LOC103043042 (LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766)


Basic Information

Item Value
gene id LOC103043042
gene name LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1187120 ~ 1203142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672559.1
TCCGCTCAGACCGACAGCGCGCGCGGGGACAGCGGAGCGGCCAGAGCGCGCGCCTTTATTCtttaactttattctttataCTTTACTTTATACTTTTCTCTACTGATTCTCACAGAATAACAAATCATATTCCCGAAATTTCTCCACACAGATGGACAGAAACAGAGATCAGTAACTGATCAGTATCTGTTTTACACCGCTTTAATCTTCTCGCGGATTTATATCGGGATATGGCGGCGGCGCGCGCCGGAGATCTGATGATGGATAAATGTGGAGATCTGGACTCGGTTAAGGATCTGGATGCTGATGATCTTCTGGAGCTGAATCAGTTCGACGGGCTTCCCTTCTCCTCCCGATATTATAAACTACTGAGAGAGAGGAAAACCCTGCCGGTCTGGGGAGCAAAGCACGAGTTCATAGAGgcgataatcaataatcagattattattatcagcGGATCCGCTAAAACTGGACAAAGCACTCAGATTCCTCAGTGGTGTGCGGAGTTCTGTCTGTCGGTTCAGTACCAGAACGGGATGGTGGTGTGCACTCAGATCCACCGACAGAGCACCGTGGACCTGGCCCTGAGAGTGGCCGACGAGATGGACGTGAACATCGGTCACGAGGTGGGATACAACGTCCCTCTTCAGACCTGCTGCTCTACCGACACTGTTCTGAGATACTGCACTGATGACCTCTTGCTTCGTGAGATGATGTCGGATCCTCTGCTGGAGCAGTACGGCGTGGTGGTAATAGATCAGGCTCAGGAGCGCACCGTCAGTACCGACCTCCTGCTGGGTTTACTGAAAGACGTGCTCCTCTCACGTCCTGAGCTCCGACTGGTCGTCCTCACTGCTCCTCACTCCTCCCACAAACTCCTCCACCACTACGGAGGCATTCCCCTGATCCGGCTGGATGCAGGACGTCCCTCTGAGGTGGTTTACGGGACAGAGAGGGGAGGTGTGAAGGATTACCTGTGTTCTACACTCCGCCTGGCCATGGAGATCCACCAGACTCAGAGTCCTGGAGATATTGTGGCGTTTCTCGCCACTGAACAGGAAATTGAATGCGCTCATGCCATCCTGCGGAGAGAAGGGGCCGGTCTGTCCTCATCATTAGGTGAGCTGGTGCCGGTGTCCCTGTGTCCACAGCAAGGAGACAGCGTCCCTGCGTCCACAGAGGAGGACAGCAGGTCCAGGAAGGTGTTCCTCACCTGCGGCCCCACTGAAGACCTGTTCTGGGCCATGCACAGCATTCGCTTCATCATCGACGCTGGAGTACAGAAGAGAtatGTGTACAACCCCCGAATCAGAGCCAACTCCATTGTGATCCGACCAATCAGTAAAAGCCAAGCTGAGGGCCGCAAACAGCTGATTGGACCAACAGggaagtgtttttgtttgtatcCGGAGGCCACGCCCCTTCCTGCtgagagtgttcctcacattcTGGAGTCTAACATCACGTCCACGGTGCTGTTCCTGAAGAGGATGGAGATCGCTGGGCTGGGCAACTGTGAATTCATTGACAGACCAGATCCCGAGGGCCTCATGCAGGCTTTAGAGGAGCTGGACTACCTGGCGGCTCTGGATGACGATGGTAATCTCTCAGAGATTGGAATAATAATGTCTGAATTCCCTCTGGAGCCACAGATGGCTAAGACTCTGCTGGCTTCCTGCGAGTTCGACTGCGTCAATGAGGTGCTGACCATTGTCTCCATGCTAACAGcTCCGAACTGTTTCCTGGCTCCTCCTGTGGAGTTTAAACAGGAGGCTTTGGAGAGCCATCAGAGCTTCTATCACCCTGAGGGGGACCATTTTACCCTCATCAACGTCTACAACGCTTACAAACAAAGCCAGTACAGCTCATATTCCAACACAGAGCGATGGTGTGATGATCATTTTCTGAGCCTGACTGCTTTAGAAACAGCTGATGCAGTTCGAGCAGAGCTGATTGAGATCCTGAAACGGATAGAGCTTCCGGTATCATCCCCTGCTTTTGGCTCCAAGACCAATACACTGGATATTAAACGAGCTTTACTGGCTGGGTTCTTCATGCAGGTGGCGCGGGATATCGATGGAACAGGGAATTATTTCATGCTTACTCACAAACACGTGGCTCAGATCCACCCTCTGTCCGGATATGGATCAGAACCTCCCAAGAAGAAACTTCCAGAGTGGGTTCTTTACCATGAGCACATGCTGTCTGAGAACAACTGCATTCGAACAGTCACTGAGATTTCAGCACATGAGTTTATCCAGATGGCTCCTCAGTATTTCTTCTACAACCTGCCGTCTAGTGAAAGTAAAGAGGTTCTGCAGCACATCCTGGATCACGGCTCGGCCGCACCGTGTAAAGGGAAGAGGAAGCCCCAGCCGCTGAGCTCCAGCCCCAGCCAGGAGCAGAGCTACGAACGCTGTGTTATTCAGTGACTTTTAACACGCCGGGAGATTTCTCTGTGAGAACTTCAACAAACAGGCTTAAATATCGCAGATTTACGCAGATTCCTGACTGCATGGGGCTGTATGGATTAAAGCCATTTTTATGGACGTTTTTATGGAAGAAGCAGCATCTGTAAGATGCACTGTTTTGggattatactgtatatcgtcgctgtccacactgtaaacccggataagctgaatttattttaaaaattagaggaaaccgg

