACAGTTGGCGTACTGCGTGGTGCAATTCCTGGAGAAGGACAGCACGCTCACTGAGCCAGTAGTGATGGCCCTTCTGAAGTACTGGCCAAAGACTCACAGCCCAAAGGAGGTGATGTTCCTCAACGAGCTTGAGGAGATTCTGGACGTTATAGAACCATCTGAGTTTGTAAAAGTGATGGAACCTCTGTTCCGACAGCTGGCCAAGTGTGTCTCCAGCCCACACTTTCAGGTGGCAGAAAGAGCTCTGTACTACTGGAACAATGAGTACATAATGAGCCTCATCAGTGACAACGCTGCCAAAATCTTACCCATCATGTTCCCAGCACTGTACCGCAACTCAAAGACACACTGGAACAAGACCATCCACGGCTTGATCTACAATGCATTAAaactttttatggagatgaaccAGAAGCTCTTTGATGACTGCACACAGCAATTCAGAGCTGAGAAAAATAAagaaAGAGCGAAGTTAAAAGAGCGGGAAGAGGCCTGGATAAAGATCGAGAATCTTGCCAAATCAAACCCACAGatgcaGAGGGAACCGCGTAAGGACCGGCCGCTGGTAAGGCGCAAGTCGGACTTGCCTCAGGACATGTACACCACGAAAGCCTTGGAGTCGCACCGTCGGGCTGAAGACATGATCAACCATGACGGCCACTAGCTTCATCTTTCCTCTTCTACATCCTCTTAGTTCATTTCTAAACTGAGTTCATCTGACAAACACAGAGCATAAAGCCTTACTGACAGCGTGTTCTCTCCGCCCCTCGACCCTCCACTGAAAGCGTGAATTGCTCAGGTTTTGATCTGAGAGGTATGGGTCCGTCACAGATGTTTCCTGCCTGTCCCtctccatgatttttttttttttctttttattttttttttcttgctgtacTTTGGTGTTCAAGCCTGTGTGTTGGTCGGTCCATTCCATCCTGTCTGTGCCACTTCTGTCTGCAGCTCATGGCagaattagatttttattttaattttatttttggtcaACTGGTACGCCCAGGGGTGAGGAGGGATGTGTGGAGGGTAGTTTGACACTACCTACCTAAGGGTTTTCCATTCTATTGACCATTGCCAGTGCCAAGATGATCATATAGGAGAGCTTCTTCATTTACCTTCATTTATCTCTGCTGTCTTGAGTGCATTTTCGTGCCATAAGAAACTCTTTATCATTTAATTAACCAcaggtgtctttttttttttttttttttttaataacagactTCTTATTGCAATTTTAACCACACTGAGTGGTATATTAATGGTTTAAACAATGGTACCATTTTAAACAGATCATTCTTCTAGATCAAGATTCTAGAAACAAATACAACCCCATTTCTAATTTGTTTGGGACATTGtgtaaaacttaaattaaaacagattaCGATGA

Function

symbol description
ppp2r5c Enables peptidase activity and protein phosphatase regulator activity. Involved in DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; and negative regulation of cell population proliferation. Acts upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process and protein processing. Located in several cellular components, including Golgi apparatus; chromosome, centromeric region; and nucleoplasm. Is integral component of membrane. Part of protein phosphatase type 2A complex.

NR:

description
serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258897.3 True 2772 mRNA 0.45 14 4466364 4486907
XM_007258899.3 False 2646 mRNA 0.45 13 4466373 4486907

Neighbor

gene id symbol gene type direction distance location
LOC103042329 NA coding upstream 78859 4380307 ~ 4387505 (+)
mok mok coding upstream 101560 4354756 ~ 4364804 (+)
klhdc2 klhdc2 coding upstream 136859 4322554 ~ 4329505 (+)
dnaaf2 NA coding upstream 152576 4310317 ~ 4313788 (+)
klhdc1 klhdc1 coding upstream 157955 4298796 ~ 4308409 (+)
begain NA coding downstream 87369 4574276 ~ 4590198 (+)
wars wars,LOC107088074 coding downstream 115034 4601941 ~ 4609185 (+)
LOC103044998 LOC103044998 coding downstream 163247 4650154 ~ 4659702 (+)
kdm1a kdm1a coding downstream 692730 5179637 ~ 5202441 (+)
ptafr NA coding downstream 795107 5282014 ~ 5289766 (+)
G78122 nemf,LOC102775640 non-coding upstream 113087 4351453 ~ 4353277 (+)
G78117 NA non-coding upstream 146037 4318054 ~ 4320327 (+)
LOC111193172 NA non-coding upstream 180133 4278111 ~ 4286231 (+)
G78066 NA non-coding upstream 307047 4158517 ~ 4159317 (+)
G78068 NA non-coding upstream 308499 4154743 ~ 4157865 (+)
G78283 NA non-coding downstream 718175 5205082 ~ 5207413 (+)
G78282 NA non-coding downstream 805848 5292755 ~ 5294206 (+)
G78397 NA non-coding downstream 2070326 6557233 ~ 6563936 (+)
G78408 NA non-coding downstream 2137794 6624701 ~ 6627742 (+)
G78409 NA non-coding downstream 2186896 6673803 ~ 6674290 (+)
G78111 pole2 other upstream 168180 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 641492 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 1106620 3322085 ~ 3359744 (+)
G77722 NA other upstream 1488270 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 2002043 2458445 ~ 2464321 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 965208 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2370447 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3107800 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3169400 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 4042947 8529854 ~ 8549968 (+)

Expression


Co-expression Network