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Basic Information

Item Value
gene id begain
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4574276 ~ 4590198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672463.1
ATGGTCCACTTCTACATGCATTCAGTCTTCGACAGCGTAACGTCTAGgccacaaaaaatgcattctggAGCGTCGAAAACAGGCCAAGGTGTCACTGCGAATGGATCCGTCTCCACACTGCAGAGACAGCAATGGTCcaaaacagcattaaacagGCAAGAACGAAATTCCTGTTCTTCTACCGCTTCACGTCCTGTGTTCTCAGTACGACAGACTGATCAAGAGGAGGACACGCCACCATTCCGTCCATCCAGCCGTTCTTCTCCAACCTTACCGGGTTCTTCTACAAGCCAGCATGGATCTCACTCAAGTCACAGTAACTCAAAGGTTAGCCTCAAGAGCTCAACATCAACTCTACAGGGCTCACTGCCCAGTTTACAAGGCTCAGTAAGGAACCTAAAAAGCTTCTCGGCTGCGTCCGCTTCACTCCAAAGCTCCAACCATAGCCTGCCCAGCTCCACAACCAGTTTCCGCAGTTCTAGCACCAGTTTTAAAAGCTCCAGCTCCAGTCTACAGAGTGGCAGCTCCAGCGACAACGACAGCTGGGGCACCAACAGTTGGAGCTCAGGAGCCACCTGTCTGCTGCGAAGCTCCATCAAGCAGCACAGTGAAGAGGTCTTCAGGGTCCGTGCCAGCTCGATTAACAAACCTGAACCAGTTAGTGATTCTGAGTCTGGATTTCAGAACTTAGAGAGCTGCCAGGGTAAAGAAAGGCAGCAAGAGAGTCAGCAAACTGCAGAGATAGCAACTCTCGGTCGCAAAGACTCTGTGCAGAGTCAGAACTCAAGTCACTGCAGCACTGTTCCCTCAACTGCATCAGAAAACATCGAGAGGAAGATTGAGGACAGGCTCAAATTTTCTCAGTTTCTGGATGAAGTAACTTGCAGGGTACTAGGTCCCGAGAGCCTACAGGCCTTTGGTGCTGTACGCAAGAAGGACCCACTTAGTGCCAGTGCACAGACCTTACTGGTCAGTTGTTCCCATTCGTTTCCAGTCTCTTGTCAACACGAAGTGTTCCCAGTGCATGAGAATCCCTGGTTCGATTCAAATGGAAACCCCACACCCCAAAGTAAGGAGCCCAAAAACCCTAACCCTGAAGGCTTTGTCTACCAATGGAACAAGTACATTCCAACCTGCAAGATTCTGGACCCAACTGAAGTCCTGAAGAAAGACAACGAGGAAACTTTTTCGATAGAAACTGCAGGGCGAACGTATTTAGAGACAGACATGGACAGCTTGGTTTTGCCCCTTTTGGATTGGCTTACTCACATGTGTGGTTCTCTGAGACGCCTGGAGGAGTTGTTAGTCCACATGACAGGTGCTGAACCAACAGGAGTGTTCAGCACCCTGGAGAGCACCGCCCGAAAGGAAGGACTCGGAAAAGTTATCTTGCATGTCACAGTTCCCCCCTCACAGACCTCCCTGGGGGGCCCAGAGCATCCCTCTCAGCCTGTGGTCTTCGATACAGAGCATCACGTTGGCATTCTGCAGGCTGAACTGATGTTGCACCTGGAAATAGAAGAAAAAGCGGAGCCTGGCAGAGGAAGAAACCAGCCAGGAGCCGCATACCTGCTCTCAGCGGGTGCAGCTTTTCCTCTGATGAAGACTGTGGGtcacctaaataaacaaacctgTTTATCCTTTTGTCTGCACAGTTATATGCAGGAACAGAAGGAGAACCTGCGGAAGAATCTGTCCCACACCACCCATAAACTAAAGATGCTGGAAAGTGAGTTTGATACAACTCGCCAGTACCTAGAGAAGGAGCTTCGACAAACCCAGGAGAAACTGGACAAATTCATTGACGAGTTGCAcagGATACAGAGCAGCTATGCAGCACTGCAGAGGATAAACCATGATCTGCAGGATAAGATTCACAAAAAGACTCAGTTATTCGAAGAGGAGAAAAGAGCATTGAGCCAAGAGATCATCGTACTCAATAACCATCTAATGGAAGCTAAACTCACTATTGAAAAGCTGAGAAAGGACAACGACCTGTACAGGAAGGACTGTCACCTTGCTGCTCAGCTCTTACGGTGTGGAAAATCCCAGCACAGAGCACACAAAGTGCCTGAGCAGCCCACTGACTTTCAGAGAGGAACAAGTCCTCAGATTAAGAAGCATGGGCATCCAAGGAGAACCGGCCTGGGTCTTACTCCCTACTCTGACACAGTGCCCACAGCTATCAATGCCAAGATACTGGAAAAGCCTGAGGCAGGTAGTAGCTTCTCAATTACAGCTGAAGAGCTTCTGACAAACAATGGAGGGGACACTGGAGACGCTCTCCATCGCAGCGTGGCCTACAAATCCTCTGACCTGTACTGCAGTGACACGGCACTTTACTGCCCCGTGATGGAAAGGCAGTACTGGAAGCGCCCACGAAGTGTGGACCTCCTTGGTAGGGACACCAACCAGGGCCTACTCCAAGCTGAGAACTCCACAGAGAGCATTCCAGATGTGAATACTTTCCAACCCAGCTTCTCTAACAGTGAACTTCCCTTGTATGAGTTTCCAATGGGGTCTCCTCCACCCCCCAGCTCCTACTCAAACTTTAGTGTGGCCTCGGATGAGAAGAGTCACACTCCCAGCAGCTCGCTATCCTCCTCCCAGCTGGCTTTATACATGGACTGGCAGGTTGGTGATTACGAGCAGAAGAACACACCTGCATATGATAAGAACAGCACTGGATTTCCTATGTTGCACAGTCTACAGCACATGTCTCCTAGCCTACAAAAAGCCAACACTCCAGTCTACATGAGAACAGCATCCTATGGTGAGCCATACCAGCAACCTCAGCTCACCTCCTCCCACAGCAAGGGCTCCACCAGTGTTCCAAGAGAGACCCACATGCACATAGCAGAGGACATAAACACCCGCCCCTATCACAGCCCGGGACGTGTTTCCCCTTATAGCTTTTTCCAACAGCGCTTTGATGCCGGCCCTGCTGATAAAAAACTGGGAAACCTTCACAGCAGCTTCCAGGGAGGAGATAACAtttttcacactcacactcacactcataacacagccaaaaaagtgaaaaaagaatACAGAGACATAAGCCCCAACAGCTCAGAGCCATTACACCAAAATTCTCCAGAGGCCTCCAAGGTGCAGCACTACCTGCCACACAGTCCAGACCCACAGAAGAAGACTcctccacacaaccaaacatTCCGAAGCATAGGACTCAGTAGAAAAGACAGTCTCAGTAAAGCTCAGCTGTATGGAACGCTGCTTAACTGAGTCatatattaatgatttaatagtGACTATCAGTAACTGTTCCCACTGACTGTTACAAAATGTGTTTGTGGACCTGAAAAACATGATGTGAACCaaacttttggcacaatgtAACGAGGATTTATGATGAATGATGTACagaaaagtgagaaagaaaagtctttgttttctgtgttgtgtgtaaaatagttttagtatttaaaaacaaagccAATTTAAATGTGAATTGCTATctaaagtaccaattagtcttatataatattcaaattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672463.1 True 3518 mRNA 0.48 7 4574276 4590198

