LOC103027561


Basic Information

Item Value
gene id LOC103027561
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10352414 ~ 10362045 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603051.2
TGTAGAGGGCAAATATTCACATTACTGACCATCACTTCACTTCATCCTACAGAGGGCCAAGGCCATACCAGGGCATACGGAATGAGGGTGGTACTCGCTGTCGCCGCCCTTGTGGCCATGGCCGTTGCCGCCATTGTCTCTCAGGAGGAGCTGGAATTTCATAACTGGAAACAGGAGCATGGTAAGAGTTATGATTCTGAGGAAGAAGAGTCTGAGCGTAAGATGATCTGGCTGAACAATCGTAAGCTGGTCCTGGAGCACAACATGCTGGCTGACCAGGGTCTCAAAAGCTACAGACTCGGCATGAACATCTTTGCAGACATGGAAAACCAGGAGTTCCAGGCCATGTTTAGCAACTGCGTGGAATCCCTCAATGACACTGACACTGACTCCCTCTGTACCTCTACATTCGTCCCGGAAAAAGAAGGCAGTGCTCTGCCCTGCAGAGTGGACTGGAGGAGGAAGGGCTATGTGACGGACGTGAAGAACCAGAGGAACTGTGGCTCCTGCTGGGCCTTCAGTGCGACCGGGTCACTAGAGGGTCAGATGTTCCGGAAAACCAGGAGGCTGATATCCCTGAGTGAACAACAGCTGGTTGATTGCTCCCGGTGTTTTGGAAACCATGGCTGTAATGGTGGTTTGGCAATCTGGGCCTTTAATTACATCAGGTCCAGCAAAGGCCTGGAGGCGGATTTTACCTATCCCTATAAGGCCCAGGACAGAAGATGCCACTTTAATCCATGGAAGGTTAGGGCTACCTGTCGTGGCACCGTGTGCCTGCCCAGAGGAAATGAGATAGCACTGAAGATTGCAGTCGCCAGAGTCGGACCCATTTCAGTATCCATAGACGCCTCCAAACACACCTTCCAGCTCTACAAGTCAGgtgtgtatGACGAGCCGCGCTGCAGTAACAATCGCCTGAACCATGCCGTCCTGCTCGTTGGTTATGGTCGAATTCGAAACAGGAACAGAAAGCAATACTGGCTGGTGAAGAACAGCTGGGGAACTAGGTGGGGTGAGAACGGCTACATAAGGATGTCCAGGAACAAGATGAACCAGTGCGGCATTGCCAAAAGACCTGTTTACCCTCTAGTTTAAAGCTTGGAGAAAAGGCCAAAGGTCTGATCAATCTGAAGTCTTCAGTCtgactggattttatttttcttatgcAGCagcttaaaagtaaaatataaaaagattacaaaaacaaaaagctaattcagatttttgtttgtgtttttaaaagaaaatgcagcATTATTTGTCAGACCATCAGAAGAGACCCTATGCTCTttcaaaaaaacttttaaaactataa
>XM_022672688.1
TGTAGAGGGCAAATATTCACATTACTGACCATCACTTCACTTCATCCTACAGAGGGCCAAGGCCATACCAGGGCATACGGAATGAGGGTGGTACTCGCTGTCGCCGCCCTTGTGGCCATGGCCGTTGCCGCCATTGTCTCTCAGGAGGAGCTGGAATTTCATAACTGGAAACAGGAGCATGGTAAGAGTTATGATTCTGAGGAAGAAGAGTCTGAGCGTAAGATGATCTGGCTGAACAATCGTAAGCTGGTCCTGGAGCACAACATGCTGGCTGACCAGGGTCTCAAAAGCTACAGACTCGGCATGAACATCTTTGCAGACATGGAAAACCAGGAGTTCCAGGCCATGTTTAGCAACTGCGTGGAATCCCTCAATGACACTGACACTGACTCCCTCTGTACCTCTACATTCGTCCCGGAAAAAGAAGGCAGTGCTCTGCCCTGCAGAGTGGACTGGAGGAGGAAGGGCTATGTGACGGACGTGAAGAACCAGAGGAACTGTGGCTCCTGCTGGGCCTTCAGTGCGACCGGGTCACTAGAGGGTCAGATGTTCCGGAAAACCAGGAGGCTGATATCCCTGAGTGAACAACAGCTGGTTGATTGCTCCCGGTGTTTTGGAAACCATGGCTGTAATGGTGGTTTGGCAATCTGGGCCTTTAATTACATCAGGTCCAGCAAAGGCCTGGAGGCGGATTTTACCTATCCCTATAAGGCCCAGGACAGAAGATGCCACTTTAATCCATGGAAGGTTAGGGCTACCTGTCGTGGCACCGTGTGCCTGCCCAGAGGAAATGAGATAGCACTGAAGATTGCAGTCGCCAGAGTCGGACCCATTTCAGTATCCATAGACGCCTCCAAACACACCTTCCAGCTCTACAAGTCAGgtgtgtatGACGAGCCGCGCTGCAGTAACAATCGCCTGAACCATGCCGTCCTGCTCGTTGGTTATGGTCGAATTCGAAACAGGAACAGAAAGCAATACTGGCTGGTGAAGAACAGCTGGGGAACTAGGTGGGGTGAGAACGGCTACATAAGGATGTCCAGGAACAAGATGAACCAGTGCGGCATTGCCAAAAGACCTGTTTACCCTCTAGTTTAAAGGTATTTACAGTTTCTACAGAGatcttagtgtttttttatttaacacacaGTTTGTAAATCACAGATAACTGATAATAATCTATATACCATTACTAACATATTTTGTTagataacaaaaataatgtagtagtttatatgtataaattctaaTAAATGATA

