LOC103032442 (LOC108425610)


Basic Information

Item Value
gene id LOC103032442
gene name LOC108425610
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18436289 ~ 18440089 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605081.2
CATGTCCTTTTATGGTCAGTGACGTAACTGGCCATCCTCAGCCTCCTCTTAAACGCTTCAAACACGCGGGGCTCGCGACTCTGACACACGATCGCGGCCGAGGGGGATCCGCCGCACGAGTCCTCCCTGATCATGTCCATTAGAGCCGAGTTATAATAATGCCCGAGTCTGCCGAGCCTGAACTCACACAAGAGCAACTTTTAAACTCGGCTAAAAATGACTTCCAAAACTGTGGATAAAGTCGCCGAGTCGCTGAGTGATTTCCTGCGCTCTATTCCTGCTTATCCTATGGATGAGATCCCCCCATCGTTCGGGGAGGCGGAGGGAGGTGGTCTGAGCCCTGACACTTTTGGTGTGGAGAAACAGAACCTGGACTTTTCAGACTCCCAGAACTCGCCTCTCTCCTACACTGGCAAAATCTCTATTGACTCTCAGTTTGCCCAGGGCAGCTGGACTCAGGAGGGTCTAATCAGCCTAGTGTGCGCGGACGTAGAAGGGAAGACTACTGCCTCCTCCGGAACCACAGACCTCTCAGGGGCTCCGGGGTCCTCTCAAGGGCCCGAAAAGGCCCCACTCTCGTCCGCCATGGAGCACATGTACACCGCGCCCCCTCCTTACACCTGCAGCGCTGATGTCTACCAGGACCCCTCTGCGTACTCCTCCGCCACATCTTGTGCAGTGGCGCACCCGTGCGCCATGTCCTATTCCCCCGCGCCCAAACCCACTGTGGACAGCACGCTCTTTTCCATCCTGCCGGATTACGGGGGCTTTTATCAGAGCAGCAGCGGCCCACGGGACGTCCCGCCTCTCCTCCAGGACAGAAAGCCCTTCTCGTGCTCGCTGGAGTCCGTGCGCGTTCCGCCGCCGCCCCTCACGCCCCTCAACACCATACGCAACTTCACGCTCGCGGAAGGGCCGCGTGCCCCCCCGCGCCTCCTCCTCCCACCTCCTCCCCCGCTTGCGCACGCCGCCCCGCTGCGCCCTATCGCGCGCCCCCGCAGGTACCCGCCGCGCGCGTGCAAGACGCCCGTGCACGAGCGGCCGTATCCATGCCCGGCCGAGGGCTGCGACCGCCGCTTCTCGCGCTCCGACGAGCTGGCGCGCCACGTGCGCGTGCACACGGGCCACAAGCCTTTCCAGTGCCGCATTTGCATGCGCAGCTTCGGCCGAAGCGACCACCTCACCACGCACATCCGCACGCACACGGGCGAGAAGCCCTTTGCATGTGACCTGTGCGGCCGCAAGTTTGCCAGGAGCGACGAGCGCAGGCGCCACGCGAAGATTCAccagagacagagcgagaggcGCGAGCGCGCGaatcagcaacagcagcagcagcagaaccagcagcaccaacaacagcagcagcagcccgcCGAGGGCGCGAGGTGAGGGGGCGGCTGCTGCCGGACACATAATGGCACGAGCCTCCGTTATTATTAGCACTGGACAGCGCAGTGCTGACCCGTGAAGGCAGCTTTAACGTGTGTGACCGTGTTTACCTTTTCACTGTTATTCTGTACCGACCAGTGGTTCTCAGGACTGGACCTGCCCTCTATACCTCTGCCCTGCCGGTTCCAATGCACAACTGATCTAATCACAACTGATGTAACTGATCCATTAGTTCACAGGTTACAAGGTTAAACTGTGTTACAACAGGAAAACACGAAAATTTGCCTGACAGGGTGTTCCAGGACCATGGTTTACTCAAACTATGAAACAAAGGGTTTATGACTGCTGAAACAAGCACGGTTAAGCTGATTAACCATTTAAACCAAGCTGGTTGGTCAGCAATGCCAGAACGCCCAAGCATAACCAAAATATATGCAACATACACTTTGCTGGTCAAAAGCCAGACGGGTTGACTAGTTTTTTGTCTTAGCACTGGTATGATATGAACATAACACAACATAACAAAACAACATATATCTTGAAAGTGCTTTTTAATACATACATTTGGGACAAAACTCTTCAAATATTCCTCTTCAGCTTCATGTTATGGTTCAGATATGGGCCTGACTGACATTAACATGCTGTTACTGACACTGGGAAACAATTACCAATAAATTACCATTCTTATAACATTGGCTGATATCATTtacaaatacattatttaaaaaaaataaaggacagGGCGGAGTTAAGTGACTACACACACTGTAGTATGTTTTAGGgttcagtacacacacacattaagaaaaatatttttaatttaaacttcCTGGAAATGAGACTGTACATTTGAACATTTTAGGTCATGTTCTGACACGCCTTTGAGTATGATTACAGGGAtaattacaaatgaaatgtgccTTGTTGgaattttttttgatgatgggAATATTAGCTAATATTATGAAGTGTGTATACGTTGACTGTGCTCTCTTCATCCGAATGTAGGCAAATTTTATCATGTTCATACTCTGACATTTTGGAATGTTAAAACCACTGGTCTGTTTTTTCTGGAAGCTTCTGTTTACTGTAACATGCTTTGTATATTCGGGTTCCTaaaactgaactgtttaaaaGTCTACTGCTGAACCTTTGATGACTGATCACTGATAATGTTTACGACGATTTTCAGATAAGGGTGGCTTGTTGTATAGAATGAAACGATACTCAAGATTCTGTTTTGAATCCGCCATGTCGCCTTTTTCTGAACTGTCCCTATAATACCAGCTCTGACTATTTTTGCGCTGCCCTGTTTCTGAAAACTGAGCCTTTACTGAGAGCTTTAAATTGTtgttctttattcattttgtacatAAGAGACATGTGGCTAGATCTGTTACAAGATGTGAAACTGCTACTGGTTTATGTGTATACAGaataataaacacactggaTTCTTCACAGAGGCCAGCCATTGTGGCAAGAA

