LOC103046279


Basic Information

Item Value
gene id LOC103046279
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24814910 ~ 24826100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672484.1
GACTCTTCAGAAACTCTGTGGGTAAAGACCTGAGGTGTTTTTGGAGGTATAGAAAATGGCTTGTGTCTCAGGTTTTGTTTCCTTGAATGATCGTAGTGTTTTTAGCAAAGCTTGGCAGACTCGGGATCGAGAGAGACTTCAGACCATCATTGATCAGTGGAACTCTGAGAGACTGGACCTGTTCGAGATCAGTCAACCTGATGAGGACCTGAATTTTCATGGGGTTATGCGATTTTACCTTCAGGACCACATCACAGGGAACTTCTCAACCAAATGCATTCGTGTCTCCAGCACTTCTACCACACAGGAGATTATTGCCACTCTGCTTGAGAAATTCAAGCTTGATATCAAAGCTGAAGCTGATCCATATTTTATGTATGAGGTCTCTGGAGATAAAGAAGGAAGACGATTGGATCTTCATGAACAGCCCTTGATGGTTCAGCTTAGCTGGAATAAAGATACTATTGAAGGCCGCTTCATATTGAAAAATGATGGTAACACAAATTTGCAGGTGAGTTATCTGCCTATAAAAAGGAATATTAATCTGTTTTCCTTTTCTAAAGTGTTGCAAATAAATACCTCAAATAATGACGTAGATGGCAAAGAAAAAGTGGGAGTGCTACAAAACTTCAAGAGGACCCTGtcaaaaaagcataaaacaaataaacagaagaaaaaagagaatctCGACAGCCATTGCATAGAGACAGGGGATCTGCCTAGTGATGGCATTAATTGCAAGAACAGTCATGAACAAGAGAAAAGAACGTTGGTTGATGATCTTAAGGCGGGGATGAATCCAGCAGATCCGGAATGTTTTGAACTGAGGAATGAGGAAATTAAGTCAGaacacagcaaccGAAAGCCATCAAGCAGCCCAGTCAGACCAGCTGGCAAAGTGGTCTGTAGTGAGCAATCCAACAAGAGAAGATTGTTAGAGTACATTACTCAAAAGCAGGAGCAGACTTCTGAGTCTTGGAATGGCTCAAATGGAAGCACTGTACCAGAAAACTCTGTGCCAAAATGGAATCTACCACTAAGCATAAAGCTGGGAGAAAAAAAAGAAGAAGCCTTCTTGCTTGCTGTAGTGAACTACACCAACAGCTCCACGGTTCACTTTAAGCTCTCTCCGGCCTATGCCTTTTATTTGGCATGCCGATTTGTGCTCACTCAAAGTGAGGAGAGGAACAAAAATCCTAAAAAGACAGCACAGAGAATTTCTACCATTGTTAACAAGATTGTGCGTCTGATGGACAATGTTATTCAGaaacagagAAGCATTACTGTGGCTCTTACATTCTGGATGGCTAATGCCTCCGAGTTCCTGAACTTCATCAGGCAGGACAGTGATCTGGCCAACATCACCATCAGCTCTCAGAATGCTCTGGGTCAACTGGTTCGAAAGGCTTTCAAGTACCTTTCAAATCGTCTCCTGGCTGACCTTGAGAGTCATCTGCCTGGATTTGTCACTGATGCTGGAGATCAGACAACCCAGGCAGGGATAGACAGTGTGTTGGCCAGTTTCTCCAGGGCTATGACTTTATTGCGCAGATTTCGGGTCAACCCTGCTCTCAGCATCCAGCTCTTTTCTCAGCTCTTCCATTTTATGGGGGCATGGCTCCTGAACAGACTCACTGTAGCTGCCTCAGGCTCCAATCTGTGCTCACACTACTGGGGCATGACCTTGCGCCAGCGGCTAAATCACGTGGAGGCCTGGGCAGAGAGACAGGGACTGGAGCTGGCTGCTGACTGCCACCTGAGCCGCATTATTCAGGCGACAACTCTGTTGACCCTGAACAGCTATGGTGTTAAAAATGCTGAGAAAGTTCATTCTGTTTGCTTCAAGCTGAACTCATTGCAGCTGCGGGCATTAATGACCAAGTATCAATATGCACCCAAGCAACCTCACATTCCACatGATCTGATAGAGAGTGTGGTGGCAATGGCAGAGAGTGAAGAAaaggatgtgctggagaaagaAGGCACAGAGATTAAAATAGAGGAAGACCTACAGCTTCACTTGCCTTTTCTGCTGCCTGAGGAGGGCTATTCATGTGAGATTCTGCAAGGTGTTCCACAGGGCTTTAGAGAGTTTCTAGAGCCAATCTGCCAGAAAGGACTTTGTACACTAATCCCTCACCAGCTTTCTCTTGGGTCTTGGACTGtgcactttcagacctcagactTATCCCCTGGAAACAGGGTAAAATGTaaaCCAGCCATTGTGAAAATTACACTGAAGAAACCTTCGCAAAGTGGAATGGGCATAAGCATCGTAGCAGCTAAGGGAGCTGGACAAGAAAAGCTGGGAATCTTTATCAAATCTGTCGTCCGAGGGGGAGCAGCAGATGTGGATGGCAGACTGACTCCAGGGGATCAGTTGCTTAGTGTGCAGGGCAAAAGTCTTATTGGAATGTCACAAGAACGGGCTGCAGAGATAATGTTGTGCACTGGATCATCTGTAACTCTGGAGATTGCCAAGTTAGCAGCTGTTTACTATGGTCTGGAAGAGGTGTTGAACCAACCATCCCAATCAACATTTAGAGATGGTGATATTGCTGAACAAGCCACACAGCCATCCAGTGGCCTTGATATGAGTGAAATCTCAGGGCAGATTGTTTGTGCCCCTTCAACAATACCTAGCACAAAGGGGAGCTACCACACAGTCAAGAGACCAATCAGAAGGCAAGACCAGCAATGGCTTAAGCACAGACTGGAATATCGCTCAAACCCCAACTTGGCTTATCCTTTTCAAACGACCATGGAAATGTCTGTTGATTCATTCACACACAATCAGATATTCACCTCAGTCTCCACTGACAATCTTATTGCTGGTGGGCAGCCTGAATCTGGCCTTTCAACCCTAAGCCCTGGTCAGACTGGATCATACAGGGAATATTCAACCTTGCCAGTGTCTAGACTTCAGGCGAGTAAAGAGTCAAGAACTGCTGAACAGGCTCATCTCTTCTCTACTGTCTCCCACTGTCATGACCCCTCTGTGAAACTGGCACATTCTCAAGAAACCCTTCCATCTATGGATAAAGGAGGCCCCCTTGTGGACAGACCTCTGTATTTTGATTCATGGAGTGGCCAATCTGTGGATTCAAACTTTTCTGGACAAGAGAGAAGAAGCAAAGATGGACAGTGGGAGATTTCCGGTCATTCTTTGCATGTGTCACAACCAAAGCGGATAGATGTTCCTGTGTCTCATCCAACCAATGCTTTTCCATTTGGCATGTCCCAGCAGCCTGTTCTCAGAGCAGACACGACCAATACCAGCTTGTCATCTACAACTAACACATATGGCCAAGTCAGGAACCCACAGCGCACCTCTGCACCAGGTTGCTACCATTTGGAACAATACACAGGTTCAGCACTAGCATCCAAACAGCTTGTTCAGTCTCGCGTCTCACCTCAGAAACCTAAACTTGATAAGTTTTGTGAAAAACCTCAAGCTGTTGTATGTCAGTCTTTCTCTAAGTCTCATGACAAGAAAAGCAAGATAAGCTCCTCACAACTGAGTGACACTACAGAGCCACACAGTTACAAGCCTGTTATGAAAGGTGATGTGCAGGGCCTTTCCCCAGACATTTGGAAGCGGGAGGCTCAGGAGCAGTTGAAGAAGCAGCAAAGGCATCTGGCAGTGAATCTGCTGGGGCAAGAAATGTTGCAGCTGCAGGGTAAAATGGAACGGACCCTGGAGGAGAGTGAGCGTCTGCGAAGGCTCTCTCTTGAATGGCAGTTTCAGAAGAGGCTACAGGATTTTCAACAGAATGGAGAGGACAATGATGAGGAGGAAGATGGACACAACAGTGCTGTTATAATGCAGCAGCTTGAGCCACAGAGCAATGAGCAGCCTAATGCAGCAGATTTGTATAATGGACAACAGTTGAGTGAGCGACAGAATCAACTACCACTGCAACAGAAATGTCAACAGACTGAAGAGGACTGCCTCAAAGATGCAGGCCCTGGTGGTTCCTCTGAAACTAACAAGACTCAGcgtgtcagtgtttatttcgGCCAACTCAATCACAAGAACTTCAAGAATACAAAAGCTCCAGAAAATCTGACCTTCAGAGAACGACAACAGCTTTTCTCCTTGACCATGAATGAACCAAACAAGGTCAAAATATCATAAACATGCTCCTGTGTTCCACATTGCAGTGTTTGTGTTCTTAAATATATTCGTAAACGTTGATATCATAGTATGGCACAATAGTACTTGGCACagtgaacacttttttttatgtatactAATGATCTTAAATGTACACaagtcttttttaattttaaaatgaccCATTAAGTTTTGACAACGCTGtcttttaagtaaaaatatatatcatttgCGCAAAATGC

