LOC111193145


Basic Information

Item Value
gene id LOC111193145
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30627847 ~ 30631632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672497.1
acagcagcagcaacagcagctttTACCGGAGGAGATTCAGCGATTTTTCGACAGCAAACCCTTTTATTATTCcatatttactgtttaattaattgtattgtgtttaaattaccatattattgtattattacttgtattttctgtttttaatcttatatatttgtttttcaggTGTCGGAGGCCGGTGAGGGTTTACTGACACCCTGCGGTCCGACATGGAGTTTTGGCGTAGCGAAGAGCATCGCCTGGAGGGGGCTTCTGGTGGTTCAGGAGACCCCTTCATTCTGCTGCCTTTTTGTGGCACTGAGGAGCTGAGGGCTGCCTGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGACGGAGCTCAGGAGGGTCCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACGTGACCCCCCCACTCTCCTGCCTTTTTGCGAGGAGCCGGACCCCTGGACGGAGCTCAGGAGGGTTCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACACCACTCTCCCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGACGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTCGAGGGGAAGCTGAAGGCCCTTATTCAGAAGCTTTCCTGTCCCAGGCGGCATGTTGGGAGTGTCCTGGTGCCGGTTATGGAGGCAGCCCCCGCTCACAGGCTGGACTCTACGGAGCCTGAAATCCCAGCTCCAGTTGCACAGtgtgaagaagctccagctccagagCTCACCACCACCTCTCATCCGGAGCCATCCAGCCAGGGAGACACTGCACTGTCACCCACTACTAACACACAGTGCAGATCCCTGAAACGCCCTGTCACCAACTTTCGGACCTCCTTTGTGTCTCGTTTCAGGTCTCCTCGCCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAGCCTGAACTGGAGCCAGTGCCAGCTGCACAGGACGAGGGCGACCTGGAGAACGACGTGGAGGTCCTGGAGTTGGAGGATCACAGGCCAGGAGAGAGAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCATCTGCTTCAGGTGGAAAGCAAGAAAGAGCTGAAAAAGGTGATCTGTATATGATCTGGCTGTAGAGCTCTTAAatgcatacacaaacacatacataaatacatacatacacacatacataaatacatacactgcAGGGTTAGAATTTTGGTAAATGGGCTGAGGCACACAGTAGGATGTTAGCAGTAATCTAGATGATGGGATAGTGGTATGGAGGTTGTGGGTGATATTCTGTGATCTCCTATGTCGTGAGCTTGGAGGGGGGTGAGTCTGGGATGCCAGAATTCACTGCTGAGTCTTCCTGAGGTGTTCAGCGTAACGCTTATGAAGGGAGGTCCTCAGCGGATGACCCCTGTGAAGAGCTTGTGGCGTAGTGAAGGATCAGTGTATCAGTGGGAGAAGGGAAGAGTGGGTGTTTCAtgtttgggataaatgttgctgattggaAAAATGATGTGGTAAATGGCCACAGCAGCGTAGTTGATAGGTGTAGGAGTTTATGGTTCTCGTgtagttaaatgtaaatgagcgggagagtagagtataggagAAGGGAATGGGTGGAGCTCTAGATTTAACCACGGTTGCGTAACTTACATAGATATAGAGATAGACTTAGGATAcacataaaaatacacacacagtaatacactcacatacatac
>XM_022672498.1
acagcagcagcaacagcagctttTACCGGAGGAGATTCAGCGATTTTTCGACAGCAAACCCTTTTATTATTCcatatttactgtttaattaattgtattgtgtttaaattaccatattattgtattattacttgtattttctgtttttaatcttatatatttgtttttcaggTGTCGGAGGCCGGTGAGGGTTTACTGACACCCTGCGGTCCGACATGGAGTTTTGGCGTAGCGAAGAGCATCGCCTGGAGGGCACTGAGGAGCTGAGGGCTGCCTGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGACGGAGCTCAGGAGGGTCCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACGTGACCCCCCCACTCTCCTGCCTTTTTGCGAGGAGCCGGACCCCTGGACGGAGCTCAGGAGGGTTCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACACCACTCTCCCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGACGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTCGAGGGGAAGCTGAAGGCCCTTATTCAGAAGCTTTCCTGTCCCAGGCGGCATGTTGGGAGTGTCCTGGTGCCGGTTATGGAGGCAGCCCCCGCTCACAGGCTGGACTCTACGGAGCCTGAAATCCCAGCTCCAGTTGCACAGtgtgaagaagctccagctccagagCTCACCACCACCTCTCATCCGGAGCCATCCAGCCAGGGAGACACTGCACTGTCACCCACTACTAACACACAGTGCAGATCCCTGAAACGCCCTGTCACCAACTTTCGGACCTCCTTTGTGTCTCGTTTCAGGTCTCCTCGCCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAGCCTGAACTGGAGCCAGTGCCAGCTGCACAGGACGAGGGCGACCTGGAGAACGACGTGGAGGTCCTGGAGTTGGAGGATCACAGGCCAGGAGAGAGAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCATCTGCTTCAGGTGGAAAGCAAGAAAGAGCTGAAAAAGGTGATCTGTATATGATCTGGCTGTAGAGCTCTTAAatgcatacacaaacacatacataaatacatacatacacacatacataaatacatacactgcAGGGTTAGAATTTTGGTAAATGGGCTGAGGCACACAGTAGGATGTTAGCAGTAATCTAGATGATGGGATAGTGGTATGGAGGTTGTGGGTGATATTCTGTGATCTCCTATGTCGTGAGCTTGGAGGGGGGTGAGTCTGGGATGCCAGAATTCACTGCTGAGTCTTCCTGAGGTGTTCAGCGTAACGCTTATGAAGGGAGGTCCTCAGCGGATGACCCCTGTGAAGAGCTTGTGGCGTAGTGAAGGATCAGTGTATCAGTGGGAGAAGGGAAGAGTGGGTGTTTCAtgtttgggataaatgttgctgattggaAAAATGATGTGGTAAATGGCCACAGCAGCGTAGTTGATAGGTGTAGGAGTTTATGGTTCTCGTgtagttaaatgtaaatgagcgggagagtagagtataggagAAGGGAATGGGTGGAGCTCTAGATTTAACCACGGTTGCGTAACTTACATAGATATAGAGATAGACTTAGGATAcacataaaaatacacacacagtaatacactcacatacatac
>XM_022672499.1
acagcagcagcaacagcagctttTACCGGAGGAGATTCAGCGATTTTTCGACAGCAAACCCTTTTATTATTCcatatttactgtttaattaattgtattgtgtttaaattaccatattattgtattattacttgtattttctgtttttaatcttatatatttgtttttcaggTGTCGGAGGCCGGTGAGGGTTTACTGACACCCTGCGGTCCGACATGGAGTTTTGGCGTAGCGAAGAGCATCGCCTGGAGGGGGCTTCTGGTGGTTCAGGAGACCCCTTCATTCTGCTGCCTTTTTGTGGCACTGAGGAGCTGAGGGCTGCCTGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGACGGAGCTCAGGAGGGTCCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACGTGACCCCCCCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGACGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTCGAGGGGAAGCTGAAGGCCCTTATTCAGAAGCTTTCCTGTCCCAGGCGGCATGTTGGGAGTGTCCTGGTGCCGGTTATGGAGGCAGCCCCCGCTCACAGGCTGGACTCTACGGAGCCTGAAATCCCAGCTCCAGTTGCACAGtgtgaagaagctccagctccagagCTCACCACCACCTCTCATCCGGAGCCATCCAGCCAGGGAGACACTGCACTGTCACCCACTACTAACACACAGTGCAGATCCCTGAAACGCCCTGTCACCAACTTTCGGACCTCCTTTGTGTCTCGTTTCAGGTCTCCTCGCCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAGCCTGAACTGGAGCCAGTGCCAGCTGCACAGGACGAGGGCGACCTGGAGAACGACGTGGAGGTCCTGGAGTTGGAGGATCACAGGCCAGGAGAGAGAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCATCTGCTTCAGGTGGAAAGCAAGAAAGAGCTGAAAAAGGTGATCTGTATATGATCTGGCTGTAGAGCTCTTAAatgcatacacaaacacatacataaatacatacatacacacatacataaatacatacactgcAGGGTTAGAATTTTGGTAAATGGGCTGAGGCACACAGTAGGATGTTAGCAGTAATCTAGATGATGGGATAGTGGTATGGAGGTTGTGGGTGATATTCTGTGATCTCCTATGTCGTGAGCTTGGAGGGGGGTGAGTCTGGGATGCCAGAATTCACTGCTGAGTCTTCCTGAGGTGTTCAGCGTAACGCTTATGAAGGGAGGTCCTCAGCGGATGACCCCTGTGAAGAGCTTGTGGCGTAGTGAAGGATCAGTGTATCAGTGGGAGAAGGGAAGAGTGGGTGTTTCAtgtttgggataaatgttgctgattggaAAAATGATGTGGTAAATGGCCACAGCAGCGTAGTTGATAGGTGTAGGAGTTTATGGTTCTCGTgtagttaaatgtaaatgagcgggagagtagagtataggagAAGGGAATGGGTGGAGCTCTAGATTTAACCACGGTTGCGTAACTTACATAGATATAGAGATAGACTTAGGATAcacataaaaatacacacacagtaatacactcacatacatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672497.1 True 1817 mRNA 0.51 11 30627847 30631632
XM_022672498.1 False 1769 mRNA 0.51 10 30627847 30631632
XM_022672499.1 False 1688 mRNA 0.50 9 30627847 30631632

