gcfc2 (gcfc2)


Basic Information

Item Value
gene id gcfc2
gene name gcfc2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1319419 ~ 1329088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672564.1
GAGTATTGGTCGCCCCGGCGcgctgtgttcaggtgtgtgtgtgtgtgtggtagaggtGGGTCAGTAAGATGTTTAAGAAAACGAACCGGAGGAATTTCAGAGCGCGGAGAGCGGAGTCcagcgaggaggaggaggcggagaaAAGCCCCGCCGCCGCCGCGGAGAGAGAAGCGGAGCCCCCGGCCCCGAGCTCCACACTGATTAACGCGCCCCGCAGAGGGATTTCCTGCAGCTCCAAACCGAGCGCGACCCCTCCCCGCACTGCCCGCTCCGAGAGCCCTGACTGCGGGGAGCCTGAGGACCCCCAGCCGCCCGCCGGTAAACCCCAGACCCCCGGACAAACTCCCGGTCAGACCCTCAGCTTCAGCGGGGAGAGAGACGgtgCAGATGAATCTGAATTCAAATTGAAAAGGTCCATCAACAAAGATGTGATTTTCCAAGCTCGCAAAAAGGAACAGTCGCCTGTTAAGTTGACCAAAACACAAGCAGgtGTGAAAGATGTGGATGTTAGTGAGCGCTCTGATAGCACAGCGGGGAGTTCTGCGGAGGACATCCCTCCAGACAGCGAGAGCGACAGTGAAGTTCAGTCTACATCTTCCAGAACTTCCAGCTCTTCTTCAAAACCACAGAAAGTTAACATCCCTGACTCTAAGAAGATCCGTGCAGTTAAGGAGCAGAGGAGGAGAGCTCGAGCCCAGCAGGACTACATCCCTCTAGATGAGGATCGGGAAAGCACTCCCAATAGATCAATAGACGGAGAGGGGGACCCGAGCGATGAGCATCGAGACAGTGATGATGAGCCAGATGATCATGAACGCAGAATCGAATTTGCACCCAAATCCAAAACCGTCAGGGAGAGAATGGCTGAGAAAATGGgTGGGAGTTCGAGTGAAGAGAGTGAGTCTGATAGCCAGAAGGAGGAAGACCAGCACCTCTGGGAGGAGCAGCAGATAAGAAAAGGAGTCAAAAGACACCAAAAGCAAAGCAGAGCCCGGCCTCTCAGACAGAAGAAAACGGTTAACATCCCTGAGACACTTCCCCCGGTCAGCATCAATATCATCAAAAGGAGAATCACTGGAAAGCTGGAGTCTCTGAAGGAGGTTCACAGAGCTCGGGAGGCGGAGCTCCGGAGGATGCAGCTGGACATGGAGAGCGCCAGAAGCTCTCTGGAGAACCTGGAGAACTACCCTGCTGATGAACAGCTCCGATTCTACCGCACCATGAACATCTTCTCACAGAATATGTTGGAGTGCCTTTCTGAAAAGATGGCATTAATAAACTCAGTGGAGCTGGATATGCACAGTCTTTATATTGATCAGGCGGAGTCTCTCTTGTCTCAGAGAAGACAGGAAGTGCAGCAGGAATCCACACGCCTCCAGCAGTTAACCTACAGCACTAATGCACAGAGTAATGGGGAGACGCTGGTGAAGACTGACCCACCAAAAGAAAGTGCACACATGGAGGATGATTGTGAGATTTTTCCAGCTGATTTGGAAGCAACAGCAGAGCAGGAGGCTGAGCTGCAGAGCAAAAGAGCTGACATATTGAAGAGATCTCAGGAGATATTTTCTGATGTTCAGGAGGATTTCTGGGATGTGAGGAAAATCTTGTCCAGGTTTAATGAGTGGCGGGTCTCCTTCCCAGAGTCCTACAACAATGCCTACATTGGTCTGTGCCTCCCTAAACTCTTAGCTCCACTAATACGACATCAGCTCATTGGCTGGAACCCACTCAAGGCTGAAGGTGAAGATTTTGAGGCGCTGCCATGGTATTCTGCTGTTGAAAACTTCTGCCATGGGCAGGGTTATGAAGAATCTGAAAATGCTGACAAGAAAACACTTCCTGCTATCATAGAGAAGTCCATCCTGTCCAAAATGCAAGGTTTTGTGGAGCTGGTCTGGGATCCTTTGTCTCTGCAGGAATCTCAGTGTCTGGCGTCGCTTTGCAGGAGAATACAGGAGGATTACTCTGTGTTTGATGGGGAACAAAGCAAACCTGTGAAGGCCTTTATGGAAGCTGTTATCCAGAAACTGAAAGGTGCAGTGGATAACGATGTCTTCATCCCATTATATCCAAAAAGCTTTTTGGATGATAAGACTTCCCCACAGTTCCAGTTTCAAAACCAGCAGTTTTGGTGTGCTGTTAAGCTACTTGGAAACATGGCCTTATGGGATGGTTTGGTTGCAGAAAGTGTTCTTAAGGAGCTGATGCTGGATAAACTTGTTAATCGTTACTTGATGATGACCCTCCTCAACGAGTCCAGCCCAAAACATGTGATCCAGAAATGCAAGAAGATCACCAGTTGTTTTCCAAACTCATGGTTTGTGGATCTGAGCTCCGGATCATCTATACCTCAACTTCAGAACTTCAGCAAACACCTGGTTCAGACGACACATTTAATATGTAGAGATAACAAGGACACAGTCAGCTGCAGGACGCTTCTCTCTGATGTGATGAACATTCTTGAGACCATCAGGGCATCTGAGAATATGAAGACTATTGCACGAACCTACAACTGTCAGGATTTACTGGAATCACTTCATAAGTCATAGTTTTATAATgctgtaataaatatatttttgtaactttgaaagaaa