Neighbor

gene id symbol gene type direction distance location
LOC103040906 ppp2r5c,LOC106937856 coding upstream 87369 4466364 ~ 4486907 (+)
LOC103042329 NA coding upstream 186771 4380307 ~ 4387505 (+)
mok mok coding upstream 209472 4354756 ~ 4364804 (+)
klhdc2 klhdc2 coding upstream 244771 4322554 ~ 4329505 (+)
dnaaf2 NA coding upstream 260488 4310317 ~ 4313788 (+)
wars wars,LOC107088074 coding downstream 11743 4601941 ~ 4609185 (+)
LOC103044998 LOC103044998 coding downstream 59956 4650154 ~ 4659702 (+)
kdm1a kdm1a coding downstream 589439 5179637 ~ 5202441 (+)
ptafr NA coding downstream 691816 5282014 ~ 5289766 (+)
pacrg pacrg,LOC107583491,LOC107695182,LOC107697704,LOC107590953 coding downstream 754938 5345136 ~ 5440734 (+)
G78172 NA non-coding upstream 83622 4477866 ~ 4490654 (+)
G78122 nemf,LOC102775640 non-coding upstream 220999 4351453 ~ 4353277 (+)
G78117 NA non-coding upstream 253949 4318054 ~ 4320327 (+)
LOC111193172 NA non-coding upstream 288045 4278111 ~ 4286231 (+)
G78066 NA non-coding upstream 414959 4158517 ~ 4159317 (+)
G78283 NA non-coding downstream 614884 5205082 ~ 5207413 (+)
G78282 NA non-coding downstream 702557 5292755 ~ 5294206 (+)
G78397 NA non-coding downstream 1967035 6557233 ~ 6563936 (+)
G78408 NA non-coding downstream 2034503 6624701 ~ 6627742 (+)
G78409 NA non-coding downstream 2083605 6673803 ~ 6674290 (+)
G78111 pole2 other upstream 276092 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 749404 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 1214532 3322085 ~ 3359744 (+)
G77722 NA other upstream 1596182 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 2109955 2458445 ~ 2464321 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 861917 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2267156 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3004509 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3066109 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 3939656 8529854 ~ 8549968 (+)

Expression


Co-expression Network