dlst (dlst,LOC107749530,LOC107702243,LOC103357959)


Basic Information

Item Value
gene id dlst
gene name dlst,LOC107749530,LOC107702243,LOC103357959
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28662092 ~ 28675663 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607893.2
TGGCTGCTGTTGGTTCGCCCCGGCGTGGTTGTGTCTCTCTGCCGCTTCTCCTGCTCCCTCCTGCGGGCCTTTACCGCTCTGTGTCCGGCAGGCGCGGATTGCCGATATGTTGTCCCGTTCCCGCTGCTTCACCCGCACCTTCGGCCGCTCCATCTCCGCCCTCCGGCAGagTAACAATGTCCTAGCAAGAAGAGCTGCTTCAGGCATATCATCTTCTCAGTGCATCTCAGTCAAGGACACTTTGAATTGTGAGACCAGGCCCAGCATCTTCCAGATCAGATACTTCAAGACCACTGCGGCTCACAGGAATGAGGTTATCACTGTTAAGACTCCTGCCTTTGCGGAGTCTGTCACAGAGGGGGATGTGAGGTGGGAAAAAGCTGTTGGTGACACAGTCACAGAAGATGAGGTGGTTTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTACCGTCTCCTGCTGCTGGAGTGATTGAGGAGCTGCTGGTTCCTGATGGAGGCAAAGTGGAAGGAGGCACTCCTCTGTTCAAACTGAAAAAAGGAGctgttgGTGCTGCGAAGGCGACCCCTGCCCCAGCAGCAGAAGCACCTGCAGCTGCAGCCCCTCCCCCACCACCTCCGACCCCTGCTGCAGCTGGGCCCATCCCTACCACCATGCCCCCGGTGCCACCAGTGCCAGCACAGCCCATCGCTTCTAAACCAGTttcagccatcaaaccaactgcagctcctgctgctgcaccTGCAGACACAGCCAAGGGGGCCAGGTCAGAACATAGGGTTAAGATGAACCGTATGAGGCTGAGGATTGCTCAAAGGCTGAAGGAAGCCCAGAACACCTGCGCCATGTTGACAACTTTCAACGAAGTGGACATGAGCAACATCACAGAGATGAGGAAGGTGTACAAAGATGCTTTTCTGAAGAAGCACAACATCAAACTGGGCTTCATGTCTGCCTTCGTGAAAGCCGCTGCCTATGCTTTGATGGACCAGCCTGCAGTCAACGCCGTTATTGATGACACAACCAAAGAGATTGTTTACCGGGATTATGTGGACATCAGTGTGGCAGTAGCAACACCAAAGGGACTAGTGGTACCAGTAGTTAGAGGAGTGGAAGGAATGAACTTTACGGACATTGAGAAAGCCATAAATGAGCTTGGAGAAAAGGCTCGTAAGAATGAACTGGCGGTGGAGGACATGGATGGTGGCACGTTCACAATCAGCAATGGAGGAGTGTTTGGTTCCATGTTTGGTACACCAATAATCAACCCACCACAATCTGCCATTCTGGGCATGCACGGCATCTTTGACAGGCCGGTGGCTGTTGGAGGCAAGgTTGAGATCAGGCCCATGATGTACGTGGCTTTGACCTACGACCATCGCTTAATTGATGGCAGAGAGGCAGTTACCTTCCTCCGTAAGATCAAGTCTGTTGTCGAGGACCCCAGGGTGCTTCTCCTGGACATGTGAGGATTTAAAGAAACGCACATGAATGGCAGACTTCCTCAAAGTACCAAACGAGTTCCCATCTCACACAGTGGTAATGTCCCCTGATATTCCTTGCTGCATATGATTTAACGATGTTGGTTAACTAGAGAAAGAACACTTCACTATGTTGGTTCACAATGGTTCATTCACTGGAAAGAGGGAGTAGGGAAATCTAAATTCGCATGGGCTAGAATTATGGAGAGGGTATTATAGTATAACATGTTCTCAGCTGGGATCTTATTTTCTTAGCAGGAAGGCTGTCATGCAGTTTCCCAATGCTTCTGccattttttaaacacttgtATAATTGTAATCCTTACAcagttaatttaaaataattgtacaAGTTTTATAATTATCAGTCCTATAACTAAGTTGCTCAAACTGTCCAGTTATTTGTCCCCTGAATGGCAAAGCAAGCGCactagtatacagtatattatgtgTTTCATATTCTCTGTGTAAAGAGTATTTGAAGAAGTTGTCATCCATCAAATGAACAGCAGACCAGAAACACTATGTTCCATTTTGCCATTGGTCTCAagttctatttttctgtttttgttttgtttattttttgttctttcaatGTTTGATACATACGTAACTAGTATGTCCCTCAAACAACTGAGATCAGACTCATTGGGAACAGATTCTGTCTATGCTGtttaaagaaattaatatttaatgaggaaagcttttaaacaaataaattgaaGAAAATGA

Function

symbol description
dlst Predicted to enable dihydrolipoyllysine-residue succinyltransferase activity. Acts upstream of or within several processes, including ATP biosynthetic process; heart contraction; and mitochondrion morphogenesis. Predicted to be part of oxoglutarate dehydrogenase complex. Is expressed in several structures, including immature eye; musculature system; nervous system; neural plate; and segmental plate. Human ortholog(s) of this gene implicated in Alzheimer's disease and paraganglioma. Orthologous to human DLST (dihydrolipoamide S-succinyltransferase).

NR:

description
PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity molecular_function

KEGG:

id description
K00658 DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607893.2 True 2215 mRNA 0.47 15 28662092 28675663

Neighbor

gene id symbol gene type direction distance location
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 101998 28428946 ~ 28560094 (+)
gpatch2l gpatch2l coding upstream 244287 28375537 ~ 28417805 (+)
LOC111193237 NA coding upstream 305283 28355574 ~ 28356809 (+)
ift43 ift43,LOC107688076 coding upstream 341600 28297960 ~ 28320492 (+)
ttll5 NA coding upstream 396765 28182427 ~ 28265327 (+)
LOC103029222 NA coding downstream 63578 28739241 ~ 28748428 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 99486 28775149 ~ 28801239 (+)
LOC111193134 ltbp2 coding downstream 178620 28854283 ~ 28969028 (+)
adi1 adi1,LOC107753353 coding downstream 511912 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 589390 29265053 ~ 29324443 (+)
G84264 NA non-coding upstream 74138 28587396 ~ 28587954 (+)
G84219 NA non-coding upstream 287575 28373948 ~ 28374517 (+)
G84164 NA non-coding upstream 301103 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding upstream 330684 28328775 ~ 28331408 (+)
G84001 NA non-coding upstream 738734 27923069 ~ 27923358 (+)
G84280 NA non-coding downstream 30230 28705893 ~ 28723051 (+)
G84291 fcf1,LOC107704360 non-coding downstream 94505 28770168 ~ 28772835 (+)
G84294 NA non-coding downstream 127451 28803114 ~ 28803321 (+)
G84296 NA non-coding downstream 148161 28823824 ~ 28825276 (+)
G84298 NA non-coding downstream 249947 28925610 ~ 28926176 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 830508 27824256 ~ 27831584 (+)
fam98b NA other upstream 839881 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1884604 26727823 ~ 26777488 (+)
spata7 NA other upstream 2262825 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2334754 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 294601 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 323839 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 365316 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 367554 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 396228 29071891 ~ 29078898 (+)

Expression


Co-expression Network