dnajc17 (dnajc17)


Basic Information

Item Value
gene id dnajc17
gene name dnajc17
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2087613 ~ 2146276 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672588.1
TTGTAACCCGGATGTGTTTACAGCGCTGCATGTTTTTTGAATCAGCTGAAGGCTGTTCAGTGTCTgggtttagtattttaatataatagtataatatctGGGTTTAatagttatataaatataaaaatggctTCAGCTAAAGAAATCCTACAGCTGGATCTGTACGCTTTACTCGGGGTTGAGGAGAAAGCGACGGAGAAAGAGATAAAGAAGGCGTACAGACAGAGAGCCCTGAGCTGTCACCCAGACAAAAACCCAGACAATCCGAAGGCTGCCGAGCTCTTCCACCAGCTCTCGCAGGCCCTCGAGGTGCTGACTGACGCCGCAGCCAGGGCTGCCTATGACAAGGTCCGCGCTGCCAAGAAACAAGCGGAGGAGAGAACCCGGAGACTAGATGACAAGAGGAAAAAGATCAAGCTAGACTTAGAGGCCCGAGAGCGACAAGCGGAAGAAGACTCTCAAAAAGTCGAGGAATTTAAAGTCTCACGAACGTTAGAAGAAGAGatCGCCCGTTTGAGAGAGGAGGGATCCCGGCAGCTGCAGGAAGAGCAGAGGCTGATTAGAGAACagatccagagagagagagagggcaggctgcacacacactcagATGCACCTCAGCAATGCAACACCCCTAAATTAAAGCTGAAgtggaaatgtaaaaaagatGACGACACGAACGGCGGCTATTCTCAGGACTTTCTTCAGCGGCTTCTTCAGAAGtatGGAGACGTGTTGAACATTGTGATCTCCAGTAAGAAGAAAGGCAGTGCTGTGGTAGAGTTTGCAACAGTGAGAGCAGCGGAGCTGGCGTGCAAAAATGAGGTGGGTCTGACAGAAAACCCTCTGAAAATTGTCTGGCTGGAGGGACAACCTGAAGCTGCTCCAACAGCACCCAGTCACATGACCCCAGGAATGTTCACACCTTCACAGAATCCTCTGAGCAGTGAGCGGGATTATGAGAGTCTGGTGCTGATGCGGATGAGGCAGGCTGCGGAACGACAGAGGCTGATTGAGCAAATGCAGAAGGAGGACGAGGAGGAAACCTGACCACATCCCTGAGCTGCTTTACTTTCATTAAACGATCCCTCATTACCGTTCTTAAGTTCCTGTCTTTActtttacagtaatttaaatCCTCACAAATCAATAAAGTATTTTCTTTGGTAGAGGA

Function

symbol description
dnajc17 Predicted to enable RNA binding activity. Orthologous to human DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17).

NR:

description
PREDICTED: dnaJ homolog subfamily C member 17

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K09537 DNAJC17; DnaJ homolog subfamily C member 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672588.1 True 1174 mRNA 0.48 11 2087613 2146276

Neighbor

gene id symbol gene type direction distance location
LOC107197725 LOC108430641,LOC108269631 coding upstream 232735 1836789 ~ 1854878 (+)
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding upstream 256518 1805947 ~ 1831095 (+)
spint1 NA coding upstream 335505 1734621 ~ 1752108 (+)
ankrd63 NA coding upstream 439921 1645068 ~ 1647692 (+)
plcb2 plcb2 coding upstream 470278 1581756 ~ 1617335 (+)
fsip1 NA coding downstream 100775 2247051 ~ 2312662 (+)
LOC103026471 LOC100304858 coding downstream 319034 2465310 ~ 2468562 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding downstream 325122 2471398 ~ 2474791 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding downstream 614394 2760670 ~ 2864439 (+)
eif2ak4 eif2ak4,LOC107673787 coding downstream 762333 2908609 ~ 2957430 (+)
LOC103031311 inf2,LOC107678755 non-coding upstream 20759 2061113 ~ 2066854 (+)
G77510 NA non-coding upstream 56997 2026690 ~ 2030616 (+)
G77493 NA non-coding upstream 218606 1867095 ~ 1869007 (+)
G77484 NA non-coding upstream 315700 1757164 ~ 1771913 (+)
G77464 NA non-coding upstream 331547 1695164 ~ 1756066 (+)
G77531 NA non-coding downstream 38593 2184869 ~ 2185952 (+)
G77532 NA non-coding downstream 44046 2190322 ~ 2190664 (+)
G77534 NA non-coding downstream 50734 2197010 ~ 2290008 (+)
G77544 NA non-coding downstream 115710 2261986 ~ 2303830 (+)
G77533 NA non-coding downstream 147013 2293289 ~ 2317480 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 78195 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 379316 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 390632 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 524433 1528970 ~ 1563180 (+)
G77410 NA other upstream 602563 1484670 ~ 1485050 (+)
LOC103031026 NA other downstream 312169 2458445 ~ 2464321 (+)
G77722 NA other downstream 753858 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 1175809 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 1619504 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 2143231 4289507 ~ 4298184 (+)

Expression


Co-expression Network