LOC103022442 (LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160)


Basic Information

Item Value
gene id LOC103022442
gene name LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16721225 ~ 16729066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604621.2
ATTAAAGAGGATTATGGGATAAGATGTCTGTGAGGAACGACGTTCGGCCCGGCcgagagtctctctctctctctcggggaAACAGACGGGTCATGCCGTCTCTCCTCGCCGCCAGCTGCTCTGCTGAATCAGGCTTTTCCTCCAGTGCAGGATGAAGTGGACTCTGCTGTACCGGTACTGGTACTGGTTGCTGTATTGCCAGACGCTTCTCTGCAGCACCGACACCCAGGAATCCGACTATCAGGAATCGGATTCAAGTCAAACAGACTCTTCTCAGACAGACACGCATCTCATCAGCAGCGGCCTGATGCAGTGCGGGGAGTACAGTAACGAGGTGATGCCAAACGGGCAGTGCCGCCTGATGGCCACGCTGCCCCAGCTGGAGGAACAGCGCTGTCCTGACATGTTCCGCTGCACAGACGAGGTTTCCTACTGGCTACATGAGAACGAAGAGCGCAAACAGCAAATGCAAGACCTGAAGGAGACAATCTCAGAGCTTCAGGAGGAGCTGAGAAACCACAGACATCGCATCAAAGTTCTGGAGTTACAGAATGAAGAGAAGAATGGTCAGAATTCTTCACTGGAGCAGCGATTCCACGCCCTGGAACAGATCTATGAAGAAGCCAATACTCTGCTTCACGTCCACGGGTCTCTCATCTATGACATGCAGGCGCAGATCCGGAACCTCACCCTGGCCGTGGAGCGTGTTCGGCGTAACCCCGGCTGCATGATCAACATCGTCCGCACCAGCCCGCTGCTCAGCACCCGCGACACCCTGCACCCCGaGGTTCAGCACATACGGAACTGTCCAATCGACTGTGCCTCACTGTACTACAATGGAGTTCACCGATCTGGGATTTTTGCTGTAGTCCCATCATTAGGATCAACACCAGTGGAGGTCTACTGCGACATGGAGACTGATGGTGGTGGCTGGACCACTTTCCAGCGGCGACAAGATGGCAAGGTAAACTTTAATCGCAGGTGGACGGAGTACAAAGATGGTTTTGGAGATCTGCATGGTGAATTCTGGTTGGGGAATGATAACATTCATTACATTTCTAGTCAGGGTGATTACTGCTTACGCATCGACCTTGAGGACTGGAATGGCAAACACAAGCATGCTCTCTACCAAAACTTCAGGATTGAAGATGAGGAAAACCAATATCGTCTCCATATCTCTGGGTTTAGTGGGACGGTCGAGGACTCGTTTAGTTGGTACCATGACAAGCAGAGCTTCAGTACACCGGACACGGGCAATATCTGTGCTGAAATTTCTCATGGAGGATGGTGGTACCATCAGTGCTTCTTCACTAACCTGAATGGCATTTATTATAAAGGGGGGCGCTACTCTGCTAAAGGGAAGAACCTGCTGGGTCCTGATGGGATTGTGTGGTACACCTGGAAAGATTCAGATTACTACTCACTAAAGAAAGTCAGCATGATGATCCGCCCACGGACCTTCAAGCCCCGCCTTTCACCATGACAACTGATGCAATTTACCACAATATTAGAAACAAGTTCAATAGAGAGTTTCCAACTTTTATGTTGGAACTTCCTGTCCTGGCCCACTATGGAATCCCACTGAACATTTAACATCTGATGATTGCAGATATCAACTCCTTATCTGTAGAAAATATCATTAATACAATTATCAATTCCTATTTTAATACACATATGTATATAGTTGTAAATCGTATTGAATAATTATGGTAAAATAGTCACTGGACCTTATTCAGTGCTCGGTACATCATATACTGTGTATATCTACTGCTCAGTTTTACTGTTAGTCATAAATAACCGTATTAatttcaacaaaataaaaaacatttgaatgttGAATTAATgtcaaaattgtttttttactgctttGATAATGTGTGAATGGaaaaccaataaataaa
>XM_022672825.1
ATTAAAGAGGATTATGGGATAAGATGTCTGTGAGGAACGACGTTCGGCCCGGCcgagagtctctctctctctctcggggaAACAGACGGGTCATGCCGTCTCTCCTCGCCGCCAGCTGCTCTGCTGAATCAGGATGAAGTGGACTCTGCTGTACCGGTACTGGTACTGGTTGCTGTATTGCCAGACGCTTCTCTGCAGCACCGACACCCAGGAATCCGACTATCAGGAATCGGATTCAAGTCAAACAGACTCTTCTCAGACAGACACGCATCTCATCAGCAGCGGCCTGATGCAGTGCGGGGAGTACAGTAACGAGGTGATGCCAAACGGGCAGTGCCGCCTGATGGCCACGCTGCCCCAGCTGGAGGAACAGCGCTGTCCTGACATGTTCCGCTGCACAGACGAGGTTTCCTACTGGCTACATGAGAACGAAGAGCGCAAACAGCAAATGCAAGACCTGAAGGAGACAATCTCAGAGCTTCAGGAGGAGCTGAGAAACCACAGACATCGCATCAAAGTTCTGGAGTTACAGAATGAAGAGAAGAATGGTCAGAATTCTTCACTGGAGCAGCGATTCCACGCCCTGGAACAGATCTATGAAGAAGCCAATACTCTGCTTCACGTCCACGGGTCTCTCATCTATGACATGCAGGCGCAGATCCGGAACCTCACCCTGGCCGTGGAGCGTGTTCGGCGTAACCCCGGCTGCATGATCAACATCGTCCGCACCAGCCCGCTGCTCAGCACCCGCGACACCCTGCACCCCGaGGTTCAGCACATACGGAACTGTCCAATCGACTGTGCCTCACTGTACTACAATGGAGTTCACCGATCTGGGATTTTTGCTGTAGTCCCATCATTAGGATCAACACCAGTGGAGGTCTACTGCGACATGGAGACTGATGGTGGTGGCTGGACCACTTTCCAGCGGCGACAAGATGGCAAGGTAAACTTTAATCGCAGGTGGACGGAGTACAAAGATGGTTTTGGAGATCTGCATGGTGAATTCTGGTTGGGGAATGATAACATTCATTACATTTCTAGTCAGGGTGATTACTGCTTACGCATCGACCTTGAGGACTGGAATGGCAAACACAAGCATGCTCTCTACCAAAACTTCAGGATTGAAGATGAGGAAAACCAATATCGTCTCCATATCTCTGGGTTTAGTGGGACGGTCGAGGACTCGTTTAGTTGGTACCATGACAAGCAGAGCTTCAGTACACCGGACACGGGCAATATCTGTGCTGAAATTTCTCATGGAGGATGGTGGTACCATCAGTGCTTCTTCACTAACCTGAATGGCATTTATTATAAAGGGGGGCGCTACTCTGCTAAAGGGAAGAACCTGCTGGGTCCTGATGGGATTGTGTGGTACACCTGGAAAGATTCAGATTACTACTCACTAAAGAAAGTCAGCATGATGATCCGCCCACGGACCTTCAAGCCCCGCCTTTCACCATGACAACTGATGCAATTTACCACAATATTAGAAACAAGTTCAATAGAGAGTTTCCAACTTTTATGTTGGAACTTCCTGTCCTGGCCCACTATGGAATCCCACTGAACATTTAACATCTGATGATTGCAGATATCAACTCCTTATCTGTAGAAAATATCATTAATACAATTATCAATTCCTATTTTAATACACATATGTATATAGTTGTAAATCGTATTGAATAATTATGGTAAAATAGTCACTGGACCTTATTCAGTGCTCGGTACATCATATACTGTGTATATCTACTGCTCAGTTTTACTGTTAGTCATAAATAACCGTATTAatttcaacaaaataaaaaacatttgaatgttGAATTAATgtcaaaattgtttttttactgctttGATAATGTGTGAATGGaaaaccaataaataaa

Function

NR:

description
PREDICTED: angiopoietin-related protein 7-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604621.2 True 1901 mRNA 0.47 7 16721225 16729066
XM_022672825.1 False 1883 mRNA 0.47 7 16721225 16729066

Neighbor

gene id symbol gene type direction distance location
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding upstream 8184 16687918 ~ 16713041 (+)
ect2l NA coding upstream 112768 16594547 ~ 16608457 (+)
ccdc28a ccdc28a coding upstream 127652 16586187 ~ 16593573 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 181765 16518216 ~ 16539460 (+)
tedc1 NA coding upstream 234827 16471855 ~ 16486398 (+)
LOC103031040 fam150b,LOC108425626 coding downstream 31757 16760823 ~ 16767006 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding downstream 53471 16782537 ~ 16838704 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding downstream 787906 17516972 ~ 17519541 (+)
asap2 asap2,LOC107707693 coding downstream 1025487 17754553 ~ 17876082 (+)
iah1 iah1 coding downstream 1168891 17897957 ~ 17902838 (+)
G81190 NA non-coding upstream 1790 16716995 ~ 16719435 (+)
G81124 NA non-coding upstream 39293 16678648 ~ 16681932 (+)
G81074 NA non-coding upstream 58609 16569003 ~ 16662616 (+)
G81197 NA non-coding downstream 754 16729820 ~ 16730174 (+)
G81220 NA non-coding downstream 111158 16840224 ~ 16845728 (+)
G81224 NA non-coding downstream 135045 16864111 ~ 16864542 (+)
G81243 NA non-coding downstream 250351 16979417 ~ 16982929 (+)
G81282 NA non-coding downstream 301997 17031063 ~ 17031359 (+)
G80857 NA other upstream 1137894 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1517438 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1886146 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1918193 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1922621 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1298241 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1731057 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 1782556 18511622 ~ 18520947 (+)
G81704 NA other downstream 2201172 18930238 ~ 18930754 (+)
G81761 NA other downstream 2936670 19665736 ~ 19666047 (+)

Expression


Co-expression Network