plcb2 (plcb2)


Basic Information

Item Value
gene id plcb2
gene name plcb2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1581756 ~ 1617335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672450.1
gaTCCCTGGTCTCCACACACTGAGCTGAGCAGGCCAAGATGATCAGGAAGCGCTACTTTCTGAAAGAGCCTGAGGTTAAAGACTATTTAATCAAAGGAGAGAGATTCACCAAATGGAAAGAGGACTCCTCCCGCACGTCACACGTCACCATGAAGATGGACCCAAAAGGATTCTACCTGTTCTGGATCAATCAGAGCAAAGAACTGGAAATCCTGGACGTTGCGAACATTAGAGACACGAGGACAGGGAAATACGCCAAACTGCCCAAACAACCAAAAGTGCGTAATGTGTTCAACATGGACTTTCCTGACAGTAATCATTTAGCTAAAGCTTTCACCATCATTTCCGGCCTCGACATGGTCAATCTCACCTACCACAACTTCTTTGCTGCCAAAGATAAAGTGGTTCAGAACTGGGCTGATGACATCCTGGCCATCGCCTACAATGCTCAAAGAGCCAACGTCTGCAGACAGATCTTTTTGGACAAGCTGTATGTTCGGCTCTCGCTGCACACCCATAAAGATGGAAAGATCCCGGTTAAACTTATCTATAAGATGTTTCCAGCAGATAAGAAAAGGGTGGAGAGTGCGCTGGCGGCTGCACACCTCCCCAAGGGAAAGTTTGATCACATGAAGCCTGATGTTTTCACTGAAGCTGCGTTCAAGACCTTCCTGATAAACCTGTGCCCACGCCCAGAGATCTATGAAATCTTCACCTCCTACTCGACTAAACCCTACATGACGAAGGAGAATTTCACCAAGTTCCTGCATGAGAAGCAGCGAGACTCTCGGCTGAACGATGAGCTTTACCCTCCTCTGAGATCTGAGCAGGTGAAAGCTCTGATAGAGAAGTACGAGACTTCCTCCAACGCTAACCGCAGTCAGATATCCCCCGAGGGTCTGCTCTACTTCCTAATGGGACCCGAGACATCACCTGTGGTTTTAGATAAACTGGCCCAGTGTCACGACATGACCCAGCCAGTCCCTCACTACTTCGTCAAATCCTCCCACAACACCTATCTCACTGctggGCAGTTTTCCGGCGTGTCCTCTCCGGAGATGTACCGGCAGTGTTTGCTGGCAGGCTGCCGCTGTCTGGAGCTGGATTGCTGGAAGGGCAAACCGCCGGAGGAGGAGCCAATCATCACCCACGGCTTCACCATGACAACCGAGATCCTGTTCAAGGATGTGATTGAAGCTATAGCCGAAAGTGCTTTCAAAACCTCCAAATATCCCATAATTCTCTCCTTCGAGAACCACGTGGACTCAGTGAAGCAGCAGGAGAAGATGGCCAACTACTGCAAGACCATATTTGGAGATGCTCTTCTCACTGAACCCTTGGAGAAGTATCCTTTGAAGCCAGGTCAGCAGATCCCCAGTCCTGCAGAGCTGATGGGTAAAATCCTGATCaagaataaaaagaacagtGAGCCTCAGGCTAAAGCAGCTCAATCTAATACAAAGAAAGCAGCAGGTCAAGATCAGCAGCAAACAGCCTCCAGCTCATCTGATCCAAACCAAACTACCCCTCCAAACCCGGACAACCAGGGGGAGAACACAGCACAGCCAGCACCCGCCCCCACTACagGGGAGGTGgctgaggagcaggaggagcaAGAGCCGGAGGAGGAGCAGGATGAGGAGAAGATGAAGAACTCAGATGAGGGTACAGCTGGACAGGAAGTAACTGCGTATGAGGCGATGTCCTCACTGGTCAACTACATCCAGCCCAACAAATTCATCTCCTTTGAGAACGCTAAAAAAAAGAACAAGAGTTACGTGATTTCCTCCTTTGTGGAAACCAAGGGTGAGAGTCTGATCAGCAAGACGGCTGTGGAGTTTGTTGAATATAACAAGCGTCAGATGAGCCGTATTTACCCTAAAGGAACTCGAATGGACTCCTCCAACTACAACCCTCAGCCTTTCTGGAACGCAGGCTGCCAGATGGTGGCACTAAACTACCAGACTTTGGATTTCCCTATGCAGCTGAATCTGGCTATGTTTGAGTATAACGGGAGGACGGGGTATCTTCTCAAACACGACCTGCTGCGGAGAAACGACAAGAAGTTTGACCCCTTCTCAGACAGGATCGACACCATTGTGGCCAATACTCTCACAATTAAGATCTACTCAGGTCAGTTTCTGGctgataaaaatgtaaaaacgcTGGTGGAGGTGGAGATCATCGGCTTGCCTGGAGACCCAAAGCGCAAATACCGCACAAAGCCGTCCCCGGTGCCCAACGCCATCAACCCTGTGTGGAACGAGGAGCCGTTTGTGTTTGAGAAGAttctgtgcccagatatggccTCTCTCAGGATAGTGGCTTTTGAGGAAGGAGGGAAATTCATTGGTCACAGAATCATCCCTATAGATGCCATTCAGTCAGGATTTCATCATATTTGTTTGAGGAGTGAGTGTAACATCCCTCTAACTATGCCTGCGTTATTCGTCTACATCGAGGTGAAGGACTACATCCCTGCTGCCTTCGCTGATTTCACAGATGCTCTCTTTAATCCAGTCAAATCCACAAAGCCGGCGAAACAGGAGAGCGCTACTTACGTCAGCCCGTATGAGCTTCCTCCTGTTCCAGCAGATGTTTCTGCACCTGCTCCTGCTGCAGAACCTGATGTGTCCAAGATTCCAGCAGAGGGTGCTGCTGATCCTCCTAAAGAAAACGGATCATCTCCTCCAGACTCCACTGATACAGATCCCCCCTCATCCACTCCAGAGCCCACTGACCCAGAAAATCAGAATACAGCCGACCAGAAACCAGAGGCCCCTGAGCTCCAGCCTAACGCTGAGAATCCTCCTGCAGAAACACCTGCAGCTCCTGTAGAGCCAGATCCACCTGCAGAGACCAGCAGTGCTCCAGAGGATGAGCCCACTGTGGAGGAACCAGAGGTAAAACCAGACCCTCCTCCAGTCTCAGACTCAACTCCTGACACGACTCCAGACTCTGAACTAAACTCCACAGAGCAGCAGGACTCTGGACTGGAATCTGCATCCGCAACTGATTCTGGATCAGCTACAGAAGCTGAAGAGCTTCCTGATGCTTCCACAGTCTGTGACGGTTcagagcctccgtCCTCCGTCACCTGTGCGGAGCTGCAGGAGCACAAGAGCTTCGTGAAGGTGACCAagaggcaagagagagagatgaaggagCTGGAGAAGAAGTTCCAGAAGAAAGCAGAGGAGCTGAGTCAGAAATACAGTGACCTCTTCAAATCCATCAAGAAGAAGACCTCGCTCAAGAAGAAAGAGACAGGAGCTGAGAAGGCAGACGCAGGACCCAGTGCTGAGCGGGTCACTGACCTTAAACAGAAGATGCAGGCGGAGCTGAGGGCGCTGTGGGTGGAGCAATACGATCAGCtgaggaagaagaaggagcAGCACGCCACCGAGCGAGTGACCAAGCTGCTGGAGATGGCCACAGAAAGACACTGTAGTGAAACGAAGGCACTAACCAGtgaaagtaaagaaggaaagaagaagGAATCGAAGTGCAAGCTGAAAAAGGGAATGAGCTGCGAACAGCTAGACGAGGAAAACAACACTGAGGTAAGACATGCTGACAGAGCCAAGAAAGTGAATGGACTGCACCAGGAGGCCATGTCAGATCACGCTAAGAGGATGTGGTCTCTGCCCTGTGACCTGCGGGAGGCGGTGAACGCCTGCGTCAGTCCTCACTTCCCTGATCAGGTGGAGAAAGGTGCGGAGAGGAGAGCGGAGCACAGCGCTCAGGGGGGACACTACGGACACGTGTTCCTCGGCTGATAGCAGCTCTGATTCCTCTACTTCCTCTATTAAAACACTTCTCTAAACGTAAGACTCGCGTGCCTTAAAACAGAAGACACTGATATGTTTTGTGATTCAGTCAAGCgcaatataatatacagcactCTACACTATTGTGTCATATTgtatatttgcatttaaaaatatatatgttaaggAGAAAATATCATTGCAATTTCCTTTTGGATGCAACTATTTTGTTCAAAATGAGCGTATTTATTAAATAGTAATCCtcagtgtgtaatacatttatgtaaccaaaaatgattattttttggtAACTCTCAAAAAACCCTTTGCAACAcctttcttttttaagaatttactGAATTTGATGCGTTTCTGAAGCTGGTGAGGCAGATTGTGGTCAGAACGAGACTCTGCAGGAGAAACTGGGCATGCTGACGGTAAACTGGCACACTGGAGAGCTGCAGTGTAGGTGGTTCTAATATATTTGCCAGTGAGAGTAGTGTGGTGGTCTTCATTTCTGTAAATATATCTTACTAATGAataatactgaattatttacattctgtaAAAAGAAcacctgattttgctatttataggtttatgtttgggtaaaatta

