LOC103025054 (slc16a12,LOC107669179,LOC107753457,LOC107758438)


Basic Information

Item Value
gene id LOC103025054
gene name slc16a12,LOC107669179,LOC107753457,LOC107758438
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12809667 ~ 12820803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604607.2
GTTTTCACCCTAGAGCAACCTGACTGACCCAGGACCAGCCAGACCCCCTGATAAACCCCTCCCTCAATGCTGCTCCACCAGATACCAGGCTCTGAACACATTCAGGAAAACAATGATGGAGAACttcacagagaacacacagaccagctgctccaccttccttccacacacaccttcacacacaccagtcagaTCTTCTCACCAGCACTGCAGCCTTCTGAAAGTCCAGGTAGCTTAAACCAGGCCTCACACGGTTTCAGCTCCAACTGACAGCATGACATCTCAGTAAAACCAGCCAACCATAAACTATAAAACAAGAAAAGCCAACAACCAACAACTGGTGCTGATTTAGGAATcagaacagcaaaaaaacagcaggaataCCGAGCAGCCCTGGAGGAAAGAGGAAAACGTGAGCCACAAAGTGCTTTAAAGGCAGTAGTGGAAAGTGAAAGCATGGCTGCAGGAGTGAAGAGGCGCTCGGCAGCGGCTGCTCCAGATGGAGGATGGGGCTGGATGATCGTTGCTGGCTGCTTTATTACCACCATCTGCACACGTGCTGTCACCAGGTGTgtatccatcttcttcttggaGTTCCAGATGCACTTCTCCAGCGATTATTCCAGAACTGCATGGATTCACTCTCTGGTGGACTGCACCACCATGCTCTGTGctcctctggGTAGTTACATAGGGAACCGCTTCTCCTGTCGAGTGGCGGTGATGGTTGGAGGATTGCTGTCTTCTCTGGGGCTCATTCTCAGCTCCTTTGCCTCTAGTTTGGAGTACCTCTATCTGTCACTAGGCATTCTCACAGGACTGGGCTTCGCTCTCTGCTACACCCCTGCAGTCGCCATGGTGGGCTCCTACTTCAGTGAAAGGAAAGCTCTTGCGTACGGGATCGCCATGTCCGGCAGTGGCATTGGGACATTTGTTCTTGCACCTGTGGTGCAGCTTCTAATCGAGCTCTACTCCTGGAGGGGGGCTCTCCTTATTTTAGGGGGGTTTGCTTCACACTTGTGTGTCTGTGGGGCCCTCATGAGGCCCTTGAATAGACATAGGCAGAATCAAGATGGTGAGGGCCGAGAAGAGGAGCTTAGCATGCTAAATGCTAAGTTAGCAGAAGCTAACCTGCACATGGAATTGAACTTAAAGGATAATTTGGAAATGGCAACGTTGGATTTCGGTGGTGTTAATATAGACAGATTGAGCAATGGTGGGCTAGAAGACAAGATAATACAAAAAGAAGAGCAAGATTTAGATTCTACCCTTGAAGAGAAAATATGTGGAGAACCTGTTGAAAAGGATCTTGtggaaacagatacagaaatgATGGAGAAGACTAAAGACATTGAGTCAAATCCTGGAGACACAAAAGTCATTTTTATGAACACAACGTCTACAGATCTAAAgctaaatacaaacagcaaatcGACCAACTTAAAGGACCCAACAGCTTCAGAGCAGAAcactaaattaaacacaaatctTTCAGATACTGTTGTAGTTGAATCAGTGCTAATTGGCTCAAAGCTACCTGATTCAATGCTACGTCAGTTGGTGCTAAGTGATCCAGGGCGAGCTGACTCAGAGCTGAACAGTTCAAAGCTACCTGAGTCAATGCTAGTTCATTCTGCACTAACTGACCCAATGCAAGCTGACTTAAAGCTAATGGATTCAAAGCTACTCAAGACAGTATTAATTGACTCTGTACTAAATGATTCAATGCGAGCTGACTCAGAGCTAACTGATTCAATGCTAGCTGGCTTAGAGTTAAATGATTCAAAGCTACCTAagacaatgctaacagtgctcaGTGACTCAAGGGAAACTGACTCTGAGTCAGtactacactgctcaaaactAACTGACACCATGCTAATTGACTCTGCACTAAATGACTCACTGCAAGTTTACTCAGAGCTAATTGATCCAAGAGGAGCTGACTCAGAGCTAATTGATTCAATCCAAGCTGGCTTAAGGCTAAATGATTCAAAACTACCTGAGACAATGTTAATTGACTCTAAACTGAATGATTCAATGCAAGTTTACTTAGAGCTGACTGATTCAGGACGAACTAGCTCAAAGGTAAATGACTCAAAACTACCTGAGTCAATGCTAATTGACTCTGCACTAAATGACTCAATGCAAGTTTACTCAGAGCTGATTGATTCAGGGCGAGCTGGCTCAGAACTAAATGATTCAAAGGTACCAGAGACAATGCTAATTGACTTTATGCAAACTGACTCAGAGCTAACCGACTTAAAGCTACCTGAGTCAAAGCTAGTTCAGTCTGTGCTAAATAATTCTATGCAAGCTGACTCAGAGCTTACTGGCTCAAAGCTACCTGAGTCAATGCAAGTTTCCTCTGCACAAACGGACCCAATGCGAGCTGACTTAGATCTAAATGACTCAAAGCTATCTGAGGCAAAGCTAGTTTACTATCCAGTGCTAGCTGAATCAAAGTTAgttgactccaaactgctataTGAAGTGGCCTTCTGTGAACGTCCAGGTTTCCCCGTCAAGAACGAAGCTCCAGGAGAAAGCAGAGATCAAAACGGTTGTTTCTTCCTGCCGTCCACAGAGGAGTATAGCTTCCTGCTAATACCGGACTTCCTGCTACTGTCGGTGTCTTTCCTGTTCCTGGCGTTCGGATGCAGCGTGCCGTTTGTGTACCTGGTACCGTATTCTCTCAGCATCGGTGTCAGTCATCAGCAGGCTGCGCTCCTCATGTCCTTTCTGGGAGTGATGGGTATCGTCGGGAACATCACTTTCGGTTGGATTTCAGACAGAAGGTGTTTAAGGGCATATCGAATTGTGAGCTACTTGCTTGCAGTGGGGCTTGAAGGACTGAGTTGCCTGTTTGTGCCCTTGTTGTGGAATTTTTCGCTGCTGCTACCCTTTTCCCTTTTCTACGGCTATTTCGACGGGGCCTATGTGGCACTCCTTCCTGTGGTGACCTCAGACACCGTAGGTCCTACTTACCTCTCTTCAGCACTGGGCGTGGTCTGCTTCCTGCACGCCATTCCCTACCTCATCAGTCCACCAATAGCAGGTTGGCTGGTGGATCAGACTGGCTCCTACACAGCTGCGTTCCTCCTGTGTGGATTTTCTATAATCTGCAGTGCGTTGATTCTGACCACCTTCAAATTGAGTCACCGCTGCAGCAGAGGGTCCTCACACTCTTACTAAACACTATAGACTTTGACCATGTTGGAGCAAGATATCTCATATTGGAACTAAATAAGGTATTATACCAAAATTATACCTGCCAGGACTGGGGCAggtgcatctgaaaaaaaaattaatatcatggaaaagtttgtttttgtttgtaatttaagaataaaaaatagctaTACTGTCATACCTTTTAATCATCACCACATATACAGAACCCGTCAACAATTTAAACACaccttttaatttagtgtttttctttagttgttTATTATGGAGTTGTTTgaacaaaatcactctcacatgaagagatctcaccagctctattcttgccagtttcatgTTTACACTGATCGTTTAACACATGTTACGGTTGGCTTTGTGccaaaatggcaaaacatgaacaagctagACTGTGCTTAACTGCAATGGAAACACATTAAAACTTATTATTTGAAAATA

