LOC111193128


Basic Information

Item Value
gene id LOC111193128
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10664458 ~ 10666674 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672473.1
ATGTTTCTCCAGCAAGAGATTAACTCTGATCGTCCGCGATCGAATGTTACTTACCGGGGGGCTAAAGACCACCCTTCCCGGCCCCCATTGGTGCGTTCTGGACCACCGGCACCAATGAAGAAACGTCCTCAGTATGTTCCCCAGACCCAGCAGACCTCCACTCCTGATCATCGCCTTAATTACAAGCCTCAGGCGGCTGTTCCTCTGGAGCAGAAGATTCAGTATGATCGAGAGTTTCTGCTGGGCTTTCGATTCATCAGTCCCAGCATACAGAAACCTCAGGGATTACCATTCATCCCTAGGGTTGTGCTGGACAAGCCCAATAAAGATCCATTGGACTCTAGTTACCAGCAGAAATGTGTACAACAGGACAGACAGACCTCCAGACATGGATGGAGACGAAGCACAGAGCCCGACAACGAGCTCCGCAACGAGACGCGTAAGGTCATCAGCGTGTCCCTGAATGACGACATCCAGCTCAACAAGGCAGCGAATGCCTGGAGGCCTGGAAGGAAGAAGAGCGTTGAATGCGGCGAAGTGCAAAAGGATGAAGCAGAAGACCTGAAGACTCAGGAGATGTTGAGATTGTTCCGCAGCATCCTCAACAAACTCACCCCTCAGACGTTGGAACAGGCTCAACAGCGCGTGACCGAGCTGGCCATCGATACGGAGGAGCGTCTGAGGGGGGTCATCAGTCTCGTGTTTGAAAAAGCCGTCAGAGAACCTCACTTCTCCGAGATATACGCAAAAATGTGCCACCGCCTCGTAGATCTAAAAGTCCCGACCTCTAAAGACCCGGCAGTTAACGTAGAGTTCAGATTACTGCTGCTCCGTTGCTGCAAGGAGGAATTTAAGAAGAACAAGGACGAGGAGATCATCGAGGAAAAGCAGAAGCAGCTGGATGCAGCTACAGAGAATGAAGAACGTCAGCAGTTAAAGGAAGAGCTGGAGGAGGCAAAGAACAAGGCCCGCCGTCGTTCTCTGGGAAACATAAAATTTGTTGGAGAGCTGTTTAAATTGAGGATGCTTAAGGACTCCATTATTCACCACTGCTTCGCCAAACTCCTGAAGGACGAAGCTGAAGAGAGCTTAGAGTGCCTCGGCAAGCTGCTCTCCACTGTCGGGAAAGACGCTGATGAAAAGGACAAGACTCGCATGGATCATTATTTTACTGAGATTGAGGAAATTGTAAGGGCGAGGAAGACGTCCTCACGAATCAGATTCATGCTGCAGGACCTTCTGGATCTGAGACGGAATAAGTGGGTCCCCAGGAGGGCTGATCTTGGCCCTAAAACAATAGATCAGATCCACAAAGAGGCTGCACTAGAGGAGAACGGCTCACAAAACAAGGTCCAGCAGCAGCTGAGATCTTATAAAGACTGGACCTGTGGACCGATCAACATCTGCCCATCCAAAACCATCAGCAAGATGGAAAAGATTGAGCTCAGGCCCACTGTACGCCAAGAAGAGGTTCCTGTGTCCAGTGACACCCTGGAGGACTCTGAAAAGACAATGAAGGAGACACCTAAGGAAACACCTGAAGAGGCGCCTAAAGAAATATTTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCTAAGGAAATATTTAAAGAGGGGCTTAAGGAAACACCTGAAGAGGCGCCCAAAGAAATATTTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCTATAGAAATATTTGAAGAGGTGCCTAAGGAAACACCTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCTATAGAAATATTTGAAGAGGTGCCTAAGGAAATACCTAAAGAGGCCCCTAAGGAAACACCTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCTATAGAAATATTTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCCAAAGAAATATTTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCCAAAGAAATATTTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGGCCTAA

Function

GO: NA

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672473.1 True 2034 mRNA 0.50 3 10664458 10666674

Neighbor

gene id symbol gene type direction distance location
LOC103027561 NA coding upstream 302413 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 327742 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 372165 10282665 ~ 10292293 (+)
LOC103026171 LOC108413038 coding upstream 411963 10242588 ~ 10252495 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 845013 9766166 ~ 9819445 (+)
LOC103024809 LOC107689792,LOC105902344 coding downstream 61174 10727848 ~ 10764714 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 910565 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 1143559 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1219562 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 1336119 12002793 ~ 12040710 (+)
G79399 NA non-coding upstream 12134 10651855 ~ 10652324 (+)
G79395 NA non-coding upstream 29446 10629959 ~ 10635012 (+)
G79381 NA non-coding upstream 106447 10477663 ~ 10558011 (+)
G79384 NA non-coding upstream 106954 10506337 ~ 10557504 (+)
G79379 LOC108430231,LOC107583545 non-coding upstream 195733 10452410 ~ 10468725 (+)
G79412 NA non-coding downstream 75816 10742490 ~ 10744266 (+)
G79417 NA non-coding downstream 110025 10776699 ~ 10777628 (+)
G79423 NA non-coding downstream 124008 10790682 ~ 10792779 (+)
G79424 NA non-coding downstream 150563 10817237 ~ 10818744 (+)
G79444 NA non-coding downstream 271824 10938498 ~ 10955362 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 107590 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 709420 9883006 ~ 9955038 (+)
spata17 NA other upstream 1109733 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 2114490 8529854 ~ 8549968 (+)
G78818 NA other upstream 2126776 8535916 ~ 8537682 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 134683 10801357 ~ 10814914 (+)
G79654 NA other downstream 888008 11554682 ~ 11555139 (+)
G79717 NA other downstream 1234421 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1398170 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 1556603 12223277 ~ 12279506 (+)

Expression


Co-expression Network