LOC103033947 (LOC107560184,LOC107678711,LOC107726575)


Basic Information

Item Value
gene id LOC103033947
gene name LOC107560184,LOC107678711,LOC107726575
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1805947 ~ 1831095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672455.1
atgtTGGGACACATATATTGGGTTTATACTAAaaattctgttgtttttttttctgtttcacaGGACTACTTGGCTTATATCATAGATGCGAGAGACTTGCCCATTAAACCCGAGCAGGTTTGCTCCTTGTTTGGCAACATTGAAGTCATCTATGAATTTAACAGTGAGCTTTTGCAGTCTTTGGAACTGTGTGACAGTGATCCCGTGGCCATCGCCTGTTGCTTTGTGGATAAGAGCGAGTACTTCAACATCTACACCCAGTACTGCACAAACTACCCTAACTCAGTGGCGACTCTCACAGAGTGCATGAGGAACAAAACGCTGGCTAAGTTCTTCCGGGATCGGCAGGCGTCTCTGGAGCGCTCTCTTCCTCTCGGTGCTTACCTGCTGAAACCTGTGCAGAGGATCCTGAAGTACCACCTCCTGTTACAGGAGATTGCCAAACATTTTGACCCTGAGGAGGACGGTTACGATGTGGTGGAGGAGGCTATTGACACCATGACGGGCGTGGCCTGGTACATCAACGACATGAAGAGGAAGCATGAGCATGCAGTGAGGCAGCAGGAGATCCAGTCTCTCCTTATCAACTGGAAAGGTCCTGATCTTACCACATACGGTGAGCTGGTCCTGGAGGGAACCTTCCATGTTCAGCGGGCGAAGAACGAGAGAACACTCTTCCTCTTCGACAAGATGCTCCTCATCACCAAGAAGAGAGGAGAGCATTATGTGTACAAGACCCATATTACGtgctcCACTTTAATGCTGATAGAAAGTGCCAAGGACCTGCTTCGCTTCAGTGTTACTCACTACAAGCATCCCAAACAACCTCACACAGTGCAGGCCAAAACAGTGGAGGAGAAGAAGCTGTGGGCTCATCATATAAAGCGACTGATTCTGGAGAACCATCATGCCGTCATACCGCAAACAGCCAAAAATGCCATTTTGGATATGAACTCTCCTGGTCCAGCGAAATACCGCTACAGTCCAGAGAGACTGAAGAAGCCCATGTCTGCTTACAAAGAGGACTTTCCTGCTGGAGGACGAAAGGGACGAAGGAGATCAGAGCCGATGAAGCAGACTGTGAGAACTACAAGAGGAAGTCTCAAGCATGCAGAAAGCGAAGGAACTTTACTGGGAGACAGCAGTCGGCACCTCCTGCAGCCTGCATCAAGCGTCTCCACCCTAAACTCCACCACGGACGAGCCGGAGACTGAGGGACCGGCTCTAGAGGACAGAAGATCCGAGTGGCTTCAGCTTCGCACCAACTCTCTGGATCGCCTGAGTACTCCGACTCTACAATCCTGCCGACTAGAGATGCCTTtcgagagagagaaggaggtggaggtggaggaagaGCAGGGTGGGAGTGgcgaggaggaggaagaggaggaggaggaagttCTGGTGAAGGACGAGCAGGTAGCTGACTTTGCCAGCTCAGTGCTGGCCGCCATCTCCTGCTGGCACTATAGAGCCAAGGCTTTGCTTTTCACTCGGGTCCCAACGGATGTAGAAGAGGCTAGTCAGGATAATGGAGAAGAGACTGAGAGAAGCCAAACTCCTTCTGAAGACCAAGCCGAGGCATCAGCACTGTATGAAAAGGACCCTTGTGGGGATCAGGGCACACTGAGCAGCTCTCCGTCTAGTGGAGGCCAGGAGGAGTCAAGAGGACGACAACCTCCGAGTCACCCTGAGACGATGTCTCAGCATGGAGACGGAGAGCGGGAAGAGACGAATGCGGAGAGCAGTGTGGACTCGGTGTCTCCCATACGGAATGAGAGCCAGCTAGACCTTACTGAGGAAGACGTGGAAGACCCTGAGGTTGTtgaagatgaggaggaggaggaagaagaagaagaagaagaggatgaaGAAAATACATCACAAAATGAACCTGCAAGTCTCCTGCCCACATCCGTGCTGAACAAGGCCAGTGATATAGCTGAGCGCTTTATCAGCAGCCTGTCTCGTAGAGGTAGTCTGGTAGTGGACGACTTTTACTCTCAAGGCTGCGACTCTGAATCTAAAACAGGAAGTAGAAGGAGCAGTCTGCTCAGCTTGAATGCTGACATGTTGGAAAAAGAGATCATCACACAAGAACTGAGCGAGAAATGCTTATCTGAACCTTTAACTATCAATTCAATCGCAGATACCGATGGACACCCTGTCCAAATACCAGACCAAAGACCACCACAGAAGCAGGACACTCTTTCCAAAAAGGACAGGATGCTGATCCACAAGATCAAGCAGTACTATGAGCATGCTGAGCACCAGGACGCCAGCTTCAGCATCAGGCGCAGAGAGAGCCTGTCCTACATCCCCGCAGGGCTGGTGCGCAATTTGAGTCGACAGCTTAATTGCCTCCCGGACGATAAATCTCTACTTCCTGCCGACGTTCAGAGGAAGGCTTCCTCGGCTTCCTCGAGGCCAGCTTCCTGGGAAGTTTTTGATCTTCCTGGTGTATCcaggaaagaagaaaaagaaaccgacataaacactgtaaacactgtaaGGAGCAAAGATGAAGAAGTAAGATCTTCAATAGAGAGTAAAGACGAGTGCTTTAGACCCTCAGCTGAGATGATCAGCGTTTGGAACGACATGGAACTAGACGTTTTTGAAAATGCTGTTTCTAAAACAAATCAGGATGGCCATTGTGAATTGGCCAGTCCAAACcagaaaaagctaaaaaaaagtggCGAATGTACTGAAGCCCTGCTTATACTCGAGGATTCAGATAACAGCATGGCTGAACAAGAACAAGTGCCTTCCACTCTTTCTTTAGATGGCAACTATTCAGACTCTAAAGACCATGAGCTGAAGATGAGCCCAAACAGTCCTCACAAGCTCCAGGAGCGACGCAGGGTCAGACACGCTCCTCTACCCAAGATCATCTCCCTGAGGTCGGGCTCAGACGAAGACCTGATCCTGCAGGATATGGAGAAGATGAAGAACAAGGTCTTCCAGCTGGCTCGGCAGTACAGCCAGCGTATAAAGAACAGTAGACCCGTAGTGAGGCCCAGAGCCAGGGTGCAGGATTACCAGTTCACCCGCAAGAACCTGCCCTCTGTTATAGAAGACAAATCTCCAGAGCCTGAGAGGGGTGgTGCGCACAACTTCATACTGTCACATGCATCATGTGAGCCTATCGACCTGAGAGCCTCCAGTCCGTCTTCCAGCTCCTCCTCCGTGGGCAGTCCTCGAGTGCAGTCCCCCAGCAGAGGACCGGCTCTGGGTCCACAGAGTCCGGTCTACACGGAGAGCTTCCATTGGCCGGATGTACGAGAACTGCGCTCCAAGTATTCCCGCCACGGCGCCAGCCTCTCCCGATCAGCCGGAGCTGCTCTGTTCCAGAACGGATGCTCGAGGCGGCACATGGTCATTCCCAATCCCAATCCCATTCCCAATCCCAGCGTAGCTGCTCCTGTTCCACCCCGGTTTATGAAAGCGTAGTGGAGAACACAACACAAACTAAAGCCACAAGCAGTTCCTGCTGCCGGGAGTGCCAGGAACCTGCAGAACCAAAAAGTGCGGCTAAATTGTGTAAAGCGACTT

