LOC111193134 (ltbp2)


Basic Information

Item Value
gene id LOC111193134
gene name ltbp2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28854283 ~ 28969028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672486.1
GGCGGCCATAGAGAAGCGCGAGCTCCATTCAAACTCTGCTCGAGGAGCTGCAGCAAGAGCACGAGCAGCAGAGCCcgacacacacgcactcacgcGCCTCCCATCAGCATGAGCCCGGCCGCGCGGACCCGTTAGCGCGCGCGCAACAGCGCAGTGACGAGACTTTCTGCAGACTTCACTGATTTACCCTGAGAACTATGAGCAGCAGAGCGCGCGGGATTTACAGCACGCGGGACAGTTGTGGTGTTtgttaaacctttattttttgcacGTGCGCGAATGTGTGACATCACAGTTTTACACTGAGCGTACACGCGCTGCTTTTAACGCACTTTTTATCGACGTTGTTTTTTACAAATCTGCACTGGACTGCACTTCTTGAGTTGAGTCTTCTCTggattatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcatggAGCGCCTGTTGTTTCTTCTCCTGCTGTCCCTCAgcctctcactgaccactgcgCTGGTCAGAACCCCCAGACAGCTGAGGACAGCGAGCAGAGGCCAGAGCAGTGTCAAACCAAGCCCACCTGACCAACAGGAGAGCAAAGCTACACACACCAGGAAGCTTGTGGGGCCACACGTGTGCGGGggtcagcagtgctgttcaggATGGGCTGTTGCACCTGGGACGAACCGTTGCATCAAACCGGATTGCCAGCCCCCCTGTCAGAACCGTGGCTCCTGCAGCCGTCCCCACACGTGCGTGTGCCGCTCTGGCTTCCAGGGAGCACGCTGCGAGGAGGTGGCCCCAGAACAAGTCTATATTCGCACCGGGACGTCCAGAGTGTTGACCCCCGTCCGACCTGGCAGCGAATCCTCCCAGAGGCAGCCCACCCGCAGACGACCCACCGAGAGGCAGGCTATCGACACAAACACCAGAACCCACACGCCCAAACCTCCGACCACCAGACTGCCTCACTCACCTGTAACGCAGGTCAGACGAGGCTCTCCAGATCTTTCACCGCAGCAGACTGGCTCATCGAGGACCGTTAAGAGGTACCCTTCATCCACTGGACCCATCACCTCCAATGCTCTGCCCAACGGCCACAGCAATGGAAACAGACATGGCAGCCATggatatacacacactcagcatcTCTCGTCCTCCGGTGGCCAGCTGCGTGAGTCCCAGAGCAACGCAGTGTCTCCAGCAGGAGCCAATCTGACGGCCGGCGTGGACCGCATCAAGATCATCTTCACGCCCATGGTGTGTCGGAGGACCTGTAGCGGGGGGCGCTGCTACAACAGCTGTGAGCGTGGAGACAAAACCACCGTATACAGTGAGAACCAAGGCCCAGCACCCAAAAGCCAAGGCTTCAGACTCTTCTTTTGTCAGATTCCATGTCTGAATGGAGGACGCTGCATTGGGCAGAATGAGTGTTGGTGTCCATCAAACTCCACAGGAAAGTTCTGCCATCTTCCAGCTCCTGCTCCCAGCAAAGCTACCCCCAGCAGACGGGCCAATAGCAACGGAGCACAGAACGGATCCTCCCACTCTATGTACACCCTGCCTCTGTCCAATCAGCAAGCCTCCATGCTTCCCTCACTGGTGAATGTGCATGTCCAGCACCCTCCAGAGGCCGAGGTTCAGATCCATCAGGTAGCACGGGTCAAACCAGGCCAACCTCCTGATGGGGCACATTCAGTGCAGCAGCGTTCTCAGCCTGGAAACGGCAACGGCAATGGGGTTGGGAATGGCAATGACCACTATGGTGTACACGTCAATGGACAGAACAACGGACACAGCCACCAGAGGCCTCATAACAGACACAATGGATATGTGGGAAGGTGCTTCCAAGAGACAGTGGATGGAAAGTGTGGGAAGCCTTTGCCAGGCCTTACCAAGCAGGAGGACTGCTGTGGCAGTGTGGGGGCTTCATGGGGTCTGAACAAATGCACCGAGTGTCCAAGCAAACCCGCTTACGCAGTGATCGCCAACGGCCAAGTGGAATGTCCTAAAGGCTATAAGAGGATGAATTCAACTCATTGTCAAGATATCAACGAATGTCTGATGCCTGGCATCTGTAAGCATGCAGAATGTCTCAACACCAAGGGTAGCTACAGGTGCACGTGTAAGCCTGGATACATGCTGGATCCTGCCCGCAGCCACTGCGTCTCGGATAAAGCAGTGTCCATGAATAAAGACTCCTGCTACCGGACAGTTTCAGCAGGCACATGTAGCCTCCCACTCACCCTGAAAATCACCAAACagatctgctgctgcagccgaGTGGGCAAGGCCTGGGGAACCAACTGTGAGAAATGCCCTGTGCCTGATTCAGATCACTTTAAGGAAATCTGTCCCGCAGGCCACGGCTACACCTACTCCCATTCAGACGTGCAGATCACACTGCGAGAGCTGGAGGACGAGGAGCTTAGCCGAGTCGAGTCTTTCTTTCCTCAGATCCCCACATATCCTCTGCCTGACCAGATCCCTTTAGAGCCTCCCCATCACTCGCCCCAAATACCAGTTTCTCCTCGCCCTCCCTACCACCACCCTCAGACTCCTACAAGACCACAGCCGCAGCCTGGACAACCACCCAGAACAGCACAGGTCCCTCATCGTCCTTGGACTGACTTCCAGCACCCTGTACACGTGTCTCCGTCATTACCTGATGCTGATGAAACCTGGAATGTGCCAACCTTCACAGATCCACCTCTTGTATATCcagatgtAAGGGAGGTCACTCCTCAATCGCCCACCCACCTAAAGCCAGAGTCTAACAGCCGGGACACAGCTCCAATAAATGTTGCCACACAAGCCACAGGGGATACTGacctgtga

