LOC103041179


Basic Information

Item Value
gene id LOC103041179
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22111114 ~ 22128141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607013.2
GAAGCAGGGGAAAGCTCATGGGACCCAGTAAGCAGATCGGGAGATGCTTCTCTTCTTGGCCCGTGGGATGCTGGTGGAAGGTGCTTTTACCGTGTGAGAAGTACCAGGTGAAGGCTGAGTTTGCCATTAGCAGCACTGCAGTTGCTCAGACGGGGGAACTGACTTTCTACCTCAAGCAGAAACCACCGGAACTCCAGCCCACAGGTTCTCTGAATTATCTCCCCTCTCATCTCCTCCTTATGAGATGTTCCAAACTAGCAAAAGGATGCTCAACACTGAAGCCCTGTGGAACAATTCTTTAACAGACAACAACGTGAAGGACATCTTCTGCTGGCTTCGATGCATCATCACTGAAGATAAAGACAATGCGAAGAATAGTCTGGCCAATTTTAACTGCTGGCTTCAGTGCTCATTGGAAATGACCAAGAAAGAGTTGCTAACTCTCTGTTTTGTCCAGCGCAAGGGCCTCTGGATGTGTCTGGACCAGAGAGCCTTCACTAAAGTTCATTTACTGACACAGAAACTGGAGAACCTGCTGTCATTGAGCTGCTTGGGAAagaaactcactgatcctcatCTATCTACACACAGGCTCACAAATGGGACGTATTTAATTGATGGTCACATGATCAGCTGGGGCTGCTCAAATCAGGAGCAACAAATACTCAGACAGCACATCTTGCTCGGCAGACTGGTACAGTGGTGGAGTTTAACTGGACTTCTGCCACAGTACCCAGATGCTTGTGAGTTCAAGCAGATTTCTCAGATGTGGCGTAAGATGGACCAGAATCACAGAAGAGTTTGCTTGAAGCTGCGATGTGATATTGAAGATAAATACAGATCGAGCTCCCTTATCCAGGACATAATGGCTCGTTTGGTTAAACAGCATGGGCCACTATGGGTTTCAGAAGACTGTGCCTACCAGACTTACCCTCCACCCTCTCTTAACGCTCTCCTAAATCTTGTGCTGGTCCCACATGTAGACATCACATGTGTCCAGGCCATTATAATGTACTTTGTCTTGGATGTGTCTAACTACCTGCGCTGTAATGATGACCTTCTGAAATCATTCTGCCGCACCTTCAGCATCCCACCCAGCTTTTCCCAACAGATCCGTGGATTCTGGCTCATGGACCATGGCTTTGTGTCTgaTTCAATGGAAATGCTGCTAAGCCCAAAGGCCAGTTCACCCTGGTTATCACTTCACCATTGGGCTGTTCTGAGGACCCTGCTGAAGCGAGGGGAGCGTCAGGCAGCACTGAAGTACCTGTACTACACCACACCTGCCATAGAGAGCGTTCAGAATGCCAGACTGTATATGGACGTCCTGCTACAGAACAAtcgTGTTTCTGAGGCCTGGATGCTGCTCAGACATGGTCAATTAGGAAACAAGCACCTACTCAAACACTTCATTCATGAATGTGAGAATGTTTGTGTCTGTGGGGaagcactgaccgctgtgtgtaaGAAGTTACAGCCCCACTTACCTGAAAGACCAGATTCAGTGAGACCTGAGGCCACGAATCAAGATAacattaaacatgaattaaacaGTCCAGAGGGAAAAGacCAGACCTCTCGTCCACTATCTGCACTGTTATACAAGTGTCTCAGCAACAGCTCTCTGACGCCTGAAGATTTGATTACACATCTTAGACAAACTGTGACTGACCTTAACTCACTACAAACCACAGAAAGGGTTTTGGTAGTGTGGCCAGAGCATCTGGAGATCACAGAGGAGAACAGGAATATACATCCAACACATCCTGCGTGCCATAATCTGCCcgacacacctgatccagcaGAGCTTCAGAAGGCTCCTCAGAGAAGcccagagctggagcagctaGAGGATGAATTGCCTGCATTGTTACAGttggtATGTGTGTCTCCGTCAGTGGAATCTTCTGGTACTACATCTCCAGACAGTATAACGTCCGCATGCTCCTTCACAACTGCCCCATCTTCACCGCTTGTTGTCCCATCTGAAACCCCATCTGCCAtctacagcagcacagagacaGTGCAGAGCCCCTTTTCTACATGTACACAAGAGGACTGCCAGGTGCTGGACAATGAACTGAGAGCTCCTGAAAACCTGGCTCAGATCTGTTGCCCAGACCTTACTTTGACTGTGGATGGTTCTACAGAAGCAATGCCTTTTAAAAGCCTGCGGAGAGGAAGTGCAATTGAACTGGACATCTATGAGTGTGTTGTGGAAATCTCCACGTCTGCAGTTCCAGAAAACATCTCAGACCCAACTGACAGTCCAATAGTAGAAACTGCACAAACTAAGAAACGgtCAAAGAGCAAGTTTAACCTTCCGTCACAGTGCTACAGCAATGAGGATAATCAAGCAGTGCATTCTCCTGCTGAGCTTCCTGTAGACAGTCACAATTTTTTAACCCCTGATTATGaaaaaGCAGTCTATGATAAAGTCGTATCTGAGGACATCATTAAGGCAGAAAATGTGACTGAATCTTTAACCTCTGAACAGAAAGCTGAAAGTTTTTATCCTCAGGAATCTTTCTCCATTGAAACGCCTGAAACAAGCAGCTTTCTGGAACTTGAGCCTTTAAGGAGAGCACTGTCTCTTCCTCTAGCTGAGGAAGGCTTTGAGGTCTTCCGTTCGGATTCCCAGGATTCGGTGGATCAGCCAGAGATCCTTACCTCCTGTGCCCCTTCTGAGACCATGCAGGACCTCGAaaagaaatatgttttaaaaaagagagGAGATCCATGCCAGTCTGCTTCATTAGCCTCTTTAAGGAGCGCTGTCATAGAGACAGACTTCTTCACCCATCAGCTGCACATTCCTCTTGGAGTCTCCGTGTCACCCTGCACCAGTCCAACCCGCAGCCCCCAGCTCAGCCCCTCTGATCAGGTTAGAGACAAATCCCCCAGCCAAGGCAAGACTACAACAGCGAAGGTGGCGATGTGTTTCCGGACTACACCCGACGGGATAGGCCACTGTAGAGTGGGCAGCTGGTGGAAGCAGGGCCTGGAGACAAGACGAGCCTCCACAGGCCTGCTGCATGCAGTGGAACAGGTCTCAGCTGCCACAAAAGGACAATCTCAGTCTCGAGGATCACCTGGCTTATTGGAATCCTCTGCCAAGCCTAAAGGAGGCAAAAAAGAGGTCAGACGGggTGGGAAAGAGGAGTCGACTAGTAGAAGGGGACCCCGAAAAGTGGCCTCTCATCCAGTGGAATCCGGATCATCTGCACATGCAGAACGAAGAGACAAGAGAGGAAAACGCTTTAAACAGTCATGAGAAAAAGATTTTACTTCAAATATCAGTTATGACATGTAATCATATTTTTAATGATGGTGTCTAAATGCACAGTTCACACAGGTATTAGCAAATCTGATCACAATGTGGGACATTCAACTATTATATATAAAGCATTTTTCCTGTAGGTCTTTTAGTGAGCATATACAGTCAATGCAAGTAAGGAGAACTGCCATTTTTGCTTTGTTCTGACACTAGAGTGCACTCTAGAGCAGGTCTATGAGAAATAGTTAAAATGGAGATCTATTTTTTCCAACACAGAAAaatatttcagctgtttttcacaGTCCTGTTATATTGTAATGCTGCTAACTCACCACCCAATTAGAAGCTAATAGCCAGAATGtagatatacatttatttaatatattcttCTACTTTCCTAATTTTAAGGTgccatagaataaaaaaatattaatttggtCACTGATGATAGTTCAGTACATGCAAGAGAAATTTGTTAACCCCAAACACTGTTGCGTCCTCAAAAGAAAATCCACTGAAGTAAAACAGGACTATAAAACAGGCCAATTCCGAAACATTCCAAAAAAGTATGATTTGactcattttatatttatatgcctTCAAAAGCCTTCCTGggttaaatgcaacagctactATGGGAGAATATTGATAAAAGTCTAAAATGCTAGAGACCAGAGAAAAGCTGAGTGGAGGAAGAATTCCTGTGGGTATCCAATCTTATGACAGGCAGGGAAGAGCTGCAAGGATTGTGTTTTATAGAAAAGCTTTGAATCATTAGGTGCTTGCTGGGTTCTTGTTTAAAAGCTAACCCTACCACTTAAATAAATAACCCAAAAGCTGGTTTTAAACTACTTACACAAATAATGTCAAAAGTAGAAACTAGTAGTAGTGGCTCAATCAAGCATGTAGAAAAATAATGTCCTTCTCTTATactataaaactgaaaaaaattaaatattttgcatAAATTGTCAGATATTCCAAAAATAAACATACTATTGAATTTGTGTTATATTGTTTTTTCCAGATATCAACAATGAATTTTCATACAGTACTGCTGTTTTAAAGTCATTGGTGGTTTTAGAAGGTGATTGTAATTGTATACCGCGCCTTAAGAGGTGTAATTACAAACTGGAACTACTATATGGTTGTTGACATATATAAAGCCCGATATACTGTACacta