Neighbor

gene id symbol gene type direction distance location
LOC103031349 ece2 coding upstream 64053 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 300695 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 389322 30196717 ~ 30238525 (+)
LOC103031974 NA coding upstream 437677 30189061 ~ 30190170 (+)
LOC103030290 NA coding upstream 443035 30180920 ~ 30184812 (+)
LOC103037625 LOC103037625 coding downstream 81972 30713604 ~ 30746863 (+)
rpp40 NA coding downstream 251676 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 291337 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 311044 30942676 ~ 30991541 (+)
tshz1 NA coding downstream 398379 31030011 ~ 31049206 (+)
G84806 NA non-coding upstream 33439 30593633 ~ 30594408 (+)
G84804 NA non-coding upstream 38824 30580056 ~ 30589023 (+)
G84805 NA non-coding upstream 44041 30583155 ~ 30583806 (+)
G84803 NA non-coding upstream 57947 30569698 ~ 30569900 (+)
G84795 NA non-coding upstream 114643 30465598 ~ 30513204 (+)
G84831 NA non-coding downstream 55288 30686920 ~ 30689161 (+)
G84858 NA non-coding downstream 72844 30704476 ~ 30707183 (+)
G84870 pik3cb non-coding downstream 138969 30770601 ~ 30771083 (+)
G84877 NA non-coding downstream 173569 30805201 ~ 30805742 (+)
G84906 NA non-coding downstream 266287 30897919 ~ 30899179 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 12785 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 612667 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1548949 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1584108 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1586240 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 823352 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1118071 31749703 ~ 31805403 (+)
G85189 NA other downstream 1191954 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1567551 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1804585 32436217 ~ 32441318 (+)

Expression


Co-expression Network