LOC103032219 (slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804)


Basic Information

Item Value
gene id LOC103032219
gene name slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11577239 ~ 11637984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672726.1
GTCCAGCTGCGTGAGGCTGCAGAATCTGTGGAGAGCCAGGGgtcgtttttacgcacggaagtCTCTCCTTACAGATCAAACATTTGTTATAGATTGCCTGGGCTCTGCTTActttcaccacacacacacacttaaacccTCAGGAGCCCGCGAGCACCGGAGGGTCATGGCTTGGTGAGGAGAAGCGCGTATCGAAACTGGCTGTGCTCGTCGCCGCGTCCGTGCGCCAGGCTCTCTGCTCGCGCAGCTCTCTCCGCGCTCGTGCCCGGGCTGAAGATGGGATTATTTGACGCGTTCCGGGATGTGGGGCTGCTCGCGTGGCTGCGGGAGGGCAGGCAGTCCCGCAGACTCATCCTCCTCATCGTCTTTATTGCGCTGCTGCTGGACAATATGTTGTTGACGGTGGTGGTCCCTATCATTCCCAGCTATCTGTACACTGTGGATGATGCAGCATCCAATGCAGTGAGGAAAAATTCCTCCAGCTCCCCTTCCGGCACCTTCCAGACCATTGTATCTCTGTATGATAACACTACACGCTTGACCAACATCAGCCCGCAGTTCAACACTCCCACCATGCCCCCCACCACGACAGTCACCTCCGCACCCAATGCCTCTAACTGTCCCAAAGCGGATGACCAGCTTCTGAATGAGAATGTGAAGGTGGGGCTCTTGTTTGCCTCGAAGGCCACCGTCCAGCTCATTACCAACCCCTTCATAGGACCCCTAACCAACAGAATAGGCTACCAGATCCCCATGTTTGCTGGTTTCTGCATCATGTTTCTCTCCACAATCATGTTTGCCTTCTCCTCGAGTTACACGCTGCTGTTTTTGGCTCGGTCAATGCAGGGCGTTGGATCCTCCTGCTCTTCTGTGGCAGgtatggGGATGCTGGCGAGTGTGTATACAGATGATGAAGAAAGAGGAAACGCTATTGGAATTGCACTGGGTGGACTTGCTATGGGAGTGTTGGTGGGGCCTCCGTTCGGCAGTGTAATGTATGAGTTTGTGGGGAAGACGGCACCGTTCCTGATCCTGGCAGTTCTGGCAGTATTGGATGGAGCTCTGCAGCTATTTGTACTTCAGCCTTCAAAGGTGGAGCCAGAGagtCAAAAGGGAACATCTCTTATGACCCTCATGAAAGACCCTTACATCCTTATTGCTGcagGCTCTATATGTTTCGCTAACATGGCCATCGCAATGCTGGAGCCTGCCCTGCCCATCTGGATGATGGAGACAATGTGTGCCAGAAAGTGGCAACTAGgtgtgGCGTTCCTTCCTGCCAGTGTCTCATACCTGATTGGAACGAACATCTTTGCAGTGCTGGCGAATAAGATGGGAAGatgGCTGTGTGCTCTTATAGGAATGCTGCTGGTTGGCATCAGTATTCTCTGTGTGCCTTTCGCAAAGGACATCTACGGACTCATACTGCCAAACTTTGGGGTTGGTTTTGCAATTGgcaTGGTGGACTCCTCCATGATGCCAATCATGGGGTACCTGGTGGATCTGCGTCACATCTCTGTGTATGGAAGTGTGTATGCGATCGCTGATGTGGCCTTCTGCATGGGCTTTGCATTTGGGCCCTCGGCTGGTGGAGCTATAGCACGCAGCATTGGGTTTCCCTGGTTAATGACCATCATTGGCATAGTGGACATCCTATTTGCACCACTTTGTTTCTTCCTCCGCAGTCCACCTGCTAATGAGGAGAAAATGgcCATCCTGATGGACTCCAACTGTTCAATGAGAACACGTTCCTACTCTACCCAGGGGTCCAGTTATCAGATGGGGGACGATATGGACCCAGACAGTCCAGAGTAATTAAAACccagcccccccccctcccttttGCTCCGACACATAACTCCCCATGAGCCATGTATGTGCCCTTCTAGGTTCTATTTTGTTGTATTGCAGAAGGAGTGTGGGGAAACAGAGACTTTATAAGAACCAAGTGGCTGATTTTGTGAGAAATGTCCCAGTGTTTGTCCGGCGCCGCTCTGTGACGTTAGCATTCGTCTGTTCTGCTTAAACCAAAGCCGTTCTCATTGTCCTTTAAACACATCCAGCCGACAGCCttacctgtacacacacactcacacacagtccTGGCACCGGCCTTCGGAAACAGGGTCTTAACCACTAAAGCCACAAACAGGGATAAGCTACGACCAGATCACCTTCAGAAAGTGGAGCTATGTgaactccacaagacctctgaaggtgtaCTATTTACCTGGCACTAACGTGAGCAGCGCATTCTTTGGATCTCCTAAGTTATGAGGTGGGCACCTTTGAGCATCAGAACATGACAGATTTGTCAAAATGGCTCAGATTCAACTTCAAGAATTGACTGCTCATTCTCTGCCTAATATATCCACCCTCAGCCACAAGCAGATCGTCagtattatttactttatatgtTATCCTTTACTTTATAGGCAAATTATTTACAGGGCCTATTTTATAAATACACTGGcattccaaaagtcatgggacaactGTGTGTGTAAACTGATTATAAATTGGTACCTCAGGAGGTGGCTTGGGAGTGCCCACACattttgtgaggtgttatcttgtgagtgaggttggtTAAACACTGAATTATGAGATTGAGTGAGGCCTGGGTGCCAgaggatgggacattccatttgcAAATTACATgtcataaaaggcattaccaccctcAGTGGACAGCATCAGGTGGGTAGTGATCGTGACCAGTGTCTGGCTAAAAGTGTCTGTGTTGACAGACAATCAACTCATCCACATTAAATGCAGAAGCCCCCACACACATATTCCACTGGTCAGTGTTATGTTATTTAGTGTCCATGGAATATGACACAAACCTAGTGTCAGCTTACATTACATTCAGTATGTCAGtgtcaataataattaaacatatacagTTTACATTTCTGTGCCTTTTAAACTGACATATGTAAATaacctctgttctgattggctgccctgtTTGTGCCTTGTTAAAAAATGCAGTCCAGGCTGAAACACTGCTTATAATGTATAACATGGGTGGGAGGAGTTACAATGTAAATGTGTTGGTCGCACAGGTTTGTGACCTCACATAAgcaatgcattcattttcaagtttttttttatgtaaagagTGTAACGATATGCAAAGGTTGAAACCTGTTGCAGTTTATACTAGTATAATGCATCTAGTGTTGTGTGATAGAatcactttaaaacatttaaatctgCTATTCCAGCTAAGCACCTGAGAAAAGGCTGCCAGTTTGTCGTCCTTAAATCCCTGATTGTGGCTTTAAAATCCGAACATCATGGGTACCTGTACTtctgtagcatcacagtgcacaggGTTATGTTTTGTATATCAACATTTCTAGAAGACATTAAGATGACCTGGCTAAAGCGAACCATTAGATGTGAAGAAACAACTTTAGAAACCTCGAAATTAGTTACATTATGTAAATTAAGTGTTTGCATGTAAGTTTGTTTTCTTAAGACGGCTGAAATGGATCACATTTTACCTTGAAATGGCCTTAAAGTGTTTCCTTTCCATAATCAGAGGTGGCTGTCCTCTGACAGTAtggtaccttttttttaaaacatgagtGGACGGTACGGCAGAGGGCCTTAAAATGAAAAGCTCACACCTGGGAGCTTCTGCAGCTTCACCTGGTGGATTGGTTATAGTGCTGTCTGTTCAGGGTGAACGCCTCTGATTTAGGATGTTCACATTGTGTTAATGAGAATGACACTTGCAGATGTGTTTGAGCTGTTTGAAGAGAATATTCACTGAACAGAGTCGTTCCTCTTTAGAAAAATTATGGAAAACATTGCTTAAAAGATCACTATGGAGCATGCTGGGTGCATTTTACAGATACATCAAACTGATATTCTAAGACTGGgtgaaattgtaaaaaaaaaaattctcactattctttaaatatataagttaTTCTTAATTATGATTTTAGTAGTTATTTGTAAACAGACAGTCTCATGTAAAATAtctaatattacattacattactaaaatatctaaatttacaaaaacataAGTCAGGGCCATGGGCTTTTTGTCTTCAAAAAATTAGTTTATATTTGTAAACAGACAGCATTACTTTCCTTGTACATTTCTCGATAATCCCATgttgaaaattgcattaaaacagtaatgtaattattccaaataatttaattaatatccCAAAGAACACAATTTAAAATCCCAGGGCCATGCAGCTCTACCTTCAGCATCCGGAGCCTGAGAGAGCATAGCTGGCACAACTGGCAAACTCTGGGGGGGTATTGCATTGcaagtgatgggggagtcctagtgagtgggagAGTTAATTTTGTTTGTGAACAATTACTGTTACTAATAAAATTTTAGCATTTTGATATGTAAAAATAACTCAGTAAAATGTAACTCAGATAAAttgaaatgtaaattaaaatgtatcaaGGTGATATATCAACATAATAAAGAGAACAATTAATAGTTCAAATAAATCATCAAACTAAATCTATTTTAGTATATAATTGATATTTTAACCCCAAAAATGGTTATCAGTCCCTTAAATCCATCCCCACAATGGTGACAAaccatgttcatttttaaaatacagctgTAAAGTATCTTCCTACAATACCTCAGCTTGTtagagtgtattttttttatttagtaagtgtataaagcatatatatatatatatatatatatatatatattatatatatatatatatattaatacatgcTGTATTTACTCTTAGTAAATACAGCAAATTAGTAAATACtcttagtaaatatatattaatacatgctgtattctgtatttactCTTAGTAAATGTCTACTTagttttgttaaaatatatatttgtttaaaacatgttcaggtgtacaatattttaaacagacACCCTAAACTGAGGCTCTTAAAAAGCTGTTGTAACCCAGCATCTCCATGACGATGTGCTTCAGGTGCTCTGCTCCTCATGCGATTTCTGAACTCGATGGCCTTATGATAGCTTCATGCTTCCTGTACGGCTGGAGCTGCAGAACAGGAGGTCTGAAAAAAGGAAAGGTGTGATATGATTATAGTCAGAGTCTTAAACAACAGCACATCCACCATATTGTAATCAGATCACCCGAATGCAGCCAGTGGCCAGTGCAGGCCTGCCATGTGCTCCTCATTCACTTCACCTGTGGAAACTCCGCTATTACACACCTCTCACACTGCAAACAATATTTTCAATCATATGAAGCCAATTTGGTTGGAGACAAATGAAGACAGTATGTAACAGGCTAGTTCTATGAACCACAGGTTTAGCAAAATTAGGAGGAAATGGAGGAAATTCATTTGAAAAACTCCacctgtatttgtattttttatttaccagCATTGCAAAATATGGGCTGAATCACACACCATAAACCAGAGACTAAATACTGATCCTAATAGTGTGGCAGAATAGTCACGTGCTAGCCTATTTTAAACAGCCCCAgagttttttttgcagatttatTTCTACACTCTATGATTTTTACTGTCTAAAAAATGGTTTTTTCAGGACTAACCttcccattattattattttttttctctaaaccATCAAATTTTTTATTTCCCCCACAAAGACCAAGTCAATAAAATATGTATGGGCATGTATtattctaaatataaaaaatatgtttgaaatatatttgaaatgtttttttcacatataAAGTAACACATGCCAATATATTGTGTTTCTATGTGAAGTACTATCATCTCACCATTTGCTACATAAAATGCTTCCAAAATAAATTTGTACAATGACACTGGAAATATAACCttcaaaatataaaagtgtGAAGTAGTGTGGGCTAGCTTTTAGCTTTGATATTGTATTAACTATTCCAATCCTGGCTCCTTAATGACCGTGTTTTTCATAGGATTCAGGGGCATTCAGAgaacaaatgtacaaatgtataaGAAATATGTCCAATGTGCATTATCTCAAGTTTTGGCGTGATTGCGTAATTGTCTGTCAGGTAGTTACATTTCGCAGATTATGAGTGTGTGAACTGCCTGACACGCATGTGTCTCATGCCCAATTCATGAGACTTGAGAGCTGTATGAAGAAATGCTAAGCGCAGATATGTACTATATCTTAAAGTTAAgcattattaaattacattcaaCATGACAAAACTAAATCCATACTGCCCTTCAAAAGTATTTGAATGGAGAGGCCGATAACAttgtttctgctgtagactgaaaatttgtgtttgatattaaaagatgaatatgtaACAATAGATCGACATttcagttttaatattttatacatatttatatctaaatctgatacacagttcagaagatagtaccttctgtctgaacccacctaTTTTTCTTTGTGAGCAAAAGTgttggaacatgtgactgtaaggtgtgttttgttgcccaggtgtgtcctcATGCACTCCCATGGGACAGAATTTTAATCGGACAGCTTTACAATTTCATGCAGTTTCTGTGTGTGGGAGAACTCACAGATTCACACAATTATCATTATAAATACAGCATCCTGAGGCTCACCTCCCAATTTCTCAGCAGTTCACACCTGTAAGAATAAACACTGTTGTgtaatttatttctgttttgtatcTCTGAGGTCTGTCTCGAGGTGGTGAACGTGTGTGTGCCTATGTTGGTGTGTGCCTTCATATATATCTGTCCTCTGTTTTTGTGTATATTACGTATCTCCTTCCATGCAGTGCAAGGACGTTTCAGCAGTTTTATATCCTGTATAAGGTCCTGTAGTCAGGATTCACACTGTCAGATTTACAGTATGTAACTCTATGAGGTCCATGTAAGTACTTGGTgggacaaataataataaaaaacatgaataaagaaATCAATAAATGTTG

