edrf1 (edrf1,LOC107729289)


Basic Information

Item Value
gene id edrf1
gene name edrf1,LOC107729289
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22627304 ~ 22637793 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672482.1
atGTGTACCACTAAAggGGTGGTTGAATGTCTTGGTAATAATGAAGTAAAGAGTCGTGCTGTGGTGAAATACTCTGCCGCACCACCTCCGGCCACCTATGCACTTCTTCAGGAGCAGACCGATCTCAAGTTGCCCCCGGCCAACTGGCTGCGAGAGAGTGCCCAGCTCGGCTCTGCTGGGACCACTGTACTTGGATCCAGCAGTAAAAGCAAGCCATTCTCTAGctttggTATGGCCTATGACTTCATTGACTCGATTGGGAATGATGTTGATGTGGTGTCtgattcagagAACATAAAAAAGTTGCTGAAGATCCCGTATAGTAAGTCTCATGTCAGCATGGCAGTTCATCGGGTGGGCAGGACTCTGCTGCTGGATGAGCTTGACATTCAAGAGCTCTTTATGCGGTCATCCCATacgggagactggacgtggTTAAAGGAGTTTTACCAGAGACTTATTGACCAGAAGTGGCAAAGGAAGAAGAAAAGTAAAGAGCATTGGTATGAAAAGGCCATCCTCTCCAAGTTTCTTTACTACAGTATACATGGAAATGATGTTGCCGAACCTGTGCCCTCAGACTCGGACAACTGTGCTGAGGAAGAAGAGGCTTGTGGAAGTGCTGAATATGGTCCGTCCTGGCCTGCACCCTTCAGCAGCCCTGCCTCTGAATCAGAGCAGTCCACTATTCCCAAAGAGgagcGAGTGGGGAACACGTATGCTCTTGGTCATGTGTCATCTGTTCCTAAAGAGCAGAACCTTCCCACACTTTTTAATGAAGGAGAGAATAGCCAGGGTTTAAGGAATGATTTTGTACGGAACATCCTCTGGACATTTGAGGACATCCATATGTTAGTGGGGTCCAATATGCCCATCTTTGGAGGAGGGCGCTACCCAGCAGTCAGTCTAAGACTCAGGGATAACAACAAACCAATCAACATCCTCACTGGGATTGATTACTGGTTGGACAATTTGATGTGCAATGTGCCAGAGCTTGTCATGTGTTTTCACGTGAATGGAATAGTACAGAAATATGAGATGATAAAGACAGAGGACATCCCTGATTTGGAAAATTCGACATTTTCCACTCGAGTTGTGAAGGACATTGCCCAGaatattctttcttttcttaagTCTAATTGTACCAAAGAGGGACACACCTATTGGCTCTTTAAGGCCAGTGGAAGTGACATTGTAAAGCTATATGACCTGACCACATTGTGTGAGGAAGCACCTGAAGAAAAATGCCAAAATCCCTTCACTCTGCCTGTGGCTGTGCTGCTGTATAAAGTGGCCAGCAATATGATGCTTAAAAAAGACCAAAACAGCAAGCATTATGGGACCATCAGAACTCTCCTACTCAACTGTATTAAACTATTGGATGAGGAAAAACACCCGCAAATCATAGCCTCTGCACACTACATGCTTTCCGAGCTTTTCCAGCTTGACGACTCGAGTGAGGAAGAGGGGAATGGGGAATCTCTTAGGAACGGAGGCTCAGAAGACAGTTACAGTGAGGATGACGATGAGagcgatgatgatgatgaagacgaGAGCTGCTCATACAGCCCCTCTTCTGAGTCTTTAAAGGATTGCAAGGCTGTGGCCATCATTAAGTCTGTGGGAGAGCTGTCCGTTCCCGAGAAGTACACGTCCACTCACAAGATCCGACCCAACTGTTCTTTTCCTGTGCCCCAAGACAAAGAAGAGAAGTGTAGGCTTGTCCTTTGCTACGTCCTAAAGGGCCTGAAGGCAGTGGATAGCAGCATAAAGAAGGAAAGTGATTTGCCAGCAGCTGACCCCAATACACCCATTCCTCTGAAATATGAGGAGAGTGGAGCCAGAGCAGTGGAGAAAGAGATTGCCCTTCTGCTTGACAGAGCTGCCCCTTGTGGTGAGGGCCTCAAGTTACCCATGCGCTCGGGCATGCTGCCTGGCTCCTGGCAACACCAGATGAAGCTGCAGCTTTTCCTAAAAGCCTCAAAAGCCTACTATGTACTGGCCGAGGCTGCCACCAACCTGTTGAAGTATGGCCGTGCCCTGCGGTACATCAAACTGGCCCTGCAGTGTCATGATGCATATTGTGCTATATGCAGTGGACTGTACCCACGTGTCTTGTTGTTCCACAGTCAGTGTTTGTCTCTGTGTGGAGACATACAGCTAATGCTGGCGCAGAATGCCTCAAACAGAGCTGCCTATCTGGAAGAGTACAGCTATCAGACCAGAGACGACCAGGAGATCCTTCATTGTCTGCACCGGGAGAGCTCCTGCCAAGGTCTCTCAGCTATAACTCTAATGCATTCCATCTTTAACAATGTACACATTGTCTGCACATTGTATTATAGTATCTtaggatgcactgaatattcagAGAccGCTGTAGATTACTATCAGAGGGCCATGAAATGCCTGGGCAGCAGAGAGAGCCATGAAGCAGTATGGGACTCTGTTAACTGGGAGCTTTCCACCACGTATTTCACCCTGGCCACATTACTGCAGGACTATGCTCCACTATCCCGAAAAGCTCAAGAACAGATCGAAAGGGAAGTGACGGATGCCATGATGAAATCTCTGCGATACTGTGACCTCCAGACAGAGTCTGCTCGTCAGCCGCTCTACCAGTACAGAGCAGCTACCATTCACCACAGACTTGCCTCCATGTACCACAGCTGCTACCGTAACCAGGTGGGTGATGAGAGTTTACGGAAGCAGCATAGGTCTCTAGCAGAGCTCCATTACTCCAAAGCTGTCCGGTTGTTTCTCAGTCTGAGTGACGCACCATGTGAGCTTCTTCGCACGCTGCTTGAGAGAGTAGCCTTTGCTGAGTTTACCATGGCAGggCAGAGTAGTAGTGCTGTGAAATTAAAAACCCTAACAGGTGCTTTAGAGATCATGAATGAAACACGCCATGCCTTCAGGTTAATCCATAAGGAGCTACAGGAGCAAGAGCAGAAAGAGGCAGTCGCAATAGAAGACACAGACAATCCTGATGAAGCCGGTGAGGGGTGTGATAGCTCTGCCTCCTCAGGCATGAACACACAGGAGGTGCTGAAGCTGATTGGTGTCTTTGAGCCCAGTttctccttcctgctcctgcaGCTGGTCAAACTCAGTGCCACAAGTAAACGGAAACCCAGTGCTAAAGAAGAGGAGCAGGTGAAGGTGTACAAGCAGGTGTATTCTCGACTCTTGCGAGCGGAAAAGAACACCTCCCTGATCGAGCGGATTGCCCTCTATTTGGAACTTCTGGATCAGCTCACCCCACCAGCAGAAAGCGAAGAACCAGGACCATCAATGTGAATTGTACATTTGTGCAAATTTCCGAACTGACTGGTGCTACCCTCCCTGTAACTCATTCAGGCTGCGTGCTGAAAGAACGAGGAGCCTTATGGAATGGGCCTTATTCATTCAAACCTGAAAATGTGAATACATATCATAACAAGCAGTGCCTTGTCCTCTCACTCACAACATCTTCATCCAGACATTGTGacacattacttttttttttaaccattagcaacagaaaatacattttgttcaaaatattctatatttaaaaaaatgtatagtaaatattttctaaaattttcaaataaaccaacaaaactacctgttttttgtttttggtgggGTGAGAGAAAGGGCACTTGACCGATTTAGTGGTGTACAACTAAGGTCACATTGGTTGATTTAGCTAAAAGCTCACAGtctttaaacataaataaacaataaatatgtgCAATATTAAGGCAGTGTTCAGGGTTATGCTCTGTTTAAAGGAAGGATTCACTGAAAAgtcatttttatacaatttgTGTTTGGGGgacttttgttatttttgatcATGGAAAGAACTGAGTACATTTGATTATTCTGGTAAACAGTTCCTTTAGAGGCTTGTACAGCTTGCAGTGTTtttgtatgagtgtgtttgCTGACTTgttaagattattaaaaaaaatggacattattttaaaa

