efcab11 (efcab11,LOC107755768,LOC107680765,LOC107588272,LOC107693110)


Basic Information

Item Value
gene id efcab11
gene name efcab11,LOC107755768,LOC107680765,LOC107588272,LOC107693110
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 36059850 ~ 36139729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672507.1
atgaccaagctaaTCGAGAAGTGTGGGGTCCCTTTGGAGCGGTTCGTGTCTCTCATGGGGAGGAAGTTGTCAGCGGAGGATCCGTATGAGAAGACGAGGCACGTCTTCAGCGCATTTGATGTACACTGTCGAGGGTTCCTGAAGCTGGAGGACTTCAAAAGCGTCTTCGCTCGCGTGGCTCCCCGCCTGCCGGACAGAACGGTGCTGGAGGCCTTTCGCCAAATGGACCATGACTCGGATGGCCACATCAGCTTCAAGGACTTTGAGAACGTGATCACTTACGGGCTGGTCAACCACTGAGAAGCCATGGCGGCTGCTGAAATAAAGGCTGTGGGATCAGCTGTAAGTGTCCACAGGCGACTGGACCTCCCCCAATCTTTATGTTTCAACACAAACACTTTCATCCCCACAATTTAGAGCTCCTCGCTGTTCATTCAAGCCTTCGGCAGGTAAACACTTGCCCCCCCCTCTCCTCCCCCCCGCTCCTCCCCCCTGCTCTCTGAAAGGCAGCGGTCAGCCATTAGGAGAGTGCACCCTGGCCTTGTCTATTGAAAGGCAGAGTAGCTTCAATGCTTTCAGTTGAGTTTGATGATGAGCTTTGATGTTGATATTGATCCAGTTACTGTGAGGCAGCCCTGTGTAATAGGGGCGTACTCATGCTGTATCTATTGTCCAGTTGTTTTACAGGCTGCATTAAGGATAAACCCGGTCTCGACAGCTTTCATTTACCAGGTTGTGCTCtaccagttgttttttttttttttttctcacagtaAATTTGGGAGCTTCTCTTTTTTACAGGGGACTCCTGTGTACTTGCTGTTTCATCCCAGTACACAGCATGTGAATTACATACCATTGGATGCCCTAAAATTAGAGATGTAGTTTAGCCCCTGATCCGGTCAGATtctcttaatgctgagtatAAGCAGATCCAGCTGATCCAATCCAATctgctgtatttttcacactataagatgcaccagattttaaagcgcactatcaataaccatctattttc

Function

symbol description
efcab11 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB11 (EF-hand calcium binding domain 11).

NR:

description
PREDICTED: EF-hand calcium-binding domain-containing protein 11

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23853 EFCAB11; EF-hand calcium-binding domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672507.1 True 1021 mRNA 0.48 4 36059850 36139729

Neighbor

gene id symbol gene type direction distance location
LOC103042687 kif13b,LOC107751739,LOC107583481,LOC107755780 coding upstream 186779 35796150 ~ 35873071 (+)
LOC103042380 LOC108437745 coding upstream 373208 35667700 ~ 35686642 (+)
LOC103041454 NA coding upstream 790382 35264933 ~ 35269468 (+)
LOC103028446 LOC108423447,LOC108269492 coding upstream 1267388 34787350 ~ 34792462 (+)
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding upstream 1273735 34767062 ~ 34786115 (+)
ston2 ston2 coding downstream 262787 36402516 ~ 36469419 (+)
dio2 dio2,LOC107751736,LOC107588276,LOC107680786 coding downstream 404361 36544090 ~ 36554039 (+)
alkbh1 NA coding downstream 1264090 37403819 ~ 37412256 (+)
sptlc2 sptlc2,sptlc2a,LOC107751731,LOC107680801 coding downstream 1308526 37448255 ~ 37500438 (+)
ism2 ism2,LOC108413947,LOC107583490,LOC107668626 coding downstream 1368366 37508095 ~ 37562468 (+)
G86012 NA non-coding upstream 14708 36042134 ~ 36045142 (+)
G86010 NA non-coding upstream 19900 36031990 ~ 36039950 (+)
G85995 NA non-coding upstream 73170 35894548 ~ 35986680 (+)
G86000 NA non-coding upstream 93478 35966071 ~ 35966372 (+)
G85990 NA non-coding upstream 113568 35879880 ~ 35946282 (+)
G86107 NA non-coding downstream 187710 36327439 ~ 36329474 (+)
G86108 NA non-coding downstream 202452 36342181 ~ 36349224 (+)
G86039 NA non-coding downstream 233800 36373529 ~ 36383820 (+)
G86136 NA non-coding downstream 247758 36387487 ~ 36387713 (+)
G86140 NA non-coding downstream 266088 36405817 ~ 36406138 (+)
LOC111193254 NA other upstream 401763 35636810 ~ 35658087 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other upstream 720018 35288215 ~ 35339832 (+)
G85740 zdhhc14 other upstream 1259473 34746814 ~ 34800377 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 3618532 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 3841088 32199183 ~ 32218762 (+)
LOC111193255 NA other downstream 1344292 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 1690026 37829755 ~ 37933289 (+)
G86497 vrk1,LOC106602366 other downstream 2525438 38665167 ~ 38698313 (+)
LOC111193151 NA other downstream 2917250 39056979 ~ 39059386 (+)
LOC111193159 NA other downstream 3060488 39200217 ~ 39251958 (+)

Expression


Co-expression Network