Function

NR:

description
PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32

GO: NA

KEGG:

id description
K18994 DHX32; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672559.1 True 2671 mRNA 0.51 11 1187120 1203142

Neighbor

gene id symbol gene type direction distance location
adam12 LOC108436745,LOC108270250,LOC107752796,LOC107697763,LOC107592760,LOC107733079 coding upstream 7483 1038874 ~ 1179637 (+)
LOC103042422 LOC107594852 coding upstream 153554 1015833 ~ 1033566 (+)
eef1akmt2 mettl10 coding upstream 348967 834977 ~ 838153 (+)
arhgap5 arhgap5,LOC107594795,LOC107733129,LOC107719447,LOC107561551 coding upstream 372430 776124 ~ 814690 (+)
nubpl nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123 coding upstream 425397 754239 ~ 761723 (+)
LOC107197738 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 coding downstream 100925 1304067 ~ 1318118 (+)
gcfc2 gcfc2 coding downstream 116277 1319419 ~ 1329088 (+)
LOC103037734 LOC105015678,LOC106588052 coding downstream 266873 1470015 ~ 1479658 (+)
mthfd1 mthfd1,LOC108269612 coding downstream 294980 1498122 ~ 1514730 (+)
plcb2 plcb2 coding downstream 378614 1581756 ~ 1617335 (+)
G77214 NA non-coding upstream 136178 965814 ~ 1050942 (+)
G77215 NA non-coding upstream 209668 970551 ~ 977452 (+)
G77198 NA non-coding upstream 249887 936248 ~ 937233 (+)
G77207 NA non-coding upstream 273460 913108 ~ 913660 (+)
G77203 NA non-coding upstream 278840 907806 ~ 908280 (+)
G77245 NA non-coding downstream 35202 1238344 ~ 1238806 (+)
G77259 NA non-coding downstream 62695 1265837 ~ 1266074 (+)
G77375 NA non-coding downstream 140954 1344096 ~ 1345264 (+)
G77376 NA non-coding downstream 142201 1345343 ~ 1349654 (+)
G77373 NA non-coding downstream 164960 1368102 ~ 1368585 (+)
G77212 NA other upstream 178278 1005129 ~ 1008842 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 251442 883297 ~ 935678 (+)
G77154 NA other upstream 554748 631714 ~ 632372 (+)
G77059 NA other upstream 666530 519633 ~ 520590 (+)
ldah ldah other upstream 1053817 84719 ~ 133303 (+)
G77410 NA other downstream 281528 1484670 ~ 1485050 (+)
c9h15orf52 NA other downstream 325828 1528970 ~ 1563180 (+)
G77471 bub1b other downstream 490214 1693356 ~ 1696981 (+)
zfyve19 zfyve19 other downstream 494823 1697965 ~ 1708297 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 709390 1912532 ~ 2009418 (+)

Expression


Co-expression Network