>XM_015607014.2
GAAGCAGGGGAAAGCTCATGGGACCCAGTAAGCAGATCGGGAGATGCTTCTCTTCTTGGCCCGTGGGATGCTGGTGGAAGGTGCTTTTACCGTGTGAGAAGTACCAGGTGAAGGCTGAGTTTGCCATTAGCAGCACTGCAGTTGCTCAGACGGGGGAACTGACTTTCTACCTCAAGCAGAAACCACCGGAACTCCAGCCCACAGGTTCTCTGAATTATCTCCCCTCTCATCTCCTCCTTATGAGATGTTCCAAACTAGCAAAAGGATGCTCAACACTGAAGCCCTGTGGAACAATTCTTTAACAGACAACAACGTGAAGGACATCTTCTGCTGGCTTCGATGCATCATCACTGAAGATAAAGACAATGCGAAGAATAGTCTGGCCAATTTTAACTGCTGGCTTCAGTGCTCATTGGAAATGACCAAGAAAGAGTTGCTAACTCTCTGGCTCACAAATGGGACGTATTTAATTGATGGTCACATGATCAGCTGGGGCTGCTCAAATCAGGAGCAACAAATACTCAGACAGCACATCTTGCTCGGCAGACTGGTACAGTGGTGGAGTTTAACTGGACTTCTGCCACAGTACCCAGATGCTTGTGAGTTCAAGCAGATTTCTCAGATGTGGCGTAAGATGGACCAGAATCACAGAAGAGTTTGCTTGAAGCTGCGATGTGATATTGAAGATAAATACAGATCGAGCTCCCTTATCCAGGACATAATGGCTCGTTTGGTTAAACAGCATGGGCCACTATGGGTTTCAGAAGACTGTGCCTACCAGACTTACCCTCCACCCTCTCTTAACGCTCTCCTAAATCTTGTGCTGGTCCCACATGTAGACATCACATGTGTCCAGGCCATTATAATGTACTTTGTCTTGGATGTGTCTAACTACCTGCGCTGTAATGATGACCTTCTGAAATCATTCTGCCGCACCTTCAGCATCCCACCCAGCTTTTCCCAACAGATCCGTGGATTCTGGCTCATGGACCATGGCTTTGTGTCTgaTTCAATGGAAATGCTGCTAAGCCCAAAGGCCAGTTCACCCTGGTTATCACTTCACCATTGGGCTGTTCTGAGGACCCTGCTGAAGCGAGGGGAGCGTCAGGCAGCACTGAAGTACCTGTACTACACCACACCTGCCATAGAGAGCGTTCAGAATGCCAGACTGTATATGGACGTCCTGCTACAGAACAAtcgTGTTTCTGAGGCCTGGATGCTGCTCAGACATGGTCAATTAGGAAACAAGCACCTACTCAAACACTTCATTCATGAATGTGAGAATGTTTGTGTCTGTGGGGaagcactgaccgctgtgtgtaaGAAGTTACAGCCCCACTTACCTGAAAGACCAGATTCAGTGAGACCTGAGGCCACGAATCAAGATAacattaaacatgaattaaacaGTCCAGAGGGAAAAGacCAGACCTCTCGTCCACTATCTGCACTGTTATACAAGTGTCTCAGCAACAGCTCTCTGACGCCTGAAGATTTGATTACACATCTTAGACAAACTGTGACTGACCTTAACTCACTACAAACCACAGAAAGGGTTTTGGTAGTGTGGCCAGAGCATCTGGAGATCACAGAGGAGAACAGGAATATACATCCAACACATCCTGCGTGCCATAATCTGCCcgacacacctgatccagcaGAGCTTCAGAAGGCTCCTCAGAGAAGcccagagctggagcagctaGAGGATGAATTGCCTGCATTGTTACAGttggtATGTGTGTCTCCGTCAGTGGAATCTTCTGGTACTACATCTCCAGACAGTATAACGTCCGCATGCTCCTTCACAACTGCCCCATCTTCACCGCTTGTTGTCCCATCTGAAACCCCATCTGCCAtctacagcagcacagagacaGTGCAGAGCCCCTTTTCTACATGTACACAAGAGGACTGCCAGGTGCTGGACAATGAACTGAGAGCTCCTGAAAACCTGGCTCAGATCTGTTGCCCAGACCTTACTTTGACTGTGGATGGTTCTACAGAAGCAATGCCTTTTAAAAGCCTGCGGAGAGGAAGTGCAATTGAACTGGACATCTATGAGTGTGTTGTGGAAATCTCCACGTCTGCAGTTCCAGAAAACATCTCAGACCCAACTGACAGTCCAATAGTAGAAACTGCACAAACTAAGAAACGgtCAAAGAGCAAGTTTAACCTTCCGTCACAGTGCTACAGCAATGAGGATAATCAAGCAGTGCATTCTCCTGCTGAGCTTCCTGTAGACAGTCACAATTTTTTAACCCCTGATTATGaaaaaGCAGTCTATGATAAAGTCGTATCTGAGGACATCATTAAGGCAGAAAATGTGACTGAATCTTTAACCTCTGAACAGAAAGCTGAAAGTTTTTATCCTCAGGAATCTTTCTCCATTGAAACGCCTGAAACAAGCAGCTTTCTGGAACTTGAGCCTTTAAGGAGAGCACTGTCTCTTCCTCTAGCTGAGGAAGGCTTTGAGGTCTTCCGTTCGGATTCCCAGGATTCGGTGGATCAGCCAGAGATCCTTACCTCCTGTGCCCCTTCTGAGACCATGCAGGACCTCGAaaagaaatatgttttaaaaaagagagGAGATCCATGCCAGTCTGCTTCATTAGCCTCTTTAAGGAGCGCTGTCATAGAGACAGACTTCTTCACCCATCAGCTGCACATTCCTCTTGGAGTCTCCGTGTCACCCTGCACCAGTCCAACCCGCAGCCCCCAGCTCAGCCCCTCTGATCAGGTTAGAGACAAATCCCCCAGCCAAGGCAAGACTACAACAGCGAAGGTGGCGATGTGTTTCCGGACTACACCCGACGGGATAGGCCACTGTAGAGTGGGCAGCTGGTGGAAGCAGGGCCTGGAGACAAGACGAGCCTCCACAGGCCTGCTGCATGCAGTGGAACAGGTCTCAGCTGCCACAAAAGGACAATCTCAGTCTCGAGGATCACCTGGCTTATTGGAATCCTCTGCCAAGCCTAAAGGAGGCAAAAAAGAGGTCAGACGGggTGGGAAAGAGGAGTCGACTAGTAGAAGGGGACCCCGAAAAGTGGCCTCTCATCCAGTGGAATCCGGATCATCTGCACATGCAGAACGAAGAGACAAGAGAGGAAAACGCTTTAAACAGTCATGAGAAAAAGATTTTACTTCAAATATCAGTTATGACATGTAATCATATTTTTAATGATGGTGTCTAAATGCACAGTTCACACAGGTATTAGCAAATCTGATCACAATGTGGGACATTCAACTATTATATATAAAGCATTTTTCCTGTAGGTCTTTTAGTGAGCATATACAGTCAATGCAAGTAAGGAGAACTGCCATTTTTGCTTTGTTCTGACACTAGAGTGCACTCTAGAGCAGGTCTATGAGAAATAGTTAAAATGGAGATCTATTTTTTCCAACACAGAAAaatatttcagctgtttttcacaGTCCTGTTATATTGTAATGCTGCTAACTCACCACCCAATTAGAAGCTAATAGCCAGAATGtagatatacatttatttaatatattcttCTACTTTCCTAATTTTAAGGTgccatagaataaaaaaatattaatttggtCACTGATGATAGTTCAGTACATGCAAGAGAAATTTGTTAACCCCAAACACTGTTGCGTCCTCAAAAGAAAATCCACTGAAGTAAAACAGGACTATAAAACAGGCCAATTCCGAAACATTCCAAAAAAGTATGATTTGactcattttatatttatatgcctTCAAAAGCCTTCCTGggttaaatgcaacagctactATGGGAGAATATTGATAAAAGTCTAAAATGCTAGAGACCAGAGAAAAGCTGAGTGGAGGAAGAATTCCTGTGGGTATCCAATCTTATGACAGGCAGGGAAGAGCTGCAAGGATTGTGTTTTATAGAAAAGCTTTGAATCATTAGGTGCTTGCTGGGTTCTTGTTTAAAAGCTAACCCTACCACTTAAATAAATAACCCAAAAGCTGGTTTTAAACTACTTACACAAATAATGTCAAAAGTAGAAACTAGTAGTAGTGGCTCAATCAAGCATGTAGAAAAATAATGTCCTTCTCTTATactataaaactgaaaaaaattaaatattttgcatAAATTGTCAGATATTCCAAAAATAAACATACTATTGAATTTGTGTTATATTGTTTTTTCCAGATATCAACAATGAATTTTCATACAGTACTGCTGTTTTAAAGTCATTGGTGGTTTTAGAAGGTGATTGTAATTGTATACCGCGCCTTAAGAGGTGTAATTACAAACTGGAACTACTATATGGTTGTTGACATATATAAAGCCCGATATACTGTACacta