Function

NR:

description
PREDICTED: early growth response protein 2b-like

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042552 myelination biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005488 binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09203 EGR1; early growth response protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605081.2 True 2878 mRNA 0.50 2 18436289 18440089

Neighbor

gene id symbol gene type direction distance location
LOC103046791 NA coding upstream 24467 18349742 ~ 18411822 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding upstream 94006 18335100 ~ 18342283 (+)
LOC103038992 NA coding upstream 120999 18308247 ~ 18315290 (+)
eprs eprs,LOC107662594,LOC107679779 coding upstream 130195 18284577 ~ 18306094 (+)
iah1 iah1 coding upstream 533451 17897957 ~ 17902838 (+)
zfyve28 zfyve28 coding downstream 41590 18481679 ~ 18497039 (+)
LOC103034157 LOC108425685,LOC108269929,LOC107719399,LOC107664487,LOC107586877,LOC106610886,LOC106580683 coding downstream 63102 18503191 ~ 18510469 (+)
mrpl35 mrpl35 coding downstream 83665 18523754 ~ 18528689 (+)
hspa4l hspa4l,LOC107561683,LOC107586823 coding downstream 110932 18551021 ~ 18567654 (+)
plk4 plk4,LOC107703461,LOC107561682,LOC107664465,LOC107718857,LOC107586821 coding downstream 128579 18568668 ~ 18579571 (+)
G81466 NA non-coding upstream 159099 18276863 ~ 18277190 (+)
G81465 NA non-coding upstream 169805 18266219 ~ 18266484 (+)
G81460 NA non-coding upstream 225948 18209785 ~ 18210341 (+)
G81452 NA non-coding upstream 299083 18136612 ~ 18137206 (+)
G81446 NA non-coding upstream 341191 18076372 ~ 18095098 (+)
G81537 LOC108425611 non-coding downstream 980 18441069 ~ 18442711 (+)
G81539 NA non-coding downstream 7299 18447388 ~ 18500711 (+)
G81547 NA non-coding downstream 30318 18470407 ~ 18471571 (+)
G81540 NA non-coding downstream 35028 18475117 ~ 18498878 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding downstream 105380 18545469 ~ 18550207 (+)
cmpk2 cmpk2 other upstream 399215 18027307 ~ 18037074 (+)
G80857 NA other upstream 2852958 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3232502 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 3601210 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 3633257 14788602 ~ 14803032 (+)
LOC103035760 rtkn2,rtkn2a other downstream 20034 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 71533 18511622 ~ 18520947 (+)
G81704 NA other downstream 490149 18930238 ~ 18930754 (+)
G81761 NA other downstream 1225647 19665736 ~ 19666047 (+)
G81763 NA other downstream 1233038 19673127 ~ 19673638 (+)

Expression


Co-expression Network