Function

symbol description
gcfc2 Predicted to enable DNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human GCFC2 (GC-rich sequence DNA-binding factor 2).

NR:

description
GC-rich sequence DNA-binding factor 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09061 GCF, C2orf3; GC-rich sequence DNA-binding factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672564.1 True 2597 mRNA 0.49 18 1319419 1329088

Neighbor

gene id symbol gene type direction distance location
LOC107197738 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 coding upstream 1301 1304067 ~ 1318118 (+)
LOC103043042 LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766 coding upstream 116277 1187120 ~ 1203142 (+)
adam12 LOC108436745,LOC108270250,LOC107752796,LOC107697763,LOC107592760,LOC107733079 coding upstream 139782 1038874 ~ 1179637 (+)
LOC103042422 LOC107594852 coding upstream 285853 1015833 ~ 1033566 (+)
eef1akmt2 mettl10 coding upstream 481266 834977 ~ 838153 (+)
LOC103037734 LOC105015678,LOC106588052 coding downstream 140927 1470015 ~ 1479658 (+)
mthfd1 mthfd1,LOC108269612 coding downstream 169034 1498122 ~ 1514730 (+)
plcb2 plcb2 coding downstream 252668 1581756 ~ 1617335 (+)
ankrd63 NA coding downstream 315980 1645068 ~ 1647692 (+)
spint1 NA coding downstream 405533 1734621 ~ 1752108 (+)
G77259 NA non-coding upstream 53345 1265837 ~ 1266074 (+)
G77245 NA non-coding upstream 80613 1238344 ~ 1238806 (+)
G77214 NA non-coding upstream 268477 965814 ~ 1050942 (+)
G77215 NA non-coding upstream 341967 970551 ~ 977452 (+)
G77198 NA non-coding upstream 382186 936248 ~ 937233 (+)
G77375 NA non-coding downstream 15008 1344096 ~ 1345264 (+)
G77376 NA non-coding downstream 16255 1345343 ~ 1349654 (+)
G77373 NA non-coding downstream 39014 1368102 ~ 1368585 (+)
G77399 LOC103037189,LOC108269635,LOC106588122 non-coding downstream 119736 1448824 ~ 1452208 (+)
G77402 NA non-coding downstream 134150 1463238 ~ 1464202 (+)
G77212 NA other upstream 310577 1005129 ~ 1008842 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 383741 883297 ~ 935678 (+)
G77154 NA other upstream 687047 631714 ~ 632372 (+)
G77059 NA other upstream 798829 519633 ~ 520590 (+)
ldah ldah other upstream 1186116 84719 ~ 133303 (+)
G77410 NA other downstream 155582 1484670 ~ 1485050 (+)
c9h15orf52 NA other downstream 199882 1528970 ~ 1563180 (+)
G77471 bub1b other downstream 364268 1693356 ~ 1696981 (+)
zfyve19 zfyve19 other downstream 368877 1697965 ~ 1708297 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 583444 1912532 ~ 2009418 (+)

Expression


Co-expression Network