tshz1


Basic Information

Item Value
gene id tshz1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31030011 ~ 31049206 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600856.2
CTGCGCTGAGAGCCAAACACAGGAGTTTATAGCGGAGCGATCGGTCCAGCCTGGATGTCAGAgtggcttttattttataaaacactaaatCACGCCCCGCCCTCAGGACTCCGAGACTCGGGGGAAAAGTCTGGGAATGTAGGTGGAAGCGGAGCTAGCCCGCTTTAGCAGAGCCGACACGCCACACCGCCACCCCCCCGGAGCGCTGTCCGGAGCCTAACCGAGCTTTCCTACCCGAGACCCGGGCAGAGAGCCTGCAGCAGCTCACCGACCAACTCTGGGTCAAATCTGTTTTACAGCTCATCCAGCAGATCCAGCGTTGTCTCTTCTGGTTTAAACATTTTTCACCATAGAAATCAACTACGGCAATAACTGTGAAGTTGATTTTTCGAGTTTTGGGACGTCTTTATGTTCGTGTCGCCTGGTTTGTTTTGAGTATTCTCACACCGTGGGAATTATGGACCTGCTACAGTCTTGATccacttatattttatttagcattttctgTATCAATCCCCGAGATGGTCTTACGTGGTTTTAGGTGCTAAAAAGTCGAGTTTGGATGAGCAGTGAAGCTCGGGACAGTGCCGGACACACCGAGCCGCTGCTGGCCGCCCCAGGAGCTCCGTGTGCGGGATAGAGGAGCCTTGTTTCCGCCGCTGAGTAGGAGGAGCAGCATGCCGAGGAGAAAGCAGCAGGAGCCGCGGAGAGCTGCAGCCTATGCGCCAAAGGTTGACATCAAGGGAGCCGCTTCTGACGAAGAGACTCTTCAAGATGATGGACTCTCGCTGGACAGCCAAGAGGCAGAGTATGTGTgtaatgaggaggaggaggaagaggaagaggacagCGTAAAAGACCCTTTTTCCCCTCGGGACTCCCCCCTCAGCAATGGCACTAACCCAGATGCTGGCTATGCTTCCCCACTCAGTGATGCTAGCGATCGAATTGCTGATTATAGGAGCACCTCTTccaaagaagaaaaggaagagctgCCCAGCTGCAAGGGCAATGGGGACGCCCTGAAGGACAGCTTGGCACAGATGAAAGCCGTCTATGCAAACCTGATTTCTGATGCCTCCTGGTCCAGATTTGCCATGGATATCATTAAAACAAAGCCAGCGTCCTCCAGCAGTGCCACAAGCCACACAGCCAGCACTACACCTACCAACGCAACTGACATCGCTGACAACAGCAACCATAGTCGAAAGAGCTCTGTTGCCAACAGCCTTAATGGAACGGCAGGCAGCTCCACCACCCCAGTCAGCAGTTGTGTcactaacaacaacaacaataataacagcagcaacagcagtgcCAGTAATGGTGGCAGTATATCTTATGATTGGCATCAGGCCGCTTTAGCCAAAACCCTCCAACAAACCCCTTATCACTTACTGCCAGAACCCAGTCTGTTCAGCACAGTCCAGCTCTACAGGCAAAACAACAAACTGTATGGCTCGGTTTTTACTGGCGCAAGTAAGTTCAGATGCAAAGACTGCAGTGCCGCCTACGACACACTAGTTGgacttactgtgcacatgaatGAGACAGGACATTACCGTGATGACAACAAGGACAAGGAGGAGGATGGAAGAAAGCGCTGGTCCAAGCCTCGCAAACGCTCCTTGATGGAAATGGAAAGCAAAGAGGATGCCCAGAAAGTGCTAAAGTGCATGTACTGCGGACACTCCTTTGAGTCTTTACAGGACTTGAGCGTCCACATGATCAAGACTAAGCATTACCAGAAAGTGCCTCTCAAAGAGCCAGTGCCAGCCCTGGCCACCAAGCTGGTGCCATCAGCCAAAAAACGATCCCTTCAAGACCCTCCGATTTCTCCATGCTCCCCGGAGTCATTCACAGGTTCCAGTGGAGCTGTGTCTGAAGTTGGGAAAGAGGGGAAGGGAATGGCAAATCCTTACGTCACCCCCAACAATCGCTATGGATATCAGAATGGAGCCAGTTACACATGGCAATTTGAGGCACGCAAGTCTCAGATTCTTAAGTGCATGGAGTGTGGCAGCTCTCACGATACTCTACAGCAGTTGACCGCCCACATGATGGTCACTGGCCACTTTCTTAAGGTCACAAACACTGCATCCAAGAAGGGCAAGCAGCTTGCGTTTGATCCGGTGTTAGAAGAGAAGGTCCAGTCAATTCCATTGCTGCCCACAACGACCAGGCTGCCTGTTCCCAGTCTTAAGTCTCAGTCAGTATCTCCTGCACTGTCTGCTGACTCTGATAGTAAGAAGGAGACTGAGGAGACAAAGATGGAGGTTGGTGAACTTTTGGGGAAAAATAtcaaggaggaggaagagaccAATGAGAAGGCAGACATGGACTCTGTATCAAACAGGTACCTTCGAGAAGAAGATCTTGAGGAGAGTCCCAAAGGCAGCATGGACATCCTCAAGTCTTTGGAGAACACAGTCTCAAGTGCCATCAGCAAGGCGCAAACAGGTGCACCCACCTGGGGAGGGTACCCCAGCATCCATGCAGCTTATCAACTCCAAGGATCCATGAAATCCTGCTTACTTCCGCCAACAGTTCAAAGTGTTCCTGTCCAGCCAGCCTTCAACAGTAACCTCCGAACCCTAGTTGCTGACTCTGCAGCAGAAATAAACCATCCACACAGTCCCTTATCACCCTCTACTAATAGGAACAATGTATCGGCAATGAAGGATCTGGTGGAGAAGATGACGGGAAAGGTCTcagtaaagaaagagagggaggaatgGATGGTGAGTGCTGAGCGGCCAAGGTCTGCATATGTACCGAATTCACCATCTGCAAAACTCCAGAAGGAGAGAGATGCTGTGAAAGCTGGAGAAACAGTACAGACCAATGGCATAAGTAAGATGGATCGAGATATTGTGTTCAAAGTTGAGCCTAAAGAGTCTTCAGTAGAGaatcaaaataatacaaaaaatggtGTAGAGTCATGCAGGTCGCTCCTTACTAATGGCAATGGTCTAGAGATCATTACTGATCATTCACCTGAGAGGCCTTTTCTCAGTCCTCTTAGTGCACTGCAGTCCGTCATGAATACCCATTTGAGCAAAGCCTCAAAACCAGTAAACTCTTCCCCTAATCCCCTGTCAGTGTCATACAAGATCAGCAGTAGTGTAATGGACAAGCCTGCATTACATTCCTCTTCCGCTAAGCCCAGTGAACCTATCAAGACTTACTTCTATGAGGACAGTGACCAACCCATAGATTTAAGGAAATCCAAAGCAAGCAAGAGCAATGTTGGCACCTACAGCAATACAAGCAGCCCCCCAGTAGTGACCCAAAACAACAATGAATCAGGGCCGGTTCATCCAGGTGCACCGTTCTTAAACCCTGCATCTTCAGTGAGAGAGAATGCACTGATGGACATCTCTGATATGGTAAAAAGCCTCACTGACCACCTCGCTCCCAAATCCTCAACTCCCTCTTCCATCTCTGAGAAATCGGACGCAGACGGCAGCATGTTTGAGGATCTTCTGGAAGACCTGTCGTCTTTGCAAAAGCGCAAAGGCCGTCAGTCCAACTGGAACCCTCGGCACCTGCTGATCCTCCAGGCCCAGTTTGTCTCAAGCTTAAGGGAGACTCCAGAGGGACGCTATGCCATGACAGACCTGGGTCCTCAGGAGCGGGTGCACATATGCAAGTTCACCGGCCTCTCAATGACTACCATCTCCCACTGGCTGGCCAATGTGAAGTACCAACTGAGAAGAACCGGTGGGACCAAGTTCCTGAAGAACATGGACTCCAGCCAGCCTGTGTTTCTATGTGGGGACTGTGCCTCCCAGTTCAGAAGTCCTTCATCTTACATTAGCCATCTGGAGTCCCACCTGGGCTTCAGCCTCAAGGACCTGTCCAAACTGTCGGTGCACCACCTTCTGGAGCAGCAGGCTGTCTCCAAGGTGATAATGGACAAAGTGGCATATGGCAGCCCCCTGCTGAACTTGACATCACTCGATGAAGACCTTAGCCCTGGCTCAATCTACCAGTGCAGACTTTGCAGTCGGACGTTTGTCAGCAAGCATGCAATCAAGCTCCATTTGAGCAAGACTCATGGGAAGTCACCAGAGGACCACCTGGTGTTTGTCACGCCATTGGAGAAAATGGGTAAAGAGGAACCCTGAGGACACTGAGGGATTTAAGGACAGCTGTCTAAATCGCTGACCGGTCTCATTGCACTAATCTAGTTTCTGCACTGGGCCTGAACTGAGCCAACGATAATCAGTCTTAAACTTTTTCTGTTATAAAACTGCCTGACTGGACCATGTTTCTTTGGTttgtttacatttgtttttgccAAACTTTTCCAATCctttgaaatgtatttatattctaTTTGTGCATGTACCTTAGTGATGgtttttattcttaaatgttctttaaatgaCTACTGTTTTTATGATGATAGTTTTGGCTGCAAAATTTGGACTAAAGAAATGTGCAAGAGCCTTTTGTTAAGGGAGGGTTTTGGGACTGTAAACTTTCTTTAAGATAAACTCCAGCGCGCAGTTTAATCCATTAGGTCAGAGTTATTTAGTCCTGGTAATTGAGTCCCTCTGCCTTGCACATATATGGCTTTCCCTTCTTCCAACACACCTGGTTCAACCAGTCAGCTCAAAATAATTGCTGTCCATGTCTTAAAAGAACCTTTATCATAAAATATCTAATATTGCCCAAAGAAAGGGCCAGATAAAtccataaaaacaaaatatatacaaattaagACTAATTGCGTGTCTTTTCTGTCCCAAAATCTTGTACTTCAGCCACACTGAGTCACCATGTAGGCTAAGCTAGTCACTGTTACATTAACATGGTCAAATGTACAAGTATGTAGCCTACCATTAGTTTGAACCATAATAGCTCTCTTATTATTCATATCCTCCTTATTCTGTATCGCTCTGAATCAATTACAGATATGAACGTGTCATCTAAGAGCAAAATGCTCATATAAATAGCATTATATCATGCTATAACTATTGCGCTCTGGAGTGCATTGTTAAGTGCAGTCTTACTTTGGGATGAAAGTAacagttctaaatatttttgttcCCATTTTCCTGaattgtcttaaattatatCCAGGAAGCATTATTTAAGGATCTCAGTGTGAAATCACTTTGTTTTCCTCAAATTATTAAATTTGATAGGCTTGCTCCTGTCGGATTGACGCTGGAGCAGTGAAGTATGCAACGttgaatattttttctttacagtaatCATCATTTGCAAAACATGTGTTGGTTGCAGAATCCTCTATTGGTGCTCTTCTGCTCTGATTGCACCCTGGAGGATTACAGTCAGTTTCTGAAGCATAGAACATAATCTTGTCATTAGAGACAGTCCAGCATCCTTTATATTTTAAGATGTGGGATTCTTGAACTTTTCTATCGTTATTTTCTatgtaaaaaggttaaaaagaaaACTGTGTAAATAGAGATATATGCAGTAGAGCCACATCTTTGTTTTTCTACAAGCTTCTCCGAGCTGGTTTACAGGAACCTGTGCTGGAAACCTGCAGTCAGTCTGATGCATGAagttgtgagtgaggttgagcaCAATGACTGAATATTTCCAAGTTTTGTTAATAAGGAAAAGTCTTTTTAGCAGTGGTTACCTTTTTTTCCTCagttgtaaaataaaattgaagCAGTAAAAAAGCG