Function

symbol description
plcb2 Is expressed in digestive system; oral cavity; and taste bud. Used to study congenital heart disease. Orthologous to human PLCB2 (phospholipase C beta 2).

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672450.1 True 4387 mRNA 0.49 31 1581756 1617335

Neighbor

gene id symbol gene type direction distance location
mthfd1 mthfd1,LOC108269612 coding upstream 67026 1498122 ~ 1514730 (+)
LOC103037734 LOC105015678,LOC106588052 coding upstream 102098 1470015 ~ 1479658 (+)
gcfc2 gcfc2 coding upstream 252668 1319419 ~ 1329088 (+)
LOC107197738 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 coding upstream 263638 1304067 ~ 1318118 (+)
LOC103043042 LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766 coding upstream 378614 1187120 ~ 1203142 (+)
ankrd63 NA coding downstream 27733 1645068 ~ 1647692 (+)
spint1 NA coding downstream 117286 1734621 ~ 1752108 (+)
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding downstream 188612 1805947 ~ 1831095 (+)
LOC107197725 LOC108430641,LOC108269631 coding downstream 219454 1836789 ~ 1854878 (+)
dnajc17 dnajc17 coding downstream 470278 2087613 ~ 2146276 (+)
G77396 NA non-coding upstream 61761 1517762 ~ 1519995 (+)
G77413 NA non-coding upstream 87321 1494160 ~ 1494435 (+)
G77411 NA non-coding upstream 95435 1485833 ~ 1486321 (+)
G77408 NA non-coding upstream 98481 1480821 ~ 1483275 (+)
G77403 NA non-coding upstream 116486 1464906 ~ 1465270 (+)
G77457 NA non-coding downstream 36677 1654012 ~ 1655515 (+)
G77464 NA non-coding downstream 77829 1695164 ~ 1756066 (+)
G77484 NA non-coding downstream 139829 1757164 ~ 1771913 (+)
G77493 NA non-coding downstream 249760 1867095 ~ 1869007 (+)
G77510 NA non-coding downstream 409355 2026690 ~ 2030616 (+)
c9h15orf52 NA other upstream 18576 1528970 ~ 1563180 (+)
G77410 NA other upstream 96706 1484670 ~ 1485050 (+)
G77212 NA other upstream 572914 1005129 ~ 1008842 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 646078 883297 ~ 935678 (+)
G77154 NA other upstream 949384 631714 ~ 632372 (+)
G77471 bub1b other downstream 76021 1693356 ~ 1696981 (+)
zfyve19 zfyve19 other downstream 80630 1697965 ~ 1708297 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 295197 1912532 ~ 2009418 (+)
LOC103031026 NA other downstream 841110 2458445 ~ 2464321 (+)
G77722 NA other downstream 1282799 2900134 ~ 2978094 (+)

Expression


Co-expression Network