fuca2 (fuca2)


Basic Information

Item Value
gene id fuca2
gene name fuca2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24765981 ~ 24771053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606544.2
GTTTTGGCAACCTATCAGGTACAGTTTGGTTAAGGAGGAAGTTCAGCAttgttggtttttttttggatagtCACATGAGCTAGTTTCAGGTGATATATCGTGTGATCTGCACAGGGTTTAACCACTGGAGAGCTTTCCTCACTCTAGAGCGGGCGAGTGCAGAAACATGGGGGCTGGAAACCTGTGTGTTCTCTCCCTGTTTCTGTTGATGGGAAGCTGCCTCTGTCAGTATCAACCTAACTGGGACTCCATAGATTCCAGACCTGTGCCTGAATGGTTTGATCAGGCCAAGCTTGGGATCTTTATACACTGGGGTGTGTTTTCTGTCCCCAGCTACGGAAGCGAGTGGTTCTGGTGGTATTGGCAAGGCCGGAAAATACCTGACTATGTGTcatttatgacaaaaaacttTGCCCCTGGATTCCAGTATCAAGACTTTGCACCAAAGTTTACCGCTGAGTTCTTTGATCCGAAGCAGTGGATGGACATCTTTTCAGCATCAGGAGCAAAGTATATCGTCCTCACATCTAAACATCATGAAGGTTACACCCTTTGGGGCTCAAAGTACTCATGGAACTGGAATGCAGTGGATGTTGGACCAAAGCGAGATCTGGTGGATGAGATAGCTACCGCCCTGCGGAAGAACACTGACTTACGCCTTGGGCTCTACCACTCTCAGTTTGAGTGGTTTCACCCTCTTTTCAGAGCAGATGCTGCCAATAATTTCAAAACCAATGTTTTCGCAACTGAGAAGTCCCTGCCTGAGCTTtatgaactaataaataaatacaaacctGAACTACTGTGGtctgatggagatggagatgccCCTGACCAATACTGGAACAGTACTGGGTTCCTAGCATGGCTGTACAATGAGAGCCCTGTTCGTGAGACAATTGTAACTAATGATCGGTGGGGAAAGGGTAGTATTTGTACACACGGTGGATATTACACCTGCACTGATCGGTACAGCCCTGGACATCTGCTGAAGCACAAGTGGGAGAGCTGCATGTCCATTGACAAGCGTTCTTGGGGCTTTAGAAGAGAAGCTGCACTCAGTGACTACCTTACTATTGAGGAGCTGCTTAAGAGCTTTATAGAGACCGTGTCATGTGGGGGGAACCTGCTGATGAATGTGGGTCCAACACACGATGGTCGCATCGTTCCTGTATTTGAGGAGAGACTTCGACAGATGGGACAGTGGCTGAAGGTCAATGGAGAAGGAATCTACAATACCACTGCATGGAGAGTTCAGAATGATAGCGTCACACCTGgagtctgGTATACATCGAAGCCACAGGATAAGGCAGTCTATGCGTTCTTGCTTTCATGGCCAGATAAAGGATCTGTTGTTCTGGCCGATCCTATTGTGTCAGCTAGTACACAGGTGGTGTTGGTGGGCAATAAACCATTGAAGTTTGACGTGCTAAAACCCACTGGTCTGCAGGTTTACCTGCCCACTCTGACCCCTAATGAGATGCCTTGCTCCTGGGCCTGGACCCTACGACTGACTGGTATAGCTTAGTCACATAGTTTAGGACGCTTTTTAACAGTTAAATTCCCAGgagatcattttttttagattaatcgTGTGGTAATAAGGGTAcatataaatctttttttttattctgtgagtatatgaaatctgtttttgatttgttttatttttgcacaaagATTTTATGATAATCTTGAAGGTTTCTTTCTActtacattgtattttataaaatgctGTAGGTTTCAGTTTGTCAGAGTTTATGCAGGGAgctaattaatgattttatatTGGCCATTCTATTtgcactgtttttctttttttgggatGATGTAAAGGGAAATGTAGCTTCATTTTAAATGAGATGTGTATCTAACAGAGTAAATGTGacttatgttttttaaaaaggaaaattcTGAATACTTGAAAAttgcctttttttaaagcattgcaCTTAATTTACACCAAATAAAATGGGAAACGTTctttaaa

Function

symbol description
fuca2 Predicted to enable alpha-L-fucosidase activity. Predicted to be involved in fucose metabolic process and glycoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in lysosome. Is expressed in gut; periderm; sensory system; vein; and yolk syncytial layer. Orthologous to human FUCA2 (alpha-L-fucosidase 2).

NR:

description
plasma alpha-L-fucosidase

GO:

id name namespace
GO:0006004 fucose metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004560 alpha-L-fucosidase activity molecular_function
GO:0042806 fucose binding molecular_function

KEGG:

id description
K01206 FUCA; alpha-L-fucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606544.2 True 1990 mRNA 0.43 7 24765981 24771053

Neighbor

gene id symbol gene type direction distance location
LOC103045971 NA coding upstream 18176 24742969 ~ 24747805 (+)
LOC103030357 LOC108270045 coding upstream 23184 24737013 ~ 24742797 (+)
tp53i3 tp53i3 coding upstream 29604 24732177 ~ 24736377 (+)
LOC103029186 cenpo,LOC103029186 coding upstream 35963 24726218 ~ 24730018 (+)
ankrd66 ankrd66 coding upstream 80121 24682186 ~ 24685860 (+)
LOC103032669 NA coding downstream 1753 24772806 ~ 24793331 (+)
LOC103034484 LOC107576683 coding downstream 27979 24799032 ~ 24805385 (+)
LOC103033951 LOC108428726 coding downstream 36873 24807926 ~ 24813809 (+)
LOC103046279 NA coding downstream 43857 24814910 ~ 24826100 (+)
trnal-cag_10 NA coding downstream 56621 24827674 ~ 24827756 (+)
G83123 NA non-coding upstream 123326 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 129099 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 130783 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 146044 24619695 ~ 24619937 (+)
LOC111193227 NA non-coding upstream 189430 24572328 ~ 24576551 (+)
G83167 NA non-coding downstream 829 24771882 ~ 24772793 (+)
G83180 NA non-coding downstream 67477 24838530 ~ 24840128 (+)
G83295 NA non-coding downstream 122190 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 160866 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 356907 25127960 ~ 25187909 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 623749 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 792006 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 888211 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1534663 23230430 ~ 23231318 (+)
G82488 NA other upstream 2407846 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 124841 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 163111 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 258944 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 389865 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1148504 25919557 ~ 25975283 (+)

Expression


Co-expression Network