LOC103028385 (LOC103028385)


Basic Information

Item Value
gene id LOC103028385
gene name LOC103028385
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29734613 ~ 29737276 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607883.2
ACTCAAGTAAATAGTCTTGGTTGACTATGCTTCCCAGCCTGccctaaacaatatttttataaaactgGATATGTTTTGTTGTTCTCAGTGGTTTATTCTGTGCTTGAATGGGAGGTGCAATTCAAGTAGCAGGGTGAATGTAACTGTACTGCCTGAATCTGATTCTGAGAAATTGGTATTTTATGGTATAAATCGAGTTGCCAGCACCGTTGGTTAGATAATAAAGTTCATCTTCGGTGACCACCCTCTGTGACTGTGGCCAAAACATTTCCTTGTATTTCTTCTCCCCCTCTCAGATGTGCTTTCAGAGACCATGTGCTAGCTATAAAAAGGGCTTGGCAGTCACTAGTGAACAGAATTCAGTAGTCTAGCACTCTAGGATCTCTGAGTGAAACCTGCTGCTGCTACCAGTAAAAACAATGTGGTCTAAAGTAGCTAGCGTTTTGATCCTGATCCTGATAGTCTGTATCTCCATGTACTTTGGTGGCCATGGTCTCACATATTCTTTTTTCACCCTGATCCTCTTGATGCTCGGCCAGGCACCGACTCAGAGATGCATGTTCTTATCTAAGAAGTATGAAAGGGCAGTATTGGTAACAGGCTGTGACAGTGGGTTTGGCTATCGGCTTGCTAAGACCCTGGACAGCATGGGTTTCGTTGTGTTTGCAGGGTGTTTGAGCTCTAATGGTCAAGGAGCTCAAACTCTGCTCAAAGAAGGATCTCGGCATTTAAAACTGCTCCAGCTGGACGTGACCAGAGATGAGGACGTGAGGCTGGCTAAGGCCTTTGTGGAAGCAAACCTGCCTGAGAAAGGCCTGTGGGCAGTGGTAAATAATGCTGGTATCAGTGACTGGGGAGAGACTGAGTGGAATTCCATTGAAGACTACCAGAAAATGGTGGATATCAACTTATTTGGCTCAATTCGGACTTCAATTGCTTTTCTGCCTCTTGTTCGGGCATCTAAAGGGCGTATGGTTTTTGTTTCCagtatttttgccttttttaattGTCTGAGTATGGGAGCATACAGTGTGTCCAAAAGAGGTCTGGAGGCTTTTGCTGACTGCTTGAGGGTTGAGCTGTCCAACTTTGACGTAAAGGTCAGCATCATTCAACCAGGGAACTTTGGCCCAGCCACAAACATCAGAAGTAAGAAAACAACCCAGGAAATCTGGGATAAACTGGATGATGAGCGTAAAGTGACTTTCAGCAGAAGCTACATTGAGTTTGCAAATGAATATTTCCAGTCATTATGCAGTGCAGGCTTTAAAGACAGCCGCATGGTTATTGATGCCATGGTGCACGCTCTGAATGCCGCCCAGCCAAAATCACACTACTTGCTCGTCTCCACTGTGGAGTGGGTCTTTTTCCTAGTATTTCCTCTTTTGCCCACATTCATCAAAGATGCAATATTTACTTACACCCCGATTTACCATAAACGCAGAGAGATACTTTCACAACAGAAACAGTAGGTGTTTATCTATTGCATTAAAGGCAATAGAGCTACTGccactgcaaataaaaataaagaaccaAATGGATGCTTTAAAAGTG

Function

NR:

description
D-beta-hydroxybutyrate dehydrogenase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607883.2 True 1554 mRNA 0.44 4 29734613 29737276

Neighbor

gene id symbol gene type direction distance location
pxdn pxdn,LOC107680176,LOC107687838 coding upstream 17742 29626635 ~ 29716871 (+)
LOC103038403 myt1l coding upstream 109019 29414512 ~ 29625594 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding upstream 410170 29265053 ~ 29324443 (+)
adi1 adi1,LOC107753353 coding upstream 518940 29187575 ~ 29215673 (+)
LOC111193134 ltbp2 coding upstream 765585 28854283 ~ 28969028 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding downstream 20551 29757827 ~ 29766422 (+)
nol10 nol10 coding downstream 48750 29786026 ~ 29815914 (+)
odc1 odc1,LOC107753348,LOC107687839 coding downstream 110352 29847628 ~ 29853265 (+)
LOC103038716 LOC108423492,LOC103383742,LOC108269470,LOC108270315 coding downstream 252510 29989786 ~ 30008928 (+)
pask LOC107557849 coding downstream 410983 30148259 ~ 30173142 (+)
G84492 NA non-coding upstream 200270 29533822 ~ 29534343 (+)
G84484 NA non-coding upstream 344925 29389228 ~ 29389688 (+)
G84473 NA non-coding upstream 374954 29359197 ~ 29359659 (+)
G84462 NA non-coding upstream 393400 29340931 ~ 29341213 (+)
G84415 LOC108423477,LOC108269999,LOC107723284,LOC107589779 non-coding upstream 548675 29179869 ~ 29185938 (+)
G84534 NA non-coding downstream 4751 29742027 ~ 29742487 (+)
G84535 NA non-coding downstream 9351 29746627 ~ 29746940 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding downstream 122184 29859460 ~ 29864834 (+)
G84591 NA non-coding downstream 194684 29931960 ~ 29932390 (+)
G84597 NA non-coding downstream 222099 29959375 ~ 29961212 (+)
LOC107197844 NA other upstream 655715 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 690874 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 693006 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 709499 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 763774 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 230274 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 869481 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1717708 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2012427 31749703 ~ 31805403 (+)
G85189 NA other downstream 2086310 31823586 ~ 31824388 (+)

Expression


Co-expression Network