LOC103045057 (LOC108428617)


Basic Information

Item Value
gene id LOC103045057
gene name LOC108428617
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24317310 ~ 24336229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606503.2
TGCTTTTTCCTCTTTCTGTAATCTCTCTTCAGGACATTCAGGCAGAAATTGACGCCTACAGTGATCCCTACAGAAGGGGGTCCAGGGATCAAGTACTGGGTGTCAAGTTAATAGGCATTGAGAATGGGGATATGGACTCAAATGGTCAGAGTACTGCCTTTACAAACAgGGAGCGTGTGGAGTTTCACAGGGAGAGATGGGCCGGACTGATAGTGCTTCTGGAGGAATTATGGTCCTGGCTGAAGATGATGGATGAGGAGCTGACCAGACAGCTTCCCATTGGAGAGGATGTTCGTACTCTTCTGCAGCAACAAGGATACTGTATGGCTCTGCAGAGTGAGTTAACCAGTCGGAGGCAGGTATTTGACCACACTCTGAAGCAGCTGTGCCTGTGCCTGGCTCTGCAGCCTGCAGATGGGCTGTGTGAAATCAGCAGGGAAACAGCAGCAGAACACGCTGTACCGGAGAGGGGTATGTGCCTGGACCGAGTCATGCAGGATCAGGCCCTGGAGGTCCAGCAGCACTGGGAACGGTTCCGTGCTCATGCAGACAGTTGGCAGCAGCAGGTCAGCTGGGCTTTGGAGAAGCTTCAGGACCTGCAGGACTCCATACATCAGGAGCAGTCTGGTTTGATGGAGATGAAGATCATTGGGCAAAGGTGGCACTCAGATGGGCACCCTCTGGTTAGCTGTGAACTGGACGGTATTGAGGAGACCACTAGCTTCAATGAAGGAACAGTAGAACTTCACCTGAGTGCGACAGATGTCAGTGTCAGTTTGGTTCCACCCCCTGACATCCAGCTTGCTCCAATCTCATCAGCATCACCTCTCAGCCCCGGTACACAAATGAAGATTTCAGAGGGGGCAGTGATGAATCATCACAGACAGCACCTCCTAGATGCTCAAGATGATAACAGACCACTCTCCCAGGACTTCTTATCTGcttctgtccagtctccatgGCAGAGAGCGGTCTTGCATAATGGCGTCCCTTACTACATTAATCACGAATGGCAGACTACATCATGGGATCATCCACAAATGACTCAGCTTTTTCAATCAATGGCTGATCTGGAACATGTGCGCTTCTCTGCTTACCGAACCGCTATGAAGAGCCGCAGAGTGCAGAAAGCCTTGTGTTTGGACCTTTTGGAGCTGGCCATGGCTCAGGGAGTCTTTGATCAACATCAGCTATCTCATAATGGACATCTTTTGGAGGTTCCAGGCATCATAAGATGTTTATTTACAATCTACACTGAGCTTCAGCAGGTGCATCCAGATATGATCAACATGCCCCTGTGTGTGGACTTGTGTCTCAACTGGCTTCTGAATGTCTATGACAGGGATAGAAGCGGAAAGGTTCAGGTCCTGAGCATGAAGATTGGCTTGCTTTCTCTTTCAAAAGGACACCTTGaggataaatataaatATCTGTTTAATCAGGTGGCTGGCTCTGCAGGAGTGTGTAACTCCAGGCAGCTAGCCCTGCTACTGCAGACCACCATACAAATCCCCCACCAGCTGGGTGAGGCTGCTGCTTTTGGAGGGAGCAACGTGGAACCCAGCGTCCGCAGCTGCTTTCAGCATGTTGGGAGTAAGGAGGCGATTGAGCTGGACCAGTTTGTAGAATGGATGCACCTGGAGCCCCAGTCGATGGTATGGTTACCAGTGCTACACAGAGTTGCTGCAGGAGAGACTGCCAAACACCAGGCCAAATGCAACATCTGTAAAGAAAGCCCTATGATTGGCTTTAGgTATCGCAGTCTGAAACATTTTAACTATGATGTGTGTCAGAGGTGTTTTTTCTCTGGAAGAACCAGCAAGGGTCACAAGCTAAACTATCCTATGGTGGAATACTGCACCCCGACAACCTCTGGGGAAGATGTGCGTGACTTCACCAAGGTGCTGAAAAACAAGTTTCGGTCAAAGAAGTACTTCACCAAACATCCTCGCCTTGGATATTTGCCAGTCCAGGCCATTCTAGAAAGTGATCTAGACTTCCCAGTCACACTCCTGAGCATGTGCCCAGAGCACTATGAGTCCATATGCGTGCAGCAGACCAGTTCCTAGGCAGTGGAAGCAGTGGACAAGAAGGAACAGGCACTATCCATCTGTCTGGCCTCTCTGGAGTAAGAAACAAGCAGCTAGCTGGTCACTGCCTCGAAATTACTCCCTGACTGCAGCTCTCTCCTACTTTTTTTCTGCTGGCAAGAAAAACCATATACCCAATTGTGGACAGAAGGctataatttactgtaaataaaactgtacatCTGTTGACTGCGAAACCA
