LOC103039108


Basic Information

Item Value
gene id LOC103039108
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24998335 ~ 25008777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606535.2
gaaaaaaaacaacaacaaaaaaaacaaaagactgCTTCCTCAAGCTAGTGGGAGCTTTCACAAACCAGTTTTGCAAGTCTGACCACGCTGTATCTAGACATCCCAGTCAGGTTTGTCATCATTTTATAATTGCTGGCATGGTGATCTCAGGTACCTGTTGTGGAAAATGGGCAACTGTGGCTGCTCTTGCTGTAAATGTTGCTGTTGGCTGTGCTGTAAAGAAGAACCAAAGCAACACAAGCCTATACGAGTGACTTCCCTCTACGATTACCGCTGCCGTACCCTGAGAGACCTGAAGCTCAACAAAGGAGATATACTTGAAGTGATTGAAGAAAACCAGCACTGGCTTTATGTAAGGAAATGCTCAGTGAAGAATCAGGAAGGCTACGTACCCAAAGTCTTGGTGAAACCTGTGGACAGTTTGGAGGCAAAGGTATGGTATTTTGAAAACGTCACAAAACGCATTGAGGCCAAGAGATGTCTTCTGAGACCAGAAAACAACGAGGGAGCATATCTTGTGTGGAGAAGTGCAGAGAATCATTTTTTCTACCTGTCAGtaAAGGATGGGCCATATGTAAGGCACTACAGGATTAAAGAGGGAGAAGCTGGTAAGCTGTTTTTCCTTGTCAGTCAGAAAACATTCCCGACTGTGAGTGACTTAGTGGAACACTATTCCAAGAATCAGGATGGGCTCTGTACACAGCTTAACGCTCCTTGTGTTATGCTGGATCGACCATCCCTTCCCACCCTATCATATGATGCAGAGTGGGAAGTGGACAGAAGCTCTCTGGCCAAAGTGGAGAAGCTTGGCAGCGGGGAATTTGCTGAAGTGTGGCATGGAGTGTGGAACAAAAACATAGATGTAGCCATTAAAGAATTTCGAGTCATTAGCCCTGAGATccagacagagataaagatcaTGAAAGAGTATAAACATGAACGGCTGCTGAAGCTGTACGGAGTGTGCACAGTCAGCGAGCCCTTCTGTCTCATCACAGAGCTCATGAAAAATGGGAGTTTGAAGAAATACCTCATCAGCCACAGGGAGAGGAAAGATATTGCATTTTCCCTCATGATTGATTTTGCAGTGCAGGTGACAGAAGGGATGGCATACCTGGAGAGCAAGAACATAGTTCACCGAGACCTGAGAGCTGATAACATCCTACTGACTGACATGCAGTTTTGCAAGATAGCAGATTTTGGACTCGCTGACTTTACTTTGCCAGGAGACCGGGAAAGTACATTTGCTGTAAAAGTTCCTATAAAATGGATGGCACCAGAAATTTTTGACAACCAGGTGTACACCAGCAAGTGTGATGTCTGGTCTTTCGGGATCCTCCTGACTGAAATTGTCACCTACGGAAATGACCCATACCCAGATAAAGACAAATTAGCCTGCATTCAAGCCATTAGGAGAGGATACAGGATGGAGCAGCCACAAGCCTGTCCTTCATCACTGTACGAGATCATGAAGCTCTGCTGGAGAACCGACCCTGATGAGAGACCTGGGTTTACAGTGCTTCAGGAGAAGTTAATGGGTCTTGTTTCAGAACCCATCTCTGAACTGGAGTAGGACTTTGCCGTTGTGGAGATAAGCTGAGATATTTTAGACTCTTATCTACGAAACCAAGTGAATGAAGAAGCCAACTGACTGTATTTCCTTAATACGCAGAATTGCAACCATCAAAAAATCTAATTCAGATGCAGTGTATTCATCAAAACAAATGAAGGAACAACTTGTTCTGGAAAGGCCATCATACAGCTGTATTGGTGTCAACAAGGGAGCCTAATGCAGATTTACTGGAATCGCTACTCCAGCCTGAGAACTGAAAGACTTTTACTTGGACTGTGGCTGTGCTCTCATTTAAAATGCATACGAATGCTCACTAATTTTACTGGGTGATTATTCTAAAGTGAACAAAGAGCTGTTACTGATCTGGTTAAACAATTTGTAACCAGCAGCTGTACAAAAGCAAGTCAAAAActatgcttgaattttttttcacTGCTCTTGGAAAATCACAGTGTGTAACACAGATAACACAGAATGTTACAAGAATGTTTAGCAGTGTTTTGTTCCAAAAAGTttagcctgtaacattacagaaataatatttACCCCTATAACAAGAAGAGCCAGGTAGTATACATaacagagataaaagagagGTGGTGACATGTTGTGAAAACTTGTCATGGATATATGAACAAGATAAATTAGGAGGAGGGTCTTCTGACATGTTTCTTCTttcataatgttattattttatacctCCACTAATGCAGAGCTCAGGCTGCAGGTCTGGAGTTGGGAAACGCAGctttacacagttaaataatacCTGTCCCAGATTGAGACCAATGCGAGTCAGCTTTAATCCTTTCTCCCAGCTAAAGATACTCCTTACAGAGGCAATGGGATTAGCATGACGCAAGTACTATTTCAGTTACTGGCCGCAAAGGAACTGTGCCATGCGTCTGTTCTTGTctacacacaccaaaacatactatatatatatatataatatatatatatatatatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606535.2 True 2544 mRNA 0.42 9 24998335 25008777

