itpka (itpka)


Basic Information

Item Value
gene id itpka
gene name itpka
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 470513 ~ 495668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672545.1
GTCAGGAAGCAGCAGCTCGTGCGCAGCACGAACACGGAAGATCCTCCCGGAGAGCGCGCGGCGCGGGGCTGAGCTGAGCTCGAGCCGCGCGGAGCTTCACTCACTGCAGCCTCGTCTGAACGGAGCAGCGCGTGCGGGGGACCGGCGGGAGACACGCGCACATATACCCGCACCAGAGTGCGGGACCGCCGGGAGCGCGCGTGCGGGGAGACGCGGAGCTGCGGGagcaggaggtggaggaggtggaggcaGGAGGCAGAAGGGGTGTCCTGAGGCTGGTTCCTCTGCGGTTCCTCTCCTGAGGCAGACAGATGCCCAAAGAGAGGCGGAGGTCTCTGAGGGAGGCCGCGGTGAGCAGGGCTTCTCCTCTGGGGGACGGCGGCGGGGCGGGGAAAGAGCGCCGCTTCTCCACCgatcagcagcaggaggagcatCAGTCATccatggaggaggaggagcagcaggagctccagCGGAGCTCCGAGCACAGCGGGCCGGGCAGGGGCGGCCCCGTGCCGCAGGTCACCATCACCGCGGCCGCCGCGGACGGGCTGGCggagctggaggagaacatggacgAGGTGAACGGACCCCTCCGCCGCAAGCTCTCCaactcctccatctcctccaaCGGGTCCTCCGCCGCGATGGAGGAATCGGAGGACGATATTCTGAGCGACAACGAGACCAAGAGCAAAGGTATCGTTACTCTGGAGCACCTGGGGGACTCAGGAGAGgCTAAAGCCTGGTGGAAGCTGAAGACTGTTGTACATTGGCCTCTCGTAGCTTCACATAGGAAGAGACTGTCCTGGGTCCAACTTGCGGGTCATAAAgGAAGTTTTAAAGCAGCTGAAGAGGGCACGATCCTGAAGAAATACTCggagaatgagaagaggtgtttTGAGAGTCTGAGAGATGACGCTCTCCAGCGTTTTGTTCCAGCGTATCACGGCGTGGTGGAGCGAGACGGAGATCTCTTCCTGCAGATGAACGACCTGCTGGTGAACTTCGATGGGCCGAATGTCATGGACTGCAAAATGGGAGTGAGGACGTatcaggaggaggagctggagcgaGCTCGGGAGAAGCCGAAGTTGAGGAGGGATCTGTATAATAAGATGTTGGAGGTGGACAGTGAAGCTCCTACAGCCGAGGAGCAGAAGCAGCAGGCCATCACCAAACCCAGATACATGCAGTGGAGGGAAAGCCTCAGCTCCACCAACACTCTGGGGTTCCGCATCGAGGGCGTCAAGAAAGCAGATGGAACGTGTCACACAGACTTTAAGAAGACTCGGTCGAGGGAGGACGTAACGCAGGTCTTCAGGGACTTCGTCAGCGAGAACGGAAACATAATTAGCTCCTACATTAGGAGGCTGGAGGAAATCAGACAGGCTCTAAAGGCTTCAGAGTTCTTCATGAAACACGAGGTCATCGGGAGTTCGCTGCTGTTCATCCACAATCACACGGAGCGCGCCGAGGTCTGGCTGATCGACTTCGGGAAGACCACGCCGCTTCCAGACGGACAGACGGTGGACCACTGGAGCCCCTGGCAGGAGGGGAACCGAGAGGACGGATATTTATGGGGTCTGGAGAACCTCCTCCATACCCTCACCTCACTAAACACAGAGTGCTCACCACAGCGTGTTCACACTCAGCGTTCACTATGATAACTCTCCATCTGATCTCCAGACGAGGAGGAAACGGAGACAGGGACTCTTTCACAGCGTGCCGCGGACACAAGTGACGTCACCATCTCCTTATTTACAGGATTCAGCCGAAAAATCTCTCGTTTCTGACTCATCCGTCGAGTTCGTCTCGAGTTTTCTCTTTATACGAGTCACTGATCAGCAGAGCTGCTTCTAAACTTCACCTGGTGCTTCTTATTTTTCTCTAGATATGATCAAACCCCACagcaatgcatttaaaataatcCAACAGCCATAATCAACACTATAAACACAAACAGCTCGGTAAAAAATGAGGACATTGGTTTTAGCAGAAATAAGGTACTGTacgtatattttacattctagtttttagacaaaaatgaaaaaacaacatggccaaatgctaatgctaagtaaaaaatggtaaaatgatgACAAGCTGTTGGCTGTTGGTGTTCAATAgaccaatatacagctctgaaaaaaaaatatttcagtttttctgattttgcaatATGTTtgagtggaataaccctggtt