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family G member 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672455.1 True 3555 mRNA 0.51 16 1805947 1831095

Neighbor

gene id symbol gene type direction distance location
spint1 NA coding upstream 53839 1734621 ~ 1752108 (+)
ankrd63 NA coding upstream 158255 1645068 ~ 1647692 (+)
plcb2 plcb2 coding upstream 188612 1581756 ~ 1617335 (+)
mthfd1 mthfd1,LOC108269612 coding upstream 291217 1498122 ~ 1514730 (+)
LOC103037734 LOC105015678,LOC106588052 coding upstream 326289 1470015 ~ 1479658 (+)
LOC107197725 LOC108430641,LOC108269631 coding downstream 5694 1836789 ~ 1854878 (+)
dnajc17 dnajc17 coding downstream 256518 2087613 ~ 2146276 (+)
fsip1 NA coding downstream 415956 2247051 ~ 2312662 (+)
LOC103026471 LOC100304858 coding downstream 634215 2465310 ~ 2468562 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding downstream 640303 2471398 ~ 2474791 (+)
G77484 NA non-coding upstream 34034 1757164 ~ 1771913 (+)
G77464 NA non-coding upstream 49881 1695164 ~ 1756066 (+)
G77457 NA non-coding upstream 150432 1654012 ~ 1655515 (+)
G77447 NA non-coding upstream 187620 1578277 ~ 1618327 (+)
G77396 NA non-coding upstream 285952 1517762 ~ 1519995 (+)
G77493 NA non-coding downstream 36000 1867095 ~ 1869007 (+)
G77510 NA non-coding downstream 195595 2026690 ~ 2030616 (+)
LOC103031311 inf2,LOC107678755 non-coding downstream 230018 2061113 ~ 2066854 (+)
G77531 NA non-coding downstream 353774 2184869 ~ 2185952 (+)
G77532 NA non-coding downstream 359227 2190322 ~ 2190664 (+)
zfyve19 zfyve19 other upstream 97650 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 108966 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 242767 1528970 ~ 1563180 (+)
G77410 NA other upstream 320897 1484670 ~ 1485050 (+)
G77212 NA other upstream 797105 1005129 ~ 1008842 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 81437 1912532 ~ 2009418 (+)
LOC103031026 NA other downstream 627350 2458445 ~ 2464321 (+)
G77722 NA other downstream 1069039 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 1490990 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 1934685 3765780 ~ 3824872 (+)

Expression


Co-expression Network