LOC103024072 (pabpc4,LOC107654874,LOC107716002)


Basic Information

Item Value
gene id LOC103024072
gene name pabpc4,LOC107654874,LOC107716002
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7766569 ~ 7799259 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672468.1
TCCCACGCGCTCTCTTTCCCCGGCCACCCAACCGTGAGTGTGTAACTCACTCCTCTTTAgttaccttaaaaaaataaaaaacatataaaaattacaaaatacagaaaatctTCATAAAAAAACCAACACCTCGCGgactaaaccaaaaaaaaggaaaaaaaacaacaacacatttttattttttaatttctaccaagcgttttattttctctctcaaaGTCAGAACAGGCCTCTGCGCGCTCCGGGACTAATTATTctaagttttttattattattattattattattattatttttattttttttcaggaccacctataattttttttattagctcgGAAACTTTACCACAGGTAACAGCAGCGGAGCCGGGCTAAACagctctatccctctctctctccctctgctacacgcacacactcactaacacacacacacacacactcagcccgGACCCTCGCGCTCCTCCGCCGCTCCGTTTTCAGCCGGACACCGAGGACCTCGCGCTATGAACGCGGCCGCCGCGGGGAGCTACCCGATGGCCTCGCTGTACGTGGGAGACCTCCACCCGGACATCACGGAGGCCATGCTGTACGAGAAGTTCAGTCCGGCCGGCCCCGTGCTCTCCATCCGCGTGTGCAGGGACATGATCACGCGCCGCTCGCTCGGCTACGCCTACGTCAACTTCCAGCAGCCGGCGGACGCTGAAAGAGCGCTGGACACCATGAACTTTGATGTGGTGAAGGGGAAGCCCATCAGGATCATGTGGTCACAGAGAGATCCATCTCTCCGGAAATCAGGAGTGGGAAATGTCTTCATTAAGAACCTGGACAAGTCCATCGACAACAAGGCCCTGTACGACACCTTCTCGGCCTTCGGAAACATCCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGATCAAAAGGCTACGCGTTCGTCCACTTCGAGACGCAGGACGCCGCTGACCGCGCCATCGAGAAGATGAACGGCATGCTCCTGAACGACCGCAAGGTGTTCGTCGGGAGGTTCAAGTccagaaaggagagagaggcagagctgGGCGCCAAAGCCAAAGAATTCACCAACGTCTACATCAAGAACTTTGGGGAGGACATGGACGACGAAAAGCTAAAAGAAATCTTCGATAAATACGGTAAAACTCTGAGCGTGAAGGTGATGACGGATCCCACAGGGAAGTCACGAGGCTTCGGTTTCGTCAGCTATGAGAAACACGAGGATGCCAACAAGGTGAAGAAGCGTGAGGGAAATCCTGTGAAATCACTTCTGCAGTCTGAGATTGTTTTTTGGACGTGTTTTTTGCAGGGTGTGAATTTGTACATTAAGAATCTGGACGACACTATTGACGATGAGAAGCTGCGTAAGGAATTCTCTCCGTTCGGCTCCATAACCAGCGCTAAGGTGATGCTGGAGGAAGGCCGCTCTAAGGGTTTCGGCTTCGTGTGCTTCTCCTCTCCGGAGGAGGCCACCAAGGCCGTGACGGAGATGAACGGGCGCATCGTGGGCTCCAAGCCTCTGTACGTGGCCCTGGCTCAGCGCAAGGAGGAGCGCAAAGCCCACCTCACCAACCAGTACATGCAGCGCATCGCCGGCATGAGGGCCATGCCCGCCAACGCCATCATCAACCAGTTCCAGCCCACCAGCGGATACTTCATGCCTGCTGTGCCACAAGCCCAGAACAGAACAACGTACTACGCCCCCAACCAGCTGGCTCAGATGCGGCCTAACCCTCGCTGGCAGCAGCAGGGGGGCCGAGGTCAGGGAGGTTTCCAGGGCATGCCCAACTCACTTCGCCAGCCGGGCCCACGTGCCAACATCCGCCACCTCGGACCCAGCGCGACTGCGCAAGGACCCCGCGGAATACCAGGTGCCCAGAGAGTGGGTGGAACAGGGCAGCCCATGGGTCCCCGCCCCGCCCTGGGCGTGACCACTCCCCGGGCTATGCCTCCATACAAATACGCCACCGCAGTGAGAAACACTCAGCCACAGGTGGTCCAGCCAATTGCCTTACAGCAGGCCCAGCCTGCGGTTCATGTCCAGGGTCAGGAGCCACTGACCGCCTCCATGCTGGCTGCAGCCCCTCCTCAGGAGCAGAAGCAGATGCTGGGTGAGCGTCTGTTCCCGCTGATCCAGGCCATGCACCCCAGCCTGGCAGGAAAGATCACAGGAATGCTGCTGGAGATCGATAACTCTGAGCTGCTGCACATGCTGGAATCCCACGAGTCCCTGCGCTCCAAGGTGGAGGAGGCCGTGGCCGTGCTTCAGGCTCACCAGGCTAAGAAAGACGCCACACAGAAAGTTGGTGTGAGCGCTCCCACTGCTGCTGCATCCTGATGAGCAAAGCCCAACAGCCAAACGgCTGCAGCAAAGGCTTGAGAAGAAAACACTACACTGGCCGGTGCATTTCACAACCagatactaatatatatatatatatatatatatatatatatatatatatata

Function

symbol description
pabpc4 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in eye; musculature system; solid lens vesicle; and somite. Orthologous to several human genes including PABPC4 (poly(A) binding protein cytoplasmic 4).

NR:

description
PREDICTED: polyadenylate-binding protein 4 isoform X1

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672468.1 True 2483 mRNA 0.54 13 7766569 7799259

Neighbor

gene id symbol gene type direction distance location
LOC103024901 NA coding upstream 1892 7759849 ~ 7764677 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 22107 7682841 ~ 7744462 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding upstream 322848 7410429 ~ 7443721 (+)
rab3gap2 rab3gap2,LOC107659254 coding upstream 454277 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 489466 7255113 ~ 7277103 (+)
ppie ppie coding downstream 2961 7802220 ~ 7808950 (+)
erich1 NA coding downstream 615948 8415207 ~ 8442555 (+)
LOC103031442 LOC103359616 coding downstream 670342 8469601 ~ 8507161 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 753189 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 824142 8623401 ~ 8634193 (+)
G78728 NA non-coding upstream 8369 7751414 ~ 7758200 (+)
G78725 NA non-coding upstream 18135 7747021 ~ 7748434 (+)
LOC103026041 NA non-coding upstream 137677 7626997 ~ 7628892 (+)
G78668 NA non-coding upstream 214201 7547456 ~ 7552368 (+)
G78646 NA non-coding upstream 376880 7389465 ~ 7389689 (+)
G78753 NA non-coding downstream 185322 7984581 ~ 7986723 (+)
G78760 NA non-coding downstream 195368 7994627 ~ 7996807 (+)
G78786 NA non-coding downstream 483681 8282940 ~ 8332434 (+)
G78792 NA non-coding downstream 556825 8356084 ~ 8356486 (+)
G78794 NA non-coding downstream 607901 8407160 ~ 8407552 (+)
fam167b LOC108433301,LOC101067225 other upstream 37568 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 158905 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 894164 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2236514 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3468385 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 730595 8529854 ~ 8549968 (+)
G78818 NA other downstream 736657 8535916 ~ 8537682 (+)
spata17 NA other downstream 1696190 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 2083747 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2738820 10538079 ~ 10556868 (+)

Expression


Co-expression Network