LOC103024901


Basic Information

Item Value
gene id LOC103024901
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7759849 ~ 7764677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607946.2
CAGCATGGCTGAACTTTAATGGCGTGCTGTTGCTTCCCTTCAGGAATAGGTTGTAACTATGGGAGCTGTAGCgctttgtgtgtatttaatttTGATGACTTTAGTGTGGTCTGGGCACTCAGTGGAGAATGAAGGACCTGGACTGTCTCCAGTTTATTCGAAGGCTGTTTATCAGGATGTTTGGCCTGACTTCTCTATGCTGACTGGTGGGGTTTTTGGGAAATCTCTGCTGCAGCCAGTTGGTTTACATGAGCTTGGTTCTAGTTATCCAGTTCCTTTCCATCCTTGGAGCTTCATGGACCCAGGAACACGCTTTAGTATTAAGGCCATGAACTCGACTTTAAATGGTCAGGCTGGGACTAATGTCTACAGAAGAGGAGAGCTGGTGTACCTGCAAGTGTCCTCCTCCAGCTTGCCTGGCCAAGAGCTTTATCTTCAGTCCTGCTATGCCACTTCAACTCCGAACCACAACGATAAGTCCACACTTGCGCTCATTTCTAACAAAGGATGTGTCTCCTCGAAACAGTCTGTGGTGAAGTTCGTCTCCAGACAGAGTGACGTGGTTAACTTTGTCTTGGACACTTCCAGTCTAAAGTTCTCTCAGATTTATGTTCACTGTATTGTGGCCCTCTCTGATCATGGACTGACTCCAGACACCAAGTCCTGCAACTACGTAACTGACAAATTCAGGTGGGTGGAGTTGGGTGGCCGGACTGACGTATGTGAATGCTGTGCAACAAAATGCAGATACCCCTCTGACTATCCGGCTTCTTTTGGTGAGTTCAAAGCAGTGGTGAGCACTGGTCCACTATCAATCAAGGAACAGGAACTTGAGAAGCAGCCGCTGACTGGCAGAACTCCCACCATTTCCAATAGAAGACCCTGGATCTTGTCTGGTGCGTCTCCATCAGGAGCATTGACCTCTTCAACTGGAAAGGGTTGGATTGTCTCTGGAGCATCTGTGTCTGGCAGCCCTAAGGTCAACCGCTCCCCCTGGCAGACATCACCTGTAACTGCAGATTTGGCTGTAGGCCGAGGCCTAGGAGATGCTTTGTCACTCTTGCTACCAGGGCTTATGATGGGTGTTCAGTCTAGCCCAGTCATTGAGATAGAAATTGGCTATCCTCAGAGGAAGGGTAGAGCTAATCTTCTATCCGGTCAAAGCAGCGTTCCAGCTGATGTGTTTTGGAGGAAACCAGAAGCCAAATTTGAAGCAAGTCTGCAGAGAGAAGATCCACAGCAGGTGTTTCCAGCAGTTAAACCTGCACATCAAGAACTTTTGGGCATGGCTGATGGGTATCCTCTGGCTGATGCCCCACATTTACCGAGTGGTGGACACTATGCAGAAGCTCCTCAGCCACTTTTGGAGAGCCTTCCTGACAAGCCTGAGGAGGAACTGAGGGGTGATGTGTTCACAAATTTTAGAGAGCCACAGCTGGTGAAGGTTTCCTCAGGCGAGAACTCTGTTGCTTCTATGTATGATGTGCAAAAAAGTGATGTTCCAGAACTGATTGAAGACCACGATGAAGGTGATGTTCTGGTTGTCTCTCACACAGAACTCTTGTTTAAAAAGGCTAATGCAGATGTACTGGATAAGCCTGAGTTTCTGAAGAAGTCAGAGTTGACTTTTAAGGGAGTTTCTGATGAATCAAGCTCACTTGACTATGCAGAAGAGCAGGAGACACCTGGTTTGGATGATCGGGAGGAGTCGGCAAAACTGAGTGCTAAGAAAGAACTGGTGTCCTCCCTGATGGCGCTAATGAGGAAGCTGAATAAGATGTTGTGACCTGACTGAAGTACTGCTGTACAACCATGAAAGCTTAaactgtgtgtaaataaaatgcaaatttgCAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607946.2 True 1856 mRNA 0.47 7 7759849 7764677

Neighbor

gene id symbol gene type direction distance location
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 15387 7682841 ~ 7744462 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding upstream 316128 7410429 ~ 7443721 (+)
rab3gap2 rab3gap2,LOC107659254 coding upstream 447557 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 482746 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 515097 7226490 ~ 7244752 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 1892 7766569 ~ 7799259 (+)
ppie ppie coding downstream 37543 7802220 ~ 7808950 (+)
erich1 NA coding downstream 650530 8415207 ~ 8442555 (+)
LOC103031442 LOC103359616 coding downstream 704924 8469601 ~ 8507161 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 787771 8552448 ~ 8566788 (+)
G78728 NA non-coding upstream 1649 7751414 ~ 7758200 (+)
G78725 NA non-coding upstream 11415 7747021 ~ 7748434 (+)
LOC103026041 NA non-coding upstream 130957 7626997 ~ 7628892 (+)
G78668 NA non-coding upstream 207481 7547456 ~ 7552368 (+)
G78646 NA non-coding upstream 370160 7389465 ~ 7389689 (+)
G78753 NA non-coding downstream 219904 7984581 ~ 7986723 (+)
G78760 NA non-coding downstream 229950 7994627 ~ 7996807 (+)
G78786 NA non-coding downstream 518263 8282940 ~ 8332434 (+)
G78792 NA non-coding downstream 591407 8356084 ~ 8356486 (+)
G78794 NA non-coding downstream 642483 8407160 ~ 8407552 (+)
fam167b LOC108433301,LOC101067225 other upstream 30848 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 152185 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 887444 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2229794 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3461665 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 765177 8529854 ~ 8549968 (+)
G78818 NA other downstream 771239 8535916 ~ 8537682 (+)
spata17 NA other downstream 1730772 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 2118329 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2773402 10538079 ~ 10556868 (+)

Expression


Co-expression Network