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672484.1 True 4359 mRNA 0.45 26 24814910 24826100

Neighbor

gene id symbol gene type direction distance location
LOC103033951 LOC108428726 coding upstream 1101 24807926 ~ 24813809 (+)
LOC103034484 LOC107576683 coding upstream 9525 24799032 ~ 24805385 (+)
LOC103032669 NA coding upstream 21579 24772806 ~ 24793331 (+)
fuca2 fuca2 coding upstream 43857 24765981 ~ 24771053 (+)
LOC103045971 NA coding upstream 67105 24742969 ~ 24747805 (+)
trnal-cag_10 NA coding downstream 1574 24827674 ~ 24827756 (+)
ptk2b LOC108428731,LOC108270138 coding downstream 23476 24849576 ~ 24882752 (+)
gckr gckr coding downstream 155276 24981376 ~ 24997874 (+)
LOC103039108 NA coding downstream 172235 24998335 ~ 25008777 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding downstream 219613 25045713 ~ 25071105 (+)
G83167 NA non-coding upstream 42117 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 172255 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 178028 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 179712 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 194973 24619695 ~ 24619937 (+)
G83180 NA non-coding downstream 12430 24838530 ~ 24840128 (+)
G83295 NA non-coding downstream 67143 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 105819 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 301860 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 535627 25361727 ~ 25367281 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 672678 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 840935 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 937140 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1583592 23230430 ~ 23231318 (+)
G82488 NA other upstream 2456775 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 69794 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 108064 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 203897 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 334818 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1093457 25919557 ~ 25975283 (+)

Expression


Co-expression Network