Function

symbol description
slc16a12 Enables creatine transmembrane transporter activity. Involved in creatine transmembrane transport. Located in plasma membrane. Is integral component of plasma membrane. Implicated in cataract 47.

NR:

description
PREDICTED: monocarboxylate transporter 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604607.2 True 3645 mRNA 0.45 7 12809667 12820803

Neighbor

gene id symbol gene type direction distance location
LOC103046040 NA coding upstream 61643 12741359 ~ 12748024 (+)
LOC103045432 NA coding upstream 230435 12565112 ~ 12579232 (+)
exo1 LOC107744706,LOC107081139 coding upstream 260577 12533857 ~ 12549090 (+)
jade1 jade1 coding upstream 471292 12315094 ~ 12338375 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding upstream 496729 12290397 ~ 12312938 (+)
LOC103047786 NA coding downstream 150628 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 168928 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 235129 13055932 ~ 13062962 (+)
arhgef33 arhgef33 coding downstream 245139 13065942 ~ 13084209 (+)
ecd NA coding downstream 330446 13151249 ~ 13163591 (+)
G80031 NA non-coding upstream 141675 12581800 ~ 12667992 (+)
G80024 NA non-coding upstream 267018 12513002 ~ 12542649 (+)
G80028 NA non-coding upstream 277818 12528626 ~ 12531849 (+)
G80026 yipf4,LOC106576945 non-coding upstream 286567 12522704 ~ 12523100 (+)
G79924 NA non-coding upstream 526086 12281845 ~ 12283581 (+)
G80114 NA non-coding downstream 1155 12821958 ~ 12823957 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 54970 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 134513 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 166660 12987463 ~ 12987842 (+)
G80186 NA non-coding downstream 228992 13049795 ~ 13051000 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 530161 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 733456 12064844 ~ 12076211 (+)
G79717 NA other upstream 904282 11901095 ~ 11905385 (+)
G79654 NA other upstream 1254528 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1994753 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 901098 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1105066 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1692607 14513410 ~ 14534923 (+)
G80648 NA other downstream 1905124 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1909705 14730508 ~ 14798604 (+)

Expression


Co-expression Network