>XM_022672546.1
CAAGGgaaggagaggcagcagatcgAGAATttacaccttaacaaccactctGTAAACCATAGCAACAGGAAAGAAAACACCCACTTAGCAACGACCTGGGattccatagcaaccatgtaTCCAAATGTATTTGCACTGTAGCATTTTGCCAGAAGTTAAAAACATAGCAACAATTTGAACTTTTTGAAAGGTTATTAATGAGCTTTTTTCAAGCCAGCTTAAAGTTTGTTCagaaaaattaactttttagatttcttttttgtattttaatgagTTAGATTAGTGTGAGGAGTTTGTGAGGAGATTGAGACTCTCTGACTCTACTAATACAACTATTAATACTGCTATTAATACTACAGGagcaggaggtggaggaggtggaggcaGGAGGCAGAAGGGGTGTCCTGAGGCTGGTTCCTCTGCGGTTCCTCTCCTGAGGCAGACAGATGCCCAAAGAGAGGCGGAGGTCTCTGAGGGAGGCCGCGGTGAGCAGGGCTTCTCCTCTGGGGGACGGCGGCGGGGCGGGGAAAGAGCGCCGCTTCTCCACCgatcagcagcaggaggagcatCAGTCATccatggaggaggaggagcagcaggagctccagCGGAGCTCCGAGCACAGCGGGCCGGGCAGGGGCGGCCCCGTGCCGCAGGTCACCATCACCGCGGCCGCCGCGGACGGGCTGGCggagctggaggagaacatggacgAGGTGAACGGACCCCTCCGCCGCAAGCTCTCCaactcctccatctcctccaaCGGGTCCTCCGCCGCGATGGAGGAATCGGAGGACGATATTCTGAGCGACAACGAGACCAAGAGCAAAGGTATCGTTACTCTGGAGCACCTGGGGGACTCAGGAGAGgCTAAAGCCTGGTGGAAGCTGAAGACTGTTGTACATTGGCCTCTCGTAGCTTCACATAGGAAGAGACTGTCCTGGGTCCAACTTGCGGGTCATAAAgGAAGTTTTAAAGCAGCTGAAGAGGGCACGATCCTGAAGAAATACTCggagaatgagaagaggtgtttTGAGAGTCTGAGAGATGACGCTCTCCAGCGTTTTGTTCCAGCGTATCACGGCGTGGTGGAGCGAGACGGAGATCTCTTCCTGCAGATGAACGACCTGCTGGTGAACTTCGATGGGCCGAATGTCATGGACTGCAAAATGGGAGTGAGGACGTatcaggaggaggagctggagcgaGCTCGGGAGAAGCCGAAGTTGAGGAGGGATCTGTATAATAAGATGTTGGAGGTGGACAGTGAAGCTCCTACAGCCGAGGAGCAGAAGCAGCAGGCCATCACCAAACCCAGATACATGCAGTGGAGGGAAAGCCTCAGCTCCACCAACACTCTGGGGTTCCGCATCGAGGGCGTCAAGAAAGCAGATGGAACGTGTCACACAGACTTTAAGAAGACTCGGTCGAGGGAGGACGTAACGCAGGTCTTCAGGGACTTCGTCAGCGAGAACGGAAACATAATTAGCTCCTACATTAGGAGGCTGGAGGAAATCAGACAGGCTCTAAAGGCTTCAGAGTTCTTCATGAAACACGAGGTCATCGGGAGTTCGCTGCTGTTCATCCACAATCACACGGAGCGCGCCGAGGTCTGGCTGATCGACTTCGGGAAGACCACGCCGCTTCCAGACGGACAGACGGTGGACCACTGGAGCCCCTGGCAGGAGGGGAACCGAGAGGACGGATATTTATGGGGTCTGGAGAACCTCCTCCATACCCTCACCTCACTAAACACAGAGTGCTCACCACAGCGTGTTCACACTCAGCGTTCACTATGATAACTCTCCATCTGATCTCCAGACGAGGAGGAAACGGAGACAGGGACTCTTTCACAGCGTGCCGCGGACACAAGTGACGTCACCATCTCCTTATTTACAGGATTCAGCCGAAAAATCTCTCGTTTCTGACTCATCCGTCGAGTTCGTCTCGAGTTTTCTCTTTATACGAGTCACTGATCAGCAGAGCTGCTTCTAAACTTCACCTGGTGCTTCTTATTTTTCTCTAGATATGATCAAACCCCACagcaatgcatttaaaataatcCAACAGCCATAATCAACACTATAAACACAAACAGCTCGGTAAAAAATGAGGACATTGGTTTTAGCAGAAATAAGGTACTGTacgtatattttacattctagtttttagacaaaaatgaaaaaacaacatggccaaatgctaatgctaagtaaaaaatggtaaaatgatgACAAGCTGTTGGCTGTTGGTGTTCAATAgaccaatatacagctctgaaaaaaaaatatttcagtttttctgattttgcaatATGTTtgagtggaataaccctggtt

Function

symbol description
itpka Predicted to enable inositol hexakisphosphate kinase activity. Predicted to be involved in inositol phosphate biosynthetic process and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human ITPKA (inositol-trisphosphate 3-kinase A).

NR:

description
PREDICTED: inositol-trisphosphate 3-kinase A

GO: NA

KEGG:

id description
K00911 ITPK; 1D-myo-inositol-triphosphate 3-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672545.1 False 2207 mRNA 0.55 8 470513 495668
XM_022672546.1 True 2342 mRNA 0.50 7 471454 495668

Neighbor

gene id symbol gene type direction distance location
LOC103044274 LOC108425589,LOC108269650,LOC107697665,LOC107719518,LOC107563387 coding upstream 101510 359136 ~ 369003 (+)
ccdc32 cunh15orf57,LOC103043985 coding upstream 115533 352153 ~ 354980 (+)
disp2 disp2 coding upstream 132566 321307 ~ 337947 (+)
degs2 degs2,LOC107697737,LOC107733197,LOC107674056 coding upstream 281379 178406 ~ 189134 (+)
tpp1 tpp1 coding upstream 296644 163028 ~ 173869 (+)
LOC103041189 si:dkey-13p1.4,LOC103041189,LOC108436737,LOC107697687,LOC107674053,LOC107733120,LOC107719509,LOC108269552 coding downstream 151231 646899 ~ 651689 (+)
adprhl2 adprhl2,LOC107697751,LOC107674064,LOC107594801,LOC107719508 coding downstream 165871 661539 ~ 666304 (+)
cinp NA coding downstream 171537 667205 ~ 671575 (+)
nubpl nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123 coding downstream 258571 754239 ~ 761723 (+)
arhgap5 arhgap5,LOC107594795,LOC107733129,LOC107719447,LOC107561551 coding downstream 280456 776124 ~ 814690 (+)
G77049 NA non-coding upstream 2613 457903 ~ 467900 (+)
G77048 ivd,LOC107719458,LOC107733087 non-coding upstream 5381 459268 ~ 465132 (+)
G77033 NA non-coding upstream 87229 383045 ~ 383284 (+)
G76976 NA non-coding upstream 112400 238265 ~ 358113 (+)
G77008 NA non-coding upstream 217982 252010 ~ 252531 (+)
G77054 NA non-coding downstream 20958 516626 ~ 529843 (+)
G77060 NA non-coding downstream 26642 522310 ~ 534604 (+)
G77135 NA non-coding downstream 65235 560903 ~ 561171 (+)
G77137 NA non-coding downstream 70697 566365 ~ 566655 (+)
G77148 NA non-coding downstream 118343 614011 ~ 621295 (+)
ldah ldah other upstream 337210 84719 ~ 133303 (+)
G77059 NA other downstream 23965 519633 ~ 520590 (+)
G77154 NA other downstream 136046 631714 ~ 632372 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other downstream 387629 883297 ~ 935678 (+)
G77212 NA other downstream 509461 1005129 ~ 1008842 (+)
G77410 NA other downstream 989002 1484670 ~ 1485050 (+)

Expression


Co-expression Network