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607013.2 True 4462 mRNA 0.44 21 22111114 22128141
XM_015607014.2 False 4318 mRNA 0.44 20 22111114 22128141

Neighbor

gene id symbol gene type direction distance location
ubr1 ubr1 coding upstream 7463 22081687 ~ 22103651 (+)
exd2 exd2 coding upstream 55703 22047614 ~ 22055411 (+)
numb numb coding upstream 64684 22000613 ~ 22046430 (+)
galnt16 galnt16,LOC107707671 coding upstream 116167 21956008 ~ 21994947 (+)
vps39 vps39 coding upstream 162923 21927566 ~ 21948191 (+)
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding downstream 2805 22130946 ~ 22135297 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 463428 22591569 ~ 22594357 (+)
edrf1 edrf1,LOC107729289 coding downstream 499163 22627304 ~ 22637793 (+)
tonsl tonsl coding downstream 510592 22638733 ~ 22663127 (+)
LOC103036290 psmc1,LOC108443803 coding downstream 558590 22686731 ~ 22692160 (+)
G82383 erh,ERH non-coding upstream 32064 22074542 ~ 22079050 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding upstream 230112 21880537 ~ 21881002 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding upstream 232373 21878055 ~ 21878741 (+)
G82345 NA non-coding upstream 241220 21868379 ~ 21869894 (+)
G82311 NA non-coding upstream 322174 21787174 ~ 21788940 (+)
G82438 NA non-coding downstream 10355 22138496 ~ 22141716 (+)
G82465 NA non-coding downstream 106362 22234503 ~ 22234891 (+)
G82476 NA non-coding downstream 156922 22285063 ~ 22285341 (+)
G82487 NA non-coding downstream 227500 22355641 ~ 22356086 (+)
G82493 NA non-coding downstream 238099 22366240 ~ 22368956 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 437676 21520907 ~ 21673438 (+)
G81763 NA other upstream 2437476 19673127 ~ 19673638 (+)
G81761 NA other upstream 2445067 19665736 ~ 19666047 (+)
G81704 NA other upstream 3180360 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3590167 18511622 ~ 18520947 (+)
G82488 NA other downstream 229503 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1102289 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1747298 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1781541 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 2011248 24139389 ~ 24142232 (+)

Expression


Co-expression Network