LOC103029223 (akirin2,LOC100499587,LOC100379102)


Basic Information

Item Value
gene id LOC103029223
gene name akirin2,LOC100499587,LOC100379102
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26425098 ~ 26434192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607914.2
GATTATATACGTTTCCTGTCCAGAGAAAGGAAGAAGAGAAAGGACCTATCGTTAACGGCATGTGGAGAAAAAACAAAccgtgtgtgtggagagagagataaagcctTTTAGAGGGGAGCGCTGAACCTCGCAGTGCTGTGTCCGTGTACTGTGTGTTTGCGTGGGCCAGagtagctaacctagctaactagctatagGTCTTTAGTTGAGTCTCAGCGGGGATTCGCTGCGATTTCTCGGGCGTAGCCTGTTTATAGTCTGATTTGTGAAAACAGGTAACCGGCTGGTAGCTAGTTTGCTAACCATCGGTAACCCAAGCTAGAAACGGCGACTGGAAGGCCCTGACCGGCTTAGTTAGCTAACGGttttttagctagttagctggctagctatCGCTAGTTAGCCAGGTTAGCCTAGCTTGCAGACTGGAAaggacatttatttattttgctaggTAGTTAGCTATCAGCTAATTTAATCTACTAGTAATTAGTTAAATTAGCTAAGCTAGGATAGCTAACTTGTTAGCTCCCCTTAGCTGAACTGTTGCCTTCATTTTAACGTTACCGTGTTTACTCGACTCAGCTGCAATGGCTTGCGGGGCTACACTGAAGAGAACCATGGATTTCGATCCGCTGCTGAGCCCCAGCTCGTCTAAAAGAAGAAGATGTACCCCGAtgtcttcatcatcatcatcctcctcctcctcctcttcatccccCAGAAAATACCTCCGCCATGAGCCGTCCCCTTTCGGAGAGGTTTCGGCCACACTCACCACAGaGCAAATCCTTCATAACATAAAGCAGGAGTACAAACGCATGCAGAAAAGGAGACATTTGGAGGGCAGTTTTCCACAGAGTGAAGCTTGCTGTTCCCTTGAGTCTCAGTCTCATTCATCTATTTTAGGTGGTTCCAGCTTTCCAGATACGTCCTCTGGAGCTGTGTCACCAACAAGAAGAGAACAGCCACTCTTTACTTTAAGGCAAGTGGGGATGATCTGTGACCGTCTCTTGAAAGAACGTGAAGAGAACGTCAGAGAAGAATATGAGGAGATTCTGACTTCAAAATTGGCAGAACAATATGACACCTTTGTGAAGTTTACACACGATCAGTTAATGCGGCGGTTTGAAGAACAGCCGGCTAGTTATGTGTCTTGAAAACACCACCTCATCGCCAAGATGCTATTCAACTTCAGATTGCTGCAGTTTGCGCTGAATGTCTATTGATTACACCACAGACCCGGTTTGAAATACAACTGCTACAGCGTCACGCTGACAGAGGCTGCCTTTAGAATTTGTCAGTTAATATTATTGTTCCTTGTGAACCTGGGTGCTTCCTCTTGTAAATGTATACGGACCTTTTATGTCTGTTATTCTACCAGTGGCCTACTTATAATATATACCATGAGCCTTCTCTCACATTTTGCTCGCATTCCAGAAGTGTTTGTTACTAGTACACAAGTTATCAATGCAGATTACTGTGCATTATTTTCTGAACAGTCGTTTCACATGTGACATTTGTTATTATTAAGATGAAGAAATCTGTATACCTCTTGCCAAGATTTCCCAGTCCTAGTCCTTGAGAACAGTATGCTACAGAgcttagtatttagtattttatctctttttaaCACTCTTTATACAGAATACGTTAGATGAGCCAAACCAGATGAGAGTGGACTAAGTTGCAGATTGCTGCGGTTCTCCAGGATTGGGATTAGAAAACGTTTCTGTGTTATGTATAAAATTAGTTCCTGAGATTTCCTAAATCActctcttctttttatttagctttactCTGTATTGATATAGACAAACCCAagcattaaatcattttattaataaa

Function

symbol description
akirin2 Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of innate immune response and positive regulation of transcription by RNA polymerase II. Predicted to be active in chromatin and nucleus. Is expressed in female organism. Orthologous to human AKIRIN2 (akirin 2).

NR:

description
PREDICTED: akirin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607914.2 True 1848 mRNA 0.43 6 26425098 26434192

Neighbor

gene id symbol gene type direction distance location
ptpn21 ptpn21 coding upstream 4788 26401087 ~ 26420310 (+)
LOC103030701 NA coding upstream 64352 26357779 ~ 26360746 (+)
LOC103041211 LOC103041211,LOC108423415 coding upstream 72663 26351131 ~ 26352435 (+)
LOC103041516 NA coding upstream 89275 26331927 ~ 26335823 (+)
LOC103041814 LOC108423416 coding upstream 94142 26328801 ~ 26330956 (+)
LOC103026145 LOC108270054,LOC108423543 coding downstream 40583 26474775 ~ 26484622 (+)
snx14 snx14 coding downstream 53841 26488033 ~ 26506512 (+)
bmp4 bmp4 coding downstream 170526 26604718 ~ 26613764 (+)
LOC103023862 ddhd1 coding downstream 259226 26693418 ~ 26716015 (+)
stxbp6 stxbp6 coding downstream 361616 26795808 ~ 26897068 (+)
G83672 NA non-coding upstream 2037 26422514 ~ 26423061 (+)
G83663 NA non-coding upstream 84826 26339831 ~ 26340272 (+)
G83661 NA non-coding upstream 85399 26339182 ~ 26339699 (+)
G83649 NA non-coding upstream 114150 26310709 ~ 26310948 (+)
G83601 NA non-coding upstream 189923 26234916 ~ 26235175 (+)
LOC111193231 NA non-coding downstream 73147 26507339 ~ 26565844 (+)
trnay-gua_9 NA non-coding downstream 73848 26508040 ~ 26508125 (+)
G83760 NA non-coding downstream 284786 26718978 ~ 26719365 (+)
G83759 NA non-coding downstream 285443 26719635 ~ 26723005 (+)
G83761 NA non-coding downstream 290147 26724339 ~ 26724613 (+)
spata7 NA other upstream 25831 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 97760 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 119715 26275001 ~ 26305383 (+)
G83602 NA other upstream 171496 26235498 ~ 26253602 (+)
LOC103033015 LOC108423550,LOC108270308 other upstream 449815 25919557 ~ 25975283 (+)
fermt2 fermt2 other downstream 293631 26727823 ~ 26777488 (+)
fam98b NA other downstream 1381613 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 1390064 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 2536072 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 2565310 28999502 ~ 29025114 (+)

Expression


Co-expression Network