LOC107197725 (LOC108430641,LOC108269631)


Basic Information

Item Value
gene id LOC107197725
gene name LOC108430641,LOC108269631
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1836789 ~ 1854878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672579.1
CtccctgcgtgtgtgtgtgtgtggtcggTTATGGAGAGCTCGTGCTCCAGTCCGCCTCAGTGACGCGAAGCCTCGGCTGATTGCAGAGAGCCGCGAGCGCGTGCGCCGGTCCCGCTGCGCAGGTGTGAGTGATTAGGAGCGCGTGAGTGCAGGTGCCAGGTTAGCCTCGGTACCGGGTTCAGGATGGGCTGCGCTATATCGGGTTTGGGTTTGGCGCCCAGGCAGGTAACAGAGACCCGCGGGGAGGAGGAGACCCTGAGCGAGGAGCAGATCAGCATGATCAAAGAGTCGTGGAAACTGATCCAGGAGGACATCGCTAAAGTTGGAATCATCATGTTCGTCAGgttgTTCGAGACTCATCCGGAGTGCAAAGACGTCTTTTTCCTGTTCCGGGACGTGCAGGACCTGGAGAGGTTACGGACCAGCAGGGAGCTGCGTGCCCATGGCCTGCGAGTGATGTCCTTCATCGAGAAAAGTGTGGCCAGGCTGGACCAGTTAGAGCGTCTGGACATGCTGGCTGTGGAACTTGGCAAAAGCCATTACCGCTACAACGCCCCTCCAAAGTATTACGGGTACGTAGGAGCAGAGTTCATCTGCGCAGTTCGGCCAATTCTGAAAGACAAATGGACGCCTGAACTGGAAAAGGCCTGGAAGACGCTGTTCCAGTACATCACCCGGCTGATGCGTCAGGGCTACCTGGAGGAGGAGGGGGCCAAGAGGAGCGTACAGGTGTCCACCAAAGAGAGACCAGACAAGAGGAACACAGCGCTGTAGCCTCGGCTAATTCTACAGTCTTCTGTGCAAGTTATGCAGAATGGTGTTCTTTGTAGACAGAGTGTTATGTAcatagtatttatttaattattaatgtttCTTGTAATTTCAAATCATCAGTCTGttcagtgactttttttttgtaaacatcaaaaaaaaaaa

Function

NR:

description
PREDICTED: neuroglobin-1-like

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0016020 membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K21893 NGB; neuroglobin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672579.1 True 936 mRNA 0.53 5 1836789 1854878

Neighbor

gene id symbol gene type direction distance location
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding upstream 5694 1805947 ~ 1831095 (+)
spint1 NA coding upstream 84681 1734621 ~ 1752108 (+)
ankrd63 NA coding upstream 189097 1645068 ~ 1647692 (+)
plcb2 plcb2 coding upstream 219454 1581756 ~ 1617335 (+)
mthfd1 mthfd1,LOC108269612 coding upstream 322059 1498122 ~ 1514730 (+)
dnajc17 dnajc17 coding downstream 232735 2087613 ~ 2146276 (+)
fsip1 NA coding downstream 392173 2247051 ~ 2312662 (+)
LOC103026471 LOC100304858 coding downstream 610432 2465310 ~ 2468562 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding downstream 616520 2471398 ~ 2474791 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding downstream 905792 2760670 ~ 2864439 (+)
G77484 NA non-coding upstream 64876 1757164 ~ 1771913 (+)
G77464 NA non-coding upstream 80723 1695164 ~ 1756066 (+)
G77457 NA non-coding upstream 181274 1654012 ~ 1655515 (+)
G77447 NA non-coding upstream 218462 1578277 ~ 1618327 (+)
G77396 NA non-coding upstream 316794 1517762 ~ 1519995 (+)
G77493 NA non-coding downstream 12217 1867095 ~ 1869007 (+)
G77510 NA non-coding downstream 171812 2026690 ~ 2030616 (+)
LOC103031311 inf2,LOC107678755 non-coding downstream 206235 2061113 ~ 2066854 (+)
G77531 NA non-coding downstream 329991 2184869 ~ 2185952 (+)
G77532 NA non-coding downstream 335444 2190322 ~ 2190664 (+)
zfyve19 zfyve19 other upstream 128492 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 139808 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 273609 1528970 ~ 1563180 (+)
G77410 NA other upstream 351739 1484670 ~ 1485050 (+)
G77212 NA other upstream 827947 1005129 ~ 1008842 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 57654 1912532 ~ 2009418 (+)
LOC103031026 NA other downstream 603567 2458445 ~ 2464321 (+)
G77722 NA other downstream 1045256 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 1467207 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 1910902 3765780 ~ 3824872 (+)

Expression


Co-expression Network