LOC103042422 (LOC107594852)


Basic Information

Item Value
gene id LOC103042422
gene name LOC107594852
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1015833 ~ 1033566 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672449.1
ATGGTTGAAGCGGTGAATAAGGAGTCGTATCCTCTCCTTCATAGAAATGCTCTGGCTCCGTGGAGGCTCCTGAGGAGCAGAAGGGAAGATCTGGACAGTGAGCAGCGATGGAGACAGacgtctccctctctctgcagCTCGACTCGTCCTGATGAACCTCAGAAAGTAAAGGTGGGTTTATCCAGCGCTGCTCCTCGATTAATCCGGACCCTCAGCGTACCTGAGACCAGCTCCACCTGCCCTCCACCTGGATTCTCCTCCATCACCATCACCGCTCGAAGACTTTCCTTCAGCGGGGAGCTCTCCAACCAACAAACCCtgggagGACATCAAGGATTAAACCCCATGACCCGACCTGAGCtgcttcatcatcatcatcgagCATCCTCTTCCTCAGGAGTGAGATTGagagataatgatgatgatgatgatgatgatgatggtgatggtgatgatgatacaGCAGTAAAGAAGAAGATATCAGGAGAGAAGATTCCTGAACACAGACACAGTTTTACTGATAGTAGAACATCCAGAAACGAAGCTCATGAAGCTCCTCCAGTCTCAAAACGCCACATCTTTCGCTCCTGTGCTCACCTGGACCTTCTACCTGGACCCTCCCAGTCCTCCAACTCCATCCTTTACCTGGATAAATCCTTCTCTATATCTCTGGGACGTACTTCTCCTCAAACCATGCACAGATCCACTCTCTCACTTCAGCTCAGAGGGAGTTTCAGCTCCTCCAGTGACTGGAATTTACTGGATTTTACTCAGAATGGAAAAGGAGAACAATTACAGTGCTTTGAGgacaccacctccacctcctccatcacctccatcacctccatcaCCTTCACCACTGTCAACTCCAGACCCACCAGCTCAGACTCCACTCCAGCGACGGACACTTTAGCTCCGGCTCCATTCAGAGCGAGGAGCCActcatcctcatcttcatcctcatcctcagcagcagcagcagcagtatctGGATCTGTGGTCCGGCTGAATGGAAAGACTAATGGCGTCTCTGGGCCTCAGAAAAGCAGCAGTGGAAGAGGAAGTCCTGATGACTCAGATAACTCTAGAGGGAATATAAGAAGCTCTGAAGACGGCCGAGCGCTGAGAGTTCGTTCTGATACGGTTCTGAAAGTTCAGGAGTGTCCAGTTTCTCCACACGTGCTGAATTGTAGCTGCGGATGCAGCAGAAACCAGCCCGGCTTCCTCAGCCTGAAGgAGGCTCTGGAGCTCTTTCGACCCGACTTCATCTCCCGCTCTCAGAGACGAATCCGCAAACTGGAGCAAAAGACCAGAGAGAGGCGGAGCTTACAGAGCACAGATGAGATGGGGACGGACTCAACCAATAGGAAGCAAAATTGCACCAAGCCACATCCACTTAGTGATAACCTTTTCAAACCCAAGGACAGGGTGATTTCAGGCAAGGAGATGCAGCTCAGATCTCGACGgATTTACAACAAACTCCCGGAGGTGACgaagaaaaaggaagaagagaagaggaggatgGTGCTGCAGACCAACCGACTGAGAGCTGAAGTTTTCAAGAAGAAACTTCTGGATCAGATCTTACAGAGAAACAGCGACTGAATGGCGTCTGATTAGAATTCACGTCCTTCAGCCTCCTCTTGCCCGCGGCGATGAACCGAAGACTCGCGAGACCTTTTCAGGCCACAGTAGAGATCAGTGCAGGCTTTACGCATGCATGGctcaaaatacaaaacatgtttcCAGGGTCTGTTTATGTAGCGATGACTGATAATATCCTAAAATGAACAggaaaaaatgggaaatggaAAATTACTATGAGCTTAATGTTGAAATTCGCAGCTTCtacatgcttttgtatttctgcTTGGGTCTCGACTGACCTTACAACACtccaaaaaagtgtgaaaaagaaACTATCCAtccgttttctgtgaatcagagGAAAGGTTGGCGCAGAAATCATTGTTTGCTTCTATAAACTGTTGGAAGACGTCACTATAAGGAAACTTGCAAAGAACCACCATGGCACTACCCTTCATTCATCAGCTCCCACCAGAGCCACACCCACTTGATCAGTTAAACAATTTCACCACTTCAGTCATTTTGGttcagaacctcagacagtacacagcaggataagccagcagacttcttctgaaggagTGATCTATAACTtctgtccgtggcaagtcagcagacaAGCGGCAAACGACAAATCGAGTTTAACTAAATTAGTAATTCCGTTTGAATCTCGACTCTATAAACACTACAAAACTGGAAATTAGTAAATCAGTTGAAAAATTTAATTAGCcggcagacttcttctgagggagggatctataccttctgtccgtggcaagtcagcagacaAGTGGCGACAGACAAACCGATTGGAActaaattagaaagaaaactttAGGAAGAAAAGAGATTTAAAAGAGATTTAGTTTAAGTACTTAACAGAATACAAGACTGTATCTCTTTTTCGGTCTACTATCAGAGAGTTCATTTAAGGACAATTGCCAACTAACatttttaatctaaataatctttaaaactttaaagtggacatattatgcaaaactaactgtatgcttttgtatttccacttgggtctcgactCTACAAACACTCCAAGACGGTAAAAAAGTAATCATTTatccattttctgtgaatcagtggAAAAATTCAAGAATCAAGGTGTCAAAAATCTTATTCTTCtttgacgtcacaataaggaaacctgcaaaGAACCActctggctccacccctcacccatTAAAGTTCACAAGAGCCCCACCGACTAGAACATTTGAAGAAACGATTGcactttaatcatttttataaagAACCTAAGACAATAAACAGCAGGATTTAGGCaacagacttcttctgagggagggatctatacctactgtttGAGATGAAAGTTCTTATGGAttgcaaaatgaatt