Function

NR:

description
PREDICTED: teashirt homolog 1-like

GO:

id name namespace
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0032259 methylation biological_process
GO:0008380 RNA splicing biological_process

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600856.2 True 5669 mRNA 0.46 2 31030011 31049206

Neighbor

gene id symbol gene type direction distance location
znf407 LOC104944474,LOC104948785 coding upstream 38470 30942676 ~ 30991541 (+)
LOC103044961 NA coding upstream 91583 30922969 ~ 30938428 (+)
rpp40 NA coding upstream 137327 30883308 ~ 30892684 (+)
LOC103037625 LOC103037625 coding upstream 283148 30713604 ~ 30746863 (+)
LOC111193145 NA coding upstream 398379 30627847 ~ 30631632 (+)
znf236 znf236 coding downstream 104403 31153609 ~ 31238682 (+)
LOC103047815 galr1,LOC102797365 coding downstream 340245 31389451 ~ 31410793 (+)
coq3 NA coding downstream 422932 31472138 ~ 31478897 (+)
faxc faxc coding downstream 431426 31480632 ~ 31502591 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding downstream 475745 31524951 ~ 31540915 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding upstream 107721 30912883 ~ 30922290 (+)
G84906 NA non-coding upstream 130832 30897919 ~ 30899179 (+)
G84877 NA non-coding upstream 224269 30805201 ~ 30805742 (+)
G84870 pik3cb non-coding upstream 258928 30770601 ~ 30771083 (+)
G84858 NA non-coding upstream 322828 30704476 ~ 30707183 (+)
G84997 NA non-coding downstream 1204 31050410 ~ 31050652 (+)
G84998 NA non-coding downstream 1621 31050827 ~ 31051026 (+)
G85020 NA non-coding downstream 194273 31243479 ~ 31259853 (+)
G85021 NA non-coding downstream 198142 31247348 ~ 31253592 (+)
G85026 NA non-coding downstream 212343 31261549 ~ 31264054 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 414949 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1014831 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1951113 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1986272 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1988404 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 405778 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 700497 31749703 ~ 31805403 (+)
G85189 NA other downstream 774380 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1149977 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1387011 32436217 ~ 32441318 (+)

Expression


Co-expression Network