Function

symbol description
ltbp2 Predicted to enable microfibril binding activity. Acts upstream of or within supramolecular fiber organization. Located in extracellular exosome. Colocalizes with collagen-containing extracellular matrix. Implicated in Weill-Marchesani syndrome.

NR:

description
PREDICTED: latent-transforming growth factor beta-binding protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672486.1 True 2862 mRNA 0.55 16 28854283 28969028

Neighbor

gene id symbol gene type direction distance location
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 53044 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 105855 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 178620 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 294189 28428946 ~ 28560094 (+)
gpatch2l gpatch2l coding upstream 436478 28375537 ~ 28417805 (+)
adi1 adi1,LOC107753353 coding downstream 218547 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 296025 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 445484 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 657607 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 765585 29734613 ~ 29737276 (+)
G84296 NA non-coding upstream 29007 28823824 ~ 28825276 (+)
G84294 NA non-coding upstream 50962 28803114 ~ 28803321 (+)
G84291 fcf1,LOC107704360 non-coding upstream 81448 28770168 ~ 28772835 (+)
G84280 NA non-coding upstream 131232 28705893 ~ 28723051 (+)
G84264 NA non-coding upstream 266329 28587396 ~ 28587954 (+)
G84300 NA non-coding downstream 10445 28979473 ~ 28979778 (+)
G84307 NA non-coding downstream 43563 29012591 ~ 29018336 (+)
G84308 NA non-coding downstream 45989 29015017 ~ 29015457 (+)
G84313 NA non-coding downstream 58260 29027288 ~ 29027823 (+)
G84311 NA non-coding downstream 77715 29046743 ~ 29071659 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 1022699 27824256 ~ 27831584 (+)
fam98b NA other upstream 1032072 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 2076795 26727823 ~ 26777488 (+)
spata7 NA other upstream 2455016 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2526945 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 1236 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 30474 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 71951 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 74189 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 102863 29071891 ~ 29078898 (+)

Expression


Co-expression Network