Function

symbol description
slc18a2 Predicted to enable serotonin:sodium symporter activity. Acts upstream of or within swimming behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane and terminal bouton. Is expressed in brain and neurons. Used to study anxiety disorder. Human ortholog(s) of this gene implicated in Parkinson's disease and type 1 diabetes mellitus. Orthologous to human SLC18A2 (solute carrier family 18 member A2).

NR:

description
PREDICTED: synaptic vesicular amine transporter

GO:

id name namespace
GO:0015893 drug transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08155 SLC18A1_2, VMAT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular amine transporter), member 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672726.1 True 6917 mRNA 0.41 15 11577239 11637984

Neighbor

gene id symbol gene type direction distance location
LOC103024809 LOC107689792,LOC105902344 coding upstream 812525 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 910565 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1215194 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1240523 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 1284946 10282665 ~ 10292293 (+)
pex13 pex13 coding downstream 172249 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 248252 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 364809 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 516939 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 550774 12188758 ~ 12261237 (+)
G79659 NA non-coding upstream 17130 11559780 ~ 11560109 (+)
LOC111193197 NA non-coding upstream 30465 11546280 ~ 11546774 (+)
LOC111193196 NA non-coding upstream 31222 11544676 ~ 11546017 (+)
G79643 NA non-coding upstream 40916 11535792 ~ 11536323 (+)
G79640 NA non-coding upstream 44375 11532334 ~ 11532864 (+)
G79683 NA non-coding downstream 53832 11691816 ~ 11692164 (+)
G79684 NA non-coding downstream 62696 11700680 ~ 11702374 (+)
G79692 NA non-coding downstream 109060 11747044 ~ 11747579 (+)
G79694 NA non-coding downstream 135706 11773690 ~ 11784149 (+)
G79695 NA non-coding downstream 141840 11779824 ~ 11784827 (+)
G79654 NA other upstream 22100 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 762325 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1020371 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1622201 9883006 ~ 9955038 (+)
spata17 NA other upstream 2022514 9495449 ~ 9554725 (+)
G79717 NA other downstream 263111 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 426860 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 585293 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 2083917 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 2287885 13925869 ~ 13952198 (+)

Expression


Co-expression Network