Neighbor

gene id symbol gene type direction distance location
gckr gckr coding upstream 461 24981376 ~ 24997874 (+)
ptk2b LOC108428731,LOC108270138 coding upstream 115583 24849576 ~ 24882752 (+)
trnal-cag_10 NA coding upstream 170579 24827674 ~ 24827756 (+)
LOC103046279 NA coding upstream 172235 24814910 ~ 24826100 (+)
LOC103033951 LOC108428726 coding upstream 184526 24807926 ~ 24813809 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding downstream 36936 25045713 ~ 25071105 (+)
enpp4 enpp4 coding downstream 78826 25087603 ~ 25095143 (+)
clic5 clic5,LOC105909474,LOC103355727 coding downstream 89262 25098039 ~ 25109750 (+)
mcm8 mcm8,LOC107594086,LOC107678783 coding downstream 658922 25667699 ~ 25683838 (+)
crls1 crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593 coding downstream 676028 25684805 ~ 25690894 (+)
G83307 NA non-coding upstream 65796 24931919 ~ 24932539 (+)
G83295 NA non-coding upstream 104696 24893243 ~ 24893639 (+)
G83180 NA non-coding upstream 158207 24838530 ~ 24840128 (+)
G83167 NA non-coding upstream 225542 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 355680 24642392 ~ 24642655 (+)
G83354 NA non-coding downstream 119183 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 352950 25361727 ~ 25367281 (+)
G83440 cdc5l,LOC106599718 non-coding downstream 361474 25370251 ~ 25387590 (+)
G83441 NA non-coding downstream 369794 25378571 ~ 25379291 (+)
G83446 NA non-coding downstream 455123 25463900 ~ 25464253 (+)
LOC111193228 NA other upstream 62149 24934164 ~ 24936186 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other upstream 73520 24895894 ~ 24924815 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 856103 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 1024360 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 1120565 23875439 ~ 23877770 (+)
c9h8orf74 NA other downstream 21220 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 152141 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 910780 25919557 ~ 25975283 (+)
G83602 NA other downstream 1226721 26235498 ~ 26253602 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other downstream 1266224 26275001 ~ 26305383 (+)

Expression


Co-expression Network