Function

NR:

description
PREDICTED: centrosomal protein C10orf90 homolog

GO: NA

KEGG:

id description
K16773 FATS; fragile-site associated tumor suppressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672449.1 True 2960 mRNA 0.45 8 1015833 1033566

Neighbor

gene id symbol gene type direction distance location
eef1akmt2 mettl10 coding upstream 177680 834977 ~ 838153 (+)
arhgap5 arhgap5,LOC107594795,LOC107733129,LOC107719447,LOC107561551 coding upstream 201143 776124 ~ 814690 (+)
nubpl nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123 coding upstream 254110 754239 ~ 761723 (+)
cinp NA coding upstream 344258 667205 ~ 671575 (+)
adprhl2 adprhl2,LOC107697751,LOC107674064,LOC107594801,LOC107719508 coding upstream 349529 661539 ~ 666304 (+)
adam12 LOC108436745,LOC108270250,LOC107752796,LOC107697763,LOC107592760,LOC107733079 coding downstream 5308 1038874 ~ 1179637 (+)
LOC103043042 LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766 coding downstream 153554 1187120 ~ 1203142 (+)
LOC107197738 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 coding downstream 270501 1304067 ~ 1318118 (+)
gcfc2 gcfc2 coding downstream 285853 1319419 ~ 1329088 (+)
LOC103037734 LOC105015678,LOC106588052 coding downstream 436449 1470015 ~ 1479658 (+)
G77215 NA non-coding upstream 38381 970551 ~ 977452 (+)
G77198 NA non-coding upstream 78600 936248 ~ 937233 (+)
G77207 NA non-coding upstream 102173 913108 ~ 913660 (+)
G77203 NA non-coding upstream 107553 907806 ~ 908280 (+)
G77201 NA non-coding upstream 111847 903418 ~ 903986 (+)
G77245 NA non-coding downstream 204778 1238344 ~ 1238806 (+)
G77259 NA non-coding downstream 232271 1265837 ~ 1266074 (+)
G77375 NA non-coding downstream 310530 1344096 ~ 1345264 (+)
G77376 NA non-coding downstream 311777 1345343 ~ 1349654 (+)
G77373 NA non-coding downstream 334536 1368102 ~ 1368585 (+)
G77212 NA other upstream 6991 1005129 ~ 1008842 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 80155 883297 ~ 935678 (+)
G77154 NA other upstream 383461 631714 ~ 632372 (+)
G77059 NA other upstream 495243 519633 ~ 520590 (+)
ldah ldah other upstream 882530 84719 ~ 133303 (+)
G77410 NA other downstream 451104 1484670 ~ 1485050 (+)
c9h15orf52 NA other downstream 495404 1528970 ~ 1563180 (+)
G77471 bub1b other downstream 659790 1693356 ~ 1696981 (+)
zfyve19 zfyve19 other downstream 664399 1697965 ~ 1708297 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 878966 1912532 ~ 2009418 (+)

Expression


Co-expression Network