>XM_022672986.1
TGCTTTTTCCTCTTTCTGTAATCTCTCTTCAGGACATTCAGGCAGAAATTGACGCCTACAGTGATCCCTACAGAAGGGGGTCCAGGGATCAAGTACTGGGTGTCAAGTTAATAGGCATTGAGAATGGGGATATGGACTCAAATGGTCAGAGTACTGCCTTTACAAACAgGGAGCGTGTGGAGTTTCACAGGGAGAGATGGGCCGGACTGATAGTGCTTCTGGAGGAATTATGGTCCTGGCTGAAGATGATGGATGAGGAGCTGACCAGACAGCTTCCCATTGGAGAGGATGTTCGTACTCTTCTGCAGCAACAAGGATACTGTATGGCTCTGCAGAGTGAGTTAACCAGTCGGAGGCAGGTATTTGACCACACTCTGAAGCAGCTGTGCCTGTGCCTGGCTCTGCAGCCTGCAGATGGGCTGTGTGAAATCAGCAGGGAAACAGCAGCAGAACACGCTGTACCGGAGAGGGGTATGTGCCTGGACCGAGTCATGCAGGATCAGGCCCTGGAGGTCCAGCAGCACTGGGAACGGTTCCGTGCTCATGCAGACAGTTGGCAGCAGCAGGTCAGCTGGGCTTTGGAGAAGCTTCAGGACCTGCAGGACTCCATACATCAGGAGCAGTCTGGTTTGATGGAGATGAAGATCATTGGGCAAAGGTGGCACTCAGATGGGCACCCTCTGGTTAGCTGTGAACTGGACGGTATTGAGGAGACCACTAGCTTCAATGAAGGAACAGTAGAACTTCACCTGAGTGCGACAGATGTCAGTGTCAGTTTGGTTCCACCCCCTGACATCCAGCTTGCTCCAATCTCATCAGCATCACCTCTCAGCCCCGGTACACAAATGAAGATTTCAGAGGGGGCAGTGATGAATCATCACAGACAGCACCTCCTAGATGCTCAAGATGATAACAGACCACTCTCCCAGGACTTCTTATCTGcttctgtccagtctccatgGCAGAGAGCGGTCTTGCATAATGGCGTCCCTTACTACATTAATCACGAATGGCAGACTACATCATGGGATCATCCACAAATGACTCAGCTTTTTCAATCAATGGCTGATCTGGAACATGTGCGCTTCTCTGCTTACCGAACCGCTATGAAGAGCCGCAGAGTGCAGAAAGCCTTGTGTTTGGACCTTTTGGAGCTGGCCATGGCTCAGGGAGTCTTTGATCAACATCAGCTATCTCATAATGGACATCTTTTGGAGGTTCCAGGCATCATAAGATGTTTATTTACAATCTACACTGAGCTTCAGCAGGTGCATCCAGATATGATCAACATGCCCCTGTGTGTGGACTTGTGTCTCAACTGGCTTCTGAATGTCTATGACAGGGATAGAAGCGGAAAGGTTCAGGTCCTGAGCATGAAGATTGGCTTGCTTTCTCTTTCAAAAGGACACCTTGaggataaatataaatATCTGTTTAATCAGGTGGCTGGCTCTGCAGGAGTGTGTAACTCCAGGCAGCTAGCCCTGCTACTGCAGACCACCATACAAATCCCCCACCAGCTGGGTGAGGCTGCTGCTTTTGGAGGGAGCAACGTGGAACCCAGCGTCCGCAGCTGCTTTCAGCATGTTGGGAGTAAGGAGGCGATTGAGCTGGACCAGTTTGTAGAATGGATGCACCTGGAGCCCCAGTCGATGGTATGGTTACCAGTGCTACACAGAGTTGCTGCAGGAGAGACTGCCAAACACCAGGCCAAATGCAACATCTGTAAAGAAAGCCCTATGATTGGCTTTAGgTATCGCAGTCTGAAACATTTTAACTATGATGTGTGTCAGAGGTGTTTTTTCTCTGGAAGAACCAGCAAGGGTCACAAGCTAAACTATCCTATGGTGGAATACTGCACCCCGACAACCTCTGGGGAAGATGTGCGTGACTTCACCAAGGTGCTGAAAAACAAGTTTCGGTCAAAGAAGTACTTCACCAAACATCCTCGCCTTGGATATTTGCCAGTCCAGGCCATTCTAGAAAGTGATCTAGACTTGTCCATATGCGTGCAGCAGACCAGTTCCTAGGCAGTGGAAGCAGTGGACAAGAAGGAACAGGCACTATCCATCTGTCTGGCCTCTCTGGAGTAAGAAACAAGCAGCTAGCTGGTCACTGCCTCGAAATTACTCCCTGACTGCAGCTCTCTCCTACTTTTTTTCTGCTGGCAAGAAAAACCATATACCCAATTGTGGACAGAAGGctataatttactgtaaataaaactgtacatCTGTTGACTGCGAAACCA