Function

symbol description
edrf1 Predicted to be involved in positive regulation of transcription, DNA-templated. Orthologous to human EDRF1 (erythroid differentiation regulatory factor 1).

NR:

description
erythroid differentiation-related factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672482.1 True 3978 mRNA 0.46 24 22627304 22637793

Neighbor

gene id symbol gene type direction distance location
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 32947 22591569 ~ 22594357 (+)
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding upstream 492007 22130946 ~ 22135297 (+)
LOC103041179 NA coding upstream 499163 22111114 ~ 22128141 (+)
ubr1 ubr1 coding upstream 523653 22081687 ~ 22103651 (+)
exd2 exd2 coding upstream 571893 22047614 ~ 22055411 (+)
tonsl tonsl coding downstream 940 22638733 ~ 22663127 (+)
LOC103036290 psmc1,LOC108443803 coding downstream 48938 22686731 ~ 22692160 (+)
akap6 akap6 coding downstream 73289 22711082 ~ 22844378 (+)
npas3 npas3 coding downstream 220051 22857844 ~ 23154585 (+)
srp54 srp54,LOC107729255,LOC107693187,LOC107733904 coding downstream 604378 23242171 ~ 23248849 (+)
G82515 NA non-coding upstream 75515 22549865 ~ 22551789 (+)
LOC111193141 NA non-coding upstream 218269 22393995 ~ 22409035 (+)
G82493 NA non-coding upstream 258348 22366240 ~ 22368956 (+)
G82487 NA non-coding upstream 271218 22355641 ~ 22356086 (+)
G82476 NA non-coding upstream 341963 22285063 ~ 22285341 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding downstream 490160 23127953 ~ 23194290 (+)
G82583 NA non-coding downstream 526220 23164013 ~ 23165063 (+)
G82588 NA non-coding downstream 567022 23204815 ~ 23205444 (+)
G82596 NA non-coding downstream 570702 23208495 ~ 23208799 (+)
G82606 NA non-coding downstream 587972 23225765 ~ 23226910 (+)
G82488 NA other upstream 269169 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 953866 21520907 ~ 21673438 (+)
G81763 NA other upstream 2953666 19673127 ~ 19673638 (+)
G81761 NA other upstream 2961257 19665736 ~ 19666047 (+)
G81704 NA other upstream 3696550 18930238 ~ 18930754 (+)
G82609 baz1a other downstream 592637 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1237646 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1271889 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 1501596 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 2258101 24895894 ~ 24924815 (+)

Expression


Co-expression Network