LOC103028568


Basic Information

Item Value
gene id LOC103028568
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24684330 ~ 24698963 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606493.2
ATGGAAAGTAACTTGGgatttttttttttggcagaagAAAAGTGTGGTAGAGAAAGAAATTCCTGCCTCAAAATGAACTCCTGTGCAGGGCTGATTCTCATCCTGCTGGGATTGTTTTTAAAGGCTTCTTCAGAGGAAATATCAACAAATGCCTACTATCTGGAGCTTCACATAGAAGCAGAAGCCTATGAGAATTTTACAGAGCtgcttaaaaaactaaatttaaatgtCCCTGATGGCCAGAATACTGCAACTGTACAAAACATTAGCATAACAACagAATGTAACAGTGACTCCTCAGGACAGGTAAATTGTTCTTGCAATGAAAACTACACTTGGAGTGATGAAGTGTGTAAGAACTACACCCAATGCTGTACAAACGACCAAAACAATAAACTGTGCACATTTAAAACTCCAAACCCCAGGGCTATGTgtctacataaaaatacagTTCTAGTCAATGGATCATTTACCGTCCTTGCTGAACCATATGTCCGTTACTTTGATGATCCTGCAAGTAAACAATATCAAGACTTTGTCAAGAACTACACTGAAAAGcTGGAAACCATTTACAGTCGATTGACCTGGTTTGACACACTGAAGATTACAAAACTCAGACAGGGCAGTGTAATTGGCGAATTTTGGATGATGATAACTTCTCCAGAAAGATTTGTTTCAAAAGATCTGGAGAATGCAACTTCAACTTTGCAATTTACCAGCAATGCAACTTTCGACCTTAATGTAACAGGAGTTGTAAAAATGACCATGAATCCAGCATTCCAGAAAACACTTAATTATAGTGCTTCTGTCAATATAACATGTACTACACCAGAAGATCTGGGTAAACCCGAGTGGCTCTTCCAACAAAATGCATCAAACCCGAAGCAGATTACAAGTGGTCTTGAATCTACAGTGATTAATAGTAATTGCAACAGCACTGTTTATATTAAGGCAACTACAGAAGTCTGGAAAGGAACATATAAATGTTCATACACAAAATCTAACATAAGATATATTGCCAGTCAATATTTGGACATAGCACTGTTGCCCAGAATTTTTAGTACAAGTGACCCCCAATTTCCAGACTGTAGACAGAGCCAAAAAAGGTTTCAAATAAAAGTTCAATGTATAGTTCCTGACGCAGGAGAAGCCTACCAAATTGACTGGAATGACAAGTCCATTACAAAGGAGCAACCTGCACTTCTAGGAAATGGACTGATTTCTTACCAAGcctataaaattatttattgtgaTGAAAATAAGGAGAACACTTCAGCtacatgtacatttaaaaatagaaacaatCAGACTGCTAATGCcacaataaacattaatatCATACATGCAACCACAAAGGTTTGCCCGAAAAACAGTGAATGGGCAACTGCAAAGGCTGGATTCACTGCAGAGAAGTTATGTGATTTCGGCTCTGTTGGTCTAAAAACAAGAAACTGCTTATCAAATGGCCAGTGGGACAATGTAACCTCTATGTGTGTAACCCGAGACCTCAGTGACCTTTTGAATGATGCTAAGGACCTCCAAAGAGGACTTGGGATTGTTAAGGAAAATGCATACAATATATTTGATCGTTTGAGGATATCAACTGAACAGCAAACTGTAAACTCGTTTGCAAATGTTAATGCTTCTGTGGACGTTCTGGCAACCATAACCAATGCATCTAAAATACAGGACTCTCAATGGGATGCGAAAGTGCTCTCTGTTATTGCGAAATCTACAAGCAATCTTTTGAATGGCAGCCTAAATGACAGCTGGAAAAGTTATAACGTGAATGAAAGTTTGGCTAGTACATATCTACAAGCTATAGAAGACGTCATAAATCAAACATATCTACCTACAGGAGACACTGACAATGACCTTATACaagaaaatgtacaaataactatatataaagGATCTGACGCAAATTCAACATCTATCAACAGTTTCAAGGTCAATGCCACTTGTCAAAGTAACTCTCCCACTGTGCAAACTGCAATCAAGAATCTTGCAAGCAAGTTACCAAACAATCTCAACAAACAAGAAACAGATCCAAGTGATATCATATTATCTGTTATTGCTGACAATTGTAACAAAATCAAACTTGAGCTTCGGAAAGACAGACTCCCAAATCATGAAATGTACTGTGTGTTTTGGAATTTTAACACATCTCAGTGGTCTGACGAAGGGTGTAAATGGGGAGGTGTAGACAATCCAAATATCTGTGAATGTGAACACTTATCTGCTTTTACAATTCTGATGGCTAAAGAGCCTATTAAGTTATTGTACAACGAAGAGCTAACGTACGCAGGACTGGGTCTCTCAATCGGTTCTCTCACTCTGTGTTTAGTCATTGagtttttagtgtggaatgCAGTGGTTAAGTCCAATATCGCCCACTTTAGGCACACTGTCTTGGTCAATATAATGGTTTCTTTGTTAATAGCAGACTGCAGTTTTCTGGCAAGCCCGACTCCATCCTCAAACCCCTCAAACTGGTGTTTGTCTCTTACAGTTATGAAGCATTTTTGCTActtggctgtttttttctggatgatGTGTCTTGGTTTGGGTCTCCTGCACCaagtaatatttgtttttgttcacTTGAGGAAAAAGGTGTACTTGGGATTATGCTTTTTCCTTGGCTATGTCTGCCCTTTACTCATTGTAGTAGTTACTTTCATCTCTCATAACAATGGTGCTACTGGGAGCTACTATTCTACAGAAACCTGTTGGTTGATGTATAAGGGTGTGTTGAAAGGGTCAATCTATGCTTTTCTTTTACCAGTGTTTGTAATTGTGTTTGTGAACATGTTCACCATGGCTATAGTCATCAGCAGGATCCTAAAACCCACTTTATCAGAAGGAAGCAGTCATGATGAGAAGGAGGTTGCGAGAAGCATTGTTAAAACAGTTGTCCTCCTCACGCCTACCCTTGGAATAACCTGGATTCTGGGACTTTTTATGCAGATGCTTGACCTCACAAAGCAACCTTATGCCCAAATTGTGAATTATGCTTTTACCTTTTTCAACTCCTTTCAGGGCTTCTTCATACTTCTTACAGGATGTTTTGGAGAGAAAAGGGTTCGAGATGCTCTGCTTAAACGTTTAAGATCACAGCAATCTGTGAACTACAAAAGTGAGAGCTCAACAAGAATGACATCAATTACTAAACAGAAGTAACTTCATTGCTTTGCAAAGGTTTTCCTGGTCCATATGCAGTTTGTCTGTACTTGGTGACAAATTTCAAGACTGTGCAGCTATAAAACAGTGTGGCTTACTTTTGTCTTGTTTATTACTTCTATACTGTAAAAATCCAATAGTGAATTGTGTATTacaaaatagctttaaaaatgtatacgGTAATGGCTGAAAGAGTTGGCACCCCAGAAATTCTTTCCAGATTACAGGTGTTCAGTGGGATTTTGATTCAGATTCATTGCTGCCCGTTTCACAACTCTGCAGCACTTTGTCTGCATCCATCTCTATGTGCTTTTTGAAGTATGTTTGGCTTCATTATCCagctggaagacccatgacctagGACACAAACTTACCTTTCTGACACTTGGTCCTACATTGCAACTCAAAGTCCTTTGGTAGTCTTCAGACTGCACACAGTCAAGGCACCCAGTGCCAGAGGCAGCAAAACAACATCAAAACATCTTTGAACCTCCACTATATTTGACTGTAGGTagtgtgttctttttttgtagGTCTCATTTTGTTGTTGATATACATTAGAATAATATGCTTTACCAAAAagtaaagcgctgccactatgatcgggaggtcattggttcgaatccctggtcatgcagcttgccatcagtctGGCAATTCAGCAATgctgaatcagcagcagttcaataAGAGGTGGTGATTgccttcacatgtgtcggaggagacGTGTGCTGCTCTTCCCCTCCTGTTctcttcttctgtttctgttgTCCATGCTTAGTGTGTCACtaagacacagacacacaatgcAAATGCTTGAAGCAAAGTCATTTCCTCATAGTTTTCCTCAAAATTATTTTGTCTGgcccattttttaaattttgtgtgCAATTATGtcaaatttgctttttttttctctctgatttGTGTATTGTTCCAATACACTCAATAGAAATAAACATGTGTATTTCATTTTCTGGCAAAATTGCAGGGGTGCCAACACTTTCAGCCATTACTGTAACAGCCATGACTGTAACTCAGCTAATGTCAGGGTTGCACTACACAGAGTCATCAGGTCATTAAAACTTTAAAGCTATACAATTTGTGGATTTGCAAATGGATTTGAAAACTGGTGTGATGCAAAATATGATGTCTGTAAGAAATGAGCAATACAAATTATTTGTGTGCtgatgtgcagcaaaaacataaagaagaaaatatatGGATGAGAAAATCTGtgattttttacttaaattagcaGTTCACACATAGCCAATGTGCACCTCTAAAAACTCAAAATGACTCAAAAATTGAACCTAAAATTAGGTAGTGTGACCCTGACCTTTAAGCTTAAAGGGCATAAGCTTCTGtaaataatgcattattttaaataaataactagtTATGTATTCGTAACATTAATAGAACATTAGGATTGTACTAATTGTAAATAGTGCATCAGGATCGTACTTGTATCTGTGCATATTAAACCTACaaacatactgtactgtatttgtacAAAAATGAATGGTTATTTTTTTGGATTATAACTGATTGCTTTATTATGTCAACTGAAtaaatttttcagttttattgtatgATTAAAACTTTGCAGTGTCAAGACA