Function

NR:

description
PREDICTED: utrophin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606503.2 True 2290 mRNA 0.49 17 24317310 24336229
XM_022672986.1 False 2251 mRNA 0.49 16 24317310 24336229

Neighbor

gene id symbol gene type direction distance location
trnal-uaa_4 NA coding upstream 6815 24310413 ~ 24310495 (+)
trnal-uaa_3 NA coding upstream 8420 24308808 ~ 24308890 (+)
trnal-uaa_2 NA coding upstream 9877 24307351 ~ 24307433 (+)
trnal-uaa_1 NA coding upstream 10617 24306611 ~ 24306693 (+)
stx11 stx11 coding upstream 14544 24299171 ~ 24302766 (+)
LOC103047809 grm1,LOC108428695,LOC107733655,LOC107692633 coding downstream 47649 24383878 ~ 24403591 (+)
LOC111193225 NA coding downstream 67461 24403690 ~ 24407033 (+)
LOC103021971 stxbp5,LOC108428698 coding downstream 81780 24418009 ~ 24458899 (+)
LOC103022677 LOC108428699 coding downstream 124345 24460574 ~ 24551484 (+)
LOC103024245 LOC108428599,LOC107594136,LOC107693148,LOC107552018 coding downstream 215713 24551942 ~ 24560699 (+)
G83064 NA non-coding upstream 2345 24314715 ~ 24314965 (+)
G82838 NA non-coding upstream 178406 24136576 ~ 24138904 (+)
G82816 NA non-coding upstream 401851 23913129 ~ 23915459 (+)
G82814 NA non-coding upstream 408702 23908338 ~ 23908608 (+)
G82813 NA non-coding upstream 411915 23904860 ~ 23905395 (+)
G83071 NA non-coding downstream 13212 24349441 ~ 24350535 (+)
LOC111193226 NA non-coding downstream 20746 24356975 ~ 24367973 (+)
LOC111193227 NA non-coding downstream 236099 24572328 ~ 24576551 (+)
G83116 NA non-coding downstream 283466 24619695 ~ 24619937 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding downstream 294644 24630873 ~ 24635198 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 175078 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 343335 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 439540 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1085992 23230430 ~ 23231318 (+)
G82488 NA other upstream 1959175 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 559665 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 597935 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 693768 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 824689 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1583328 25919557 ~ 25975283 (+)

Expression


Co-expression Network