LOC103026899 (p4ha1b,LOC108433345,LOC107671120,LOC108270445,LOC107668593,LOC107553883,LOC107750858)


Basic Information

Item Value
gene id LOC103026899
gene name p4ha1b,LOC108433345,LOC107671120,LOC108270445,LOC107668593,LOC107553883,LOC107750858
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13207448 ~ 13233703 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672744.1
AGCGGAGGAGCGGAAGACGCTCCCGAGCAGATAAATGGTGGAAAGCCGCGCGAGAGAGACAGCAGACAGACAGTTCTGAGAAGAAGAAGCTCCGGATCTGGAAGAGGATTCTCAGGGGCAGTGACTGACAGCTGTGAAGaatgGCGCTGTGTTTGGTGGTATTGGGTTTGTTCCTCCAAACTCTCCACGCTCATGTTGACTTCTTTACCTCCATTGGCCAGATGACTGACCTGCTGTACACAGAGAAAGACCTGGTGACATCATTGAAAGATTACATCAGAGCAGAGGAGAGCAAACTGCAAGAGGTTAAACAGTGGGCAGAGAAGTTGGATTCTCTGACCTCCACTGCAGTGCAGGATCCCGAGGGCTTCCTGGGGCACCCGGTCAATGCCTTCAAACTAATGAAGAGACTCAACTCTGAGTGGTCTGACCTGGAGAACTTGGTCCTTAAGGATACCACTGATGGGTTCATCTCTAATCTGACGGTGCAGAGACAGCACTTCCCCACGGATGAGGAccaaaccggagcagctaaagcTTTGCTGAGACTGCAGGACACGTACCAGCTGTCCTCCAGGGCCATCTCTGCTGGAGACCTGcctgGTGTCATCCATAAAAGCCGCATGACGGTGGAGGACTGTTTCGAGCTGGGCAAGATCGCCTACTCTGATGTGGACTATTACCACACCGAGCTGTGGATGACTCAGGCTCTACATCAGCTGGACGAGGGCGAGGAGTCGCCCATAGACAAGGTGACCGTCATGGACTACCTTAGTTACGCAATCTACCAGCAGGGAGAGATCGACCGGGCGCTGGAGCTGACCAAGAGGATGCTCAAACTGGATCCCACTCACCAGCGGGCCAACGGGAACCTGAAATATTTCGAGTTCCAGCTGGAGAAGCAGAGGAAAGCTGAGGAGGAAGCAGGAAAAGAGGcacagaaagagggagagaagaaaCATATGGATAAGCGTGACGTGCAGATGAAGCGCTCCAAAGACCCGCTGCCCGAGAGGAAGAAATACGAACAGCTCTGCAGAGGAGAAGGAatcaaaatgACCCCTCGCAGATGGAGCCGCCTGTTCTGCCGTTACCAGGACAACGGACGCACCCCTAGTTTGATACTGGCTCCTGTGAAGGAGGAAGACGAGTGGGACCGTCCCCACATTGTCCGCTTCCACGACATCATCTCCGACTATGAGATCAGCAAGGTTAAAGAGCTCGCCAAGCCACGGCTTCGGAGGGCCACCATATCTAACCCCATCACGGGTGTGCTCGAGACCGCCCCCTACAGGATCAGCAAGAGTGCTTGGCTGACGGCGGATGAGCACCCTGTAATTGAACGGATAAACCAGCGCATTGAGGACCTCACAGGCCTGGAAATGGACACAGCAGAGGAGCTGCAGgttgCAAACTATGGAGTTGGTGGACAGtatgagcctcattttgactttgGCAGGaaAGATGAGCCGGACGCATTTAAAGAGTTGGGCACGGGAAACAGAGTTGCCACCTGGCTCTTCTATATGAGCGACGTTTCAGCAGGTGGCGCCACAGTATTCACAGATGTTGGAGCTGCAGTGTGGCCCAAAAAGGGCACAGCAGTATTCTGGTATAACTTGTTTGCCAGTGGGGAGGGTGACTACAGCACGAGACATGCGGCCTGTCCGGTACTTGTGGGCAACAAGTGGGTATCAAACAAATGGATCCACGAGCGAGGