nubpl (nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123)


Basic Information

Item Value
gene id nubpl
gene name nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 754239 ~ 761723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672550.1
GGGAGGTGTGATTATTTCTCAGAAACAGGCTGTTTAGGAGAGAAATGTCAGCGTTAGCTgggctgtgtgtagctgttgctgctgttgctgctgtttctgAGCTGAGGATCCTGtaattagttatatatataatagtaataaatatatatcaggTTTATTTCAGCTGTGAAATGTTTCACTGCAGCTGCAGGACGTTAATACAGGTGTGTAAGCTCTTCTCAGCTAAACCTGCCTCTGTCCTGTGGGCTGGGAGACACACAGGACCTCTGACAGGGGTCTGTAAACATGATGTTCGGTTTAAGTCTTCAGGTGCTGGTGAGAGAACACTGCAGGAAAGGCAGCGGGCACACATGGCACGAGGCTTACCCAAACAGAAACCCATAGCAGGAGTTAAAGAGGTGATTGTTGTTGCTTCAGGAAAAGGAGGTGTCGGGAAATCTACAACAGCAGtcaATCTTGCTCTTGGACTTACAGCAAATGATCAGAGTAAACAAGTGGGTATTTTGGATGCAGATGTTTACGGCCCTTCAGTTCCAAAGCTGATGAACCTTAGAGGAAATCCAGAACTAACAGACAataatttaatGAGACCTTTAACAAACTTTGGAATACCTTGTATGTCGATGGGATTTCTGGTTGAAGATACTGCACCCATTGTGTGGAGGGGTCTGATGGTGATGTCTGCCATCGAGAAGCTTCTTAGACAGgtGGACTGGGGGCTTTTGGATTATTTAATAGTTGACATGCCTCCTGGAACAGGAGACGTCCAACTCTCCATTACACAGAACATCCCAATAGCAgGAGCTGTGATTGTATCCACTCCACAGGACATTGCTCTGCTCGATGCACGCAGAGGTGCTGAGATGTTTCGCAAAGTTAATGTACCGGTTCTGGGTTTGGTTCAGAATATGAGTGTTTTCCAGTGTCCCCAGTGTAATcaccaaacacacatttttggGTCAGATGGAGCAAGAGAGTTAGCACGGACACTTGGAGTAGAAGTTCTTGGGGATATTCCACTTCATCTAAACATCAGAGAGAAATCAGATAAGGGTCAACCTGTAGTGGTGTCTTCTCCTGACAGTCCTGAGGCTGAAGCGTACAGAAGAGTAGCCTCAGCAGTGGTGCGTCGGCTCGCAGAGGAGTCCAGATGAACGGGCTCGATACTGATTAACTCTGAAAGTCATGGTTAACTAACAAAACTCTATGATTGTATTTGCataggaaaagaaagaaaaacactggtTTATCCAGTATAACACCACAACACTGTTATTTCCCTGTGTCATCAACTGGCTAGGTTTAAAAAATCCAGTATATGATTCAGAAATTACatagatttttcttttattgtacgCACATTAGTTGTTGTTCCATTACAGCAACAGTTGAATGTCTTATTTTGGTCAATCATTTCTACGTTTTTGAATTTCTGTAAAAGTCATATCCATTTGAAAAGCACTTTATAAGTAAGACAAGACAGTAGTAATAGTGAGTATGGCCTGATCTTTCCCCTTAAAACCGACACAAATTGGATTTACTCCTTTGGGACTGTGGtttcaaacacaacacagactAAACCACTGTCTGCCACCAATCTTCGTACACTATCAAACTTAATTTTTTCAAAACATCCTTTCTTTTGGACCTTTAAGCTCTTTAGATCCAGTCCAGAAGCTGttaattttagtattgtaaaagaaattgtttattataaaaaaacatatattgtttaaaaaagaggGGAACATTTTATATAACAGCTCACAGCTGGTAAGTATTAatagaaataaactgagctatagaaa
>XM_022672551.1
TCAGCTAAACCTGCCTCTGTCCTGTGGGCTGGGAGACACACAGGACCTCTGACAGGGGTCTGTAAACATGATGTTCGGTTTAAGGTGCTGGTGAGAGAACACTGCAGGAAAGGCAGCGGGCACACATGGCACGAGGCTTACCCAAACAGAAACCCATAGCAGGAGTTAAAGAGGTGATTGTTGTTGCTTCAGGAAAAGGAGGTGTCGGGAAATCTACAACAGCAGtcaATCTTGCTCTTGGACTTACAGCAAATGATCAGAGTAAACAAGTGGGTATTTTGGATGCAGATGTTTACGGCCCTTCAGTTCCAAAGCTGATGAACCTTAGAGGAAATCCAGAACTAACAGACAataatttaatGAGACCTTTAACAAACTTTGGAATACCTTGTATGTCGATGGGATTTCTGGTTGAAGATACTGCACCCATTGTGTGGAGGGGTCTGATGGTGATGTCTGCCATCGAGAAGCTTCTTAGACAGgtGGACTGGGGGCTTTTGGATTATTTAATAGTTGACATGCCTCCTGGAACAGGAGACGTCCAACTCTCCATTACACAGAACATCCCAATAGCAgGAGCTGTGATTGTATCCACTCCACAGGACATTGCTCTGCTCGATGCACGCAGAGGTGCTGAGATGTTTCGCAAAGTTAATGTACCGGTTCTGGGTTTGGTTCAGAATATGAGTGTTTTCCAGTGTCCCCAGTGTAATcaccaaacacacatttttggGTCAGATGGAGCAAGAGAGTTAGCACGGACACTTGGAGTAGAAGTTCTTGGGGATATTCCACTTCATCTAAACATCAGAGAGAAATCAGATAAGGGTCAACCTGTAGTGGTGTCTTCTCCTGACAGTCCTGAGGCTGAAGCGTACAGAAGAGTAGCCTCAGCAGTGGTGCGTCGGCTCGCAGAGGAGTCCAGATGAACGGGCTCGATACTGATTAACTCTGAAAGTCATGGTTAACTAACAAAACTCTATGATTGTATTTGCataggaaaagaaagaaaaacactggtTTATCCAGTATAACACCACAACACTGTTATTTCCCTGTGTCATCAACTGGCTAGGTTTAAAAAATCCAGTATATGATTCAGAAATTACatagatttttcttttattgtacgCACATTAGTTGTTGTTCCATTACAGCAACAGTTGAATGTCTTATTTTGGTCAATCATTTCTACGTTTTTGAATTTCTGTAAAAGTCATATCCATTTGAAAAGCACTTTATAAGTAAGACAAGACAGTAGTAATAGTGAGTATGGCCTGATCTTTCCCCTTAAAACCGACACAAATTGGATTTACTCCTTTGGGACTGTGGtttcaaacacaacacagactAAACCACTGTCTGCCACCAATCTTCGTACACTATCAAACTTAATTTTTTCAAAACATCCTTTCTTTTGGACCTTTAAGCTCTTTAGATCCAGTCCAGAAGCTGttaattttagtattgtaaaagaaattgtttattataaaaaaacatatattgtttaaaaaagaggGGAACATTTTATATAACAGCTCACAGCTGGTAAGTATTAatagaaataaactgagctatagaaa

Function

symbol description
nubpl Predicted to enable 4 iron, 4 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly and mitochondrial respiratory chain complex I assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 21. Orthologous to human NUBPL (nucleotide binding protein like).

NR:

description
iron-sulfur protein NUBPL isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03593 mrp, NUBPL; ATP-binding protein involved in chromosome partitioning

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672550.1 True 1808 mRNA 0.41 11 754239 761723
XM_022672551.1 False 1583 mRNA 0.41 11 754457 761723

Neighbor

gene id symbol gene type direction distance location
cinp NA coding upstream 82664 667205 ~ 671575 (+)
adprhl2 adprhl2,LOC107697751,LOC107674064,LOC107594801,LOC107719508 coding upstream 87935 661539 ~ 666304 (+)
LOC103041189 si:dkey-13p1.4,LOC103041189,LOC108436737,LOC107697687,LOC107674053,LOC107733120,LOC107719509,LOC108269552 coding upstream 102550 646899 ~ 651689 (+)
itpka itpka coding upstream 258571 470513 ~ 495668 (+)
LOC103044274 LOC108425589,LOC108269650,LOC107697665,LOC107719518,LOC107563387 coding upstream 385236 359136 ~ 369003 (+)
arhgap5 arhgap5,LOC107594795,LOC107733129,LOC107719447,LOC107561551 coding downstream 14401 776124 ~ 814690 (+)
eef1akmt2 mettl10 coding downstream 73254 834977 ~ 838153 (+)
LOC103042422 LOC107594852 coding downstream 254110 1015833 ~ 1033566 (+)
adam12 LOC108436745,LOC108270250,LOC107752796,LOC107697763,LOC107592760,LOC107733079 coding downstream 277151 1038874 ~ 1179637 (+)
LOC103043042 LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766 coding downstream 425397 1187120 ~ 1203142 (+)
G77166 NA non-coding upstream 77014 674876 ~ 677225 (+)
G77163 NA non-coding upstream 94037 657916 ~ 660202 (+)
G77148 NA non-coding upstream 132944 614011 ~ 621295 (+)
G77137 NA non-coding upstream 187584 566365 ~ 566655 (+)
G77135 NA non-coding upstream 193068 560903 ~ 561171 (+)
G77181 NA non-coding downstream 24516 786239 ~ 894659 (+)
G77200 NA non-coding downstream 141315 903038 ~ 903239 (+)
G77201 NA non-coding downstream 141695 903418 ~ 903986 (+)
G77203 NA non-coding downstream 146083 907806 ~ 908280 (+)
G77207 NA non-coding downstream 151385 913108 ~ 913660 (+)
G77154 NA other upstream 121867 631714 ~ 632372 (+)
G77059 NA other upstream 233649 519633 ~ 520590 (+)
ldah ldah other upstream 620936 84719 ~ 133303 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other downstream 121574 883297 ~ 935678 (+)
G77212 NA other downstream 243406 1005129 ~ 1008842 (+)
G77410 NA other downstream 722947 1484670 ~ 1485050 (+)
c9h15orf52 NA other downstream 767247 1528970 ~ 1563180 (+)
G77471 bub1b other downstream 931633 1693356 ~ 1696981 (+)

Expression


Co-expression Network