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603051.2 True 1318 mRNA 0.48 9 10352414 10362045
XM_022672688.1 False 1259 mRNA 0.48 8 10352414 10361816

Neighbor

gene id symbol gene type direction distance location
LOC103026974 NA coding upstream 15698 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 60121 10282665 ~ 10292293 (+)
LOC103026171 LOC108413038 coding upstream 99919 10242588 ~ 10252495 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 532969 9766166 ~ 9819445 (+)
trmt61b NA coding upstream 1718221 8623401 ~ 8634193 (+)
LOC111193128 NA coding downstream 302413 10664458 ~ 10666674 (+)
LOC103024809 LOC107689792,LOC105902344 coding downstream 365803 10727848 ~ 10764714 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 1215194 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 1448188 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1524191 11886236 ~ 11962874 (+)
G79341 NA non-coding upstream 4259 10345516 ~ 10348155 (+)
G79179 NA non-coding upstream 160199 10189740 ~ 10192215 (+)
G79193 NA non-coding upstream 186770 10160728 ~ 10165644 (+)
G79183 NA non-coding upstream 221097 10131019 ~ 10131317 (+)
G79174 NA non-coding upstream 239093 10107630 ~ 10113321 (+)
G79345 NA non-coding downstream 26359 10388404 ~ 10391520 (+)
G79334 NA non-coding downstream 39449 10401494 ~ 10423882 (+)
G79379 LOC108430231,LOC107583545 non-coding downstream 90365 10452410 ~ 10468725 (+)
G79381 NA non-coding downstream 115618 10477663 ~ 10558011 (+)
G79384 NA non-coding downstream 144292 10506337 ~ 10557504 (+)
LOC103029457 LOC108441045 other upstream 397376 9883006 ~ 9955038 (+)
spata17 NA other upstream 797689 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1802446 8529854 ~ 8549968 (+)
G78818 NA other upstream 1814732 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2623413 7656307 ~ 7729001 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 176034 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 439312 10801357 ~ 10814914 (+)
G79654 NA other downstream 1192637 11554682 ~ 11555139 (+)
G79717 NA other downstream 1539050 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1702799 12064844 ~ 12076211 (+)

Expression


Co-expression Network