LOC103041516


Basic Information

Item Value
gene id LOC103041516
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26331927 ~ 26335823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607885.2
ACACATTGCTGCTGGTCCTCCACTTCTTCTCGGCTCACTCAGATAGAGGGGGCTTTATAGGGAGTGAAATCTGGAGGACACAATACGATACGCTCTATCTTGGAGGTGTAGATTTTTGTGGATAACATTAGAAGAATTTAAAAGCTGTCCAGAGGTTccagaataaaacatatttaagGATGGATCAAACAGAGCTCGTGACTGTGGCCAGTCTGACAACCCATTTGGATAATATTACAAATTCTGCATCCTCTTCATTGATGATGTTCAACTCATCTGACTGGAAATTAGTTCATGCCATCGTGCCTCCGTACATCTTTGTGCTGTGTTTGACTGGAATTCTCGGGAATGCGTTTGTTCTGTTAGTGTTCTTCCTACAGAGGACCCACTGGACTGTACCTGAGATCTACTTGGGCAACCTGGCTTTAGCTGATCTAATTCTGCTATCTAGTCTGCCATTCTGGGCCATGAACATCCTCAACTACTTCAACTGGCCTTATGGGGAGTTTCTATGTAAGGTGGTGAATGTGGCCATCGTGGTTAACATGTATGCTAGCATTTACATGCTGGTGATGGTGAACATCGACCGCTACCTTGCGCTGGTGCTGACGATGAAAGCAAGGTGGCTGAGAAGGAGACGCAATGCAAAAATCATTACCTTTTGGCTCTGGATTCTCGGAGTGGCCATGGGCATACCTACTCTAACTTACCGGACAGTGAAGACTACCCCCGAATTGCCATACCCGGCCTGCCTTATCGAATACCCTGAAGACTCCCACAGATTAGCTCACAGCCTTCAGATGAACATACTGGGCTTTGCTCTGCCTCTTCTGGCTATAGTCTTCTGTAGCTACAATATCCTCCATGCCCTGTGGAAAAGAATGGAAAATCTGAACATGCACAACGGAAATGACCGGAAGGCCACACTGCTGGTGTGCGCCGTGACCCTGCTCTTCTTCGTTTGTTGGGGTCCGTTCCAGATCGTTACCTTCCTGGATATGCTCTGTGATCTCCACTTCTTGGACAAGAAGTGGTACCACACCTTGGACATTGCACACCAGTTTTCCACCTACTTTGCCTTTCTGAACAGCTGCTTTAACCCCCTGCTGTATGTATGCACAGGCCACTACTTCAGGAGGAAAGTCAGTGATATATACAAGAGGAGGAGAAGCTCGGTTGCATCTGTGATCACCACCCTGCAGCGTTCGGCCGTGTCAACCTACACCCAAAGGACTGATCAAATCAAACCAGTCGTACTGTAGGATCAGTTCTAGAGCATATTTTAGTGTACTATTGCTATATATGGATGTGGAAGGTTCATATGTTTGGATCTTAATGTGTATAATATTAACAGTATCCAAAACAGAAATAGTGGCCAACGAATAGCAACTTGTGTGGTTTGGACATATGCATGTGAAGGGATATTTGGGAACAATATAAACAGTTACGCGATTCTGCAGTTCACGCACTGTCTGCAGCTCATTCTTCACACTCGTCCTGTTCAGTGTCAAGCCCTTGTACATACTGTGTATTACTCAGCCCGTGTAAGCTGAGAAGGCtgaataaatattgtaatatgattaagatattatattaaaaaactaCTCACACAGAAGAGAAGTGTATACAAAAAAGTGTGACAGGACAGAAGTATTGGAACACACgcttattccttgtttattcaatggtaaaaaaaaattacctgcTTCTTTGTTAGAATAGTAACTGTTCCTACTGTCCATTAAAGGCTTTCTACTTTTTtttgagcattgctgtgagtatGCTCATCCCAAAAGAGTTTTATGTGACACCAtcgttccagagaacacagtttcactcCAGAGCTCAATTCTTGGGCCTTTATACTCCTTTAGCCAGTGGCGCCAATAAGTTCATTtttttagtagattttttttttgagtaataaAGATGTGATTCTATTGGATATGCTTCTCTAAAGGCACTATAtaacctctgtgtgtgtgcattaacATAGCTGAATTTGCTATCCATGCACCTTAAAAGTATCTgaaagttgattttttttaaaggggtgtccacaaacatatataaagtaaatgtgtttcatattttggttgtttttttaatacacttaaaaGTGTAATGACTAACAGCAAAGTAGTACAGGAGAGCTATAACCACCTGAATGgaaaataaatccaataaaTAAACTAGGACCTAATATGACAGTTGTAAAATATTCATTTGAGTACACACCTGAGTAGAAGTGAAAGTGTTATCAGGAAAGTACAGATCTATTAAAAAGTACCTTACATAAACGGACCTGAGAAATTTTAATGATCGAATGATTAGACTGAAAAAGTACTTTCTATGCTCCCTATAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004947 bradykinin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607885.2 True 2366 mRNA 0.41 2 26331927 26335823

Neighbor

gene id symbol gene type direction distance location
LOC103041814 LOC108423416 coding upstream 971 26328801 ~ 26330956 (+)
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding upstream 415083 25835140 ~ 25916844 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding upstream 607018 25718474 ~ 25724909 (+)
gdf3 gdf3 coding upstream 614481 25715058 ~ 25717446 (+)
crls1 crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593 coding upstream 641033 25684805 ~ 25690894 (+)
LOC103041211 LOC103041211,LOC108423415 coding downstream 15308 26351131 ~ 26352435 (+)
LOC103030701 NA coding downstream 21956 26357779 ~ 26360746 (+)
ptpn21 ptpn21 coding downstream 65264 26401087 ~ 26420310 (+)
LOC103029223 akirin2,LOC100499587,LOC100379102 coding downstream 89275 26425098 ~ 26434192 (+)
LOC103026145 LOC108270054,LOC108423543 coding downstream 138952 26474775 ~ 26484622 (+)
G83649 NA non-coding upstream 20979 26310709 ~ 26310948 (+)
G83601 NA non-coding upstream 96752 26234916 ~ 26235175 (+)
LOC111193229 NA non-coding upstream 338915 25984681 ~ 25993012 (+)
G83522 hao1 non-coding upstream 529475 25798460 ~ 25802452 (+)
G83456 NA non-coding upstream 794657 25517590 ~ 25537270 (+)
G83661 NA non-coding downstream 3359 26339182 ~ 26339699 (+)
G83663 NA non-coding downstream 4008 26339831 ~ 26340272 (+)
G83672 NA non-coding downstream 86691 26422514 ~ 26423061 (+)
LOC111193231 NA non-coding downstream 171516 26507339 ~ 26565844 (+)
trnay-gua_9 NA non-coding downstream 172217 26508040 ~ 26508125 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 4589 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 26544 26275001 ~ 26305383 (+)
G83602 NA other upstream 78325 26235498 ~ 26253602 (+)
LOC103033015 LOC108423550,LOC108270308 other upstream 356644 25919557 ~ 25975283 (+)
supt3h supt3h other upstream 1002445 25160918 ~ 25329482 (+)
spata7 NA other downstream 57067 26392890 ~ 26399267 (+)
fermt2 fermt2 other downstream 392000 26727823 ~ 26777488 (+)
fam98b NA other downstream 1479982 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 1488433 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 2634441 28970264 ~ 28970839 (+)

Expression


Co-expression Network