Function

GO: NA

KEGG:

id description
K08456 ADGRF3, GPR113; adhesion G-protein coupled receptor F3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606493.2 True 4808 mRNA 0.38 19 24684330 24698963

Neighbor

gene id symbol gene type direction distance location
LOC103026721 smc6,LOC108428709 coding downstream 14352 24654721 ~ 24669978 (-)
LOC103026113 LOC108428705 coding downstream 54775 24620659 ~ 24629555 (-)
LOC103045658 NA coding downstream 101479 24576207 ~ 24582851 (-)
LOC103024550 LOC108428701 coding downstream 109555 24560563 ~ 24574775 (-)
shprh shprh coding downstream 302725 24364845 ~ 24381605 (-)
LOC103028045 NA coding upstream 949 24699912 ~ 24712425 (-)
LOC103029498 LOC108428715,LOC108270176 coding upstream 16161 24715124 ~ 24726398 (-)
LOC103030890 si:dkey-36g24.3,LOC108428718,LOC108270043,LOC106607835 coding upstream 49091 24748054 ~ 24758220 (-)
LOC103031209 tatdn3,LOC108428722,LOC107733563 coding upstream 60419 24759382 ~ 24762749 (-)
LOC103033209 LOC105895699,LOC103033209,LOC102290137,LOC103363062,LOC105017734,LOC107377943,LOC108428727,LOC102203632,LOC101464058,LOC101076210,LOC106571413 coding upstream 95786 24794749 ~ 24797199 (-)
G83059 LOC103045657,LOC108428691 non-coding downstream 409240 24271440 ~ 24275090 (-)
G82971 ctbp2a,LOC103037620,LOC103387658 non-coding downstream 677504 23939918 ~ 24006826 (-)
G82935 NA non-coding downstream 973925 23642620 ~ 23710405 (-)
LOC111193220 NA non-coding downstream 1015438 23608681 ~ 23668892 (-)
G82929 NA non-coding downstream 1087512 23596212 ~ 23596818 (-)
G83254 dnajc5gb,LOC108428719,LOC108270045 non-coding upstream 37741 24736704 ~ 24740999 (-)
G83236 NA non-coding upstream 64933 24763896 ~ 24764321 (-)
G83259 fuca2 non-coding upstream 66972 24765935 ~ 24771043 (-)
G83260 NA non-coding upstream 72919 24771882 ~ 24772742 (-)
G83271 NA non-coding upstream 102364 24801327 ~ 24857856 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 48449 24630879 ~ 24635881 (-)
cunh6orf183 zbtb24 other downstream 67714 24588941 ~ 24616616 (-)
G82991 LOC108428614,LOC108269476,LOC107734364,LOC107693224,LOC107589682 other downstream 666674 24012634 ~ 24017656 (-)
kiaa0586 NA other downstream 809929 23713376 ~ 23874401 (-)
sptssa sptssa other downstream 1495241 23110883 ~ 23189089 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other upstream 335041 25034004 ~ 25041054 (-)
G83612 NA other upstream 1293536 25992499 ~ 26003685 (-)
cga cga other upstream 1735509 26434472 ~ 26470163 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other upstream 3131665 27830628 ~ 27848444 (-)
G84215 NA other upstream 3645626 28344589 ~ 28356545 (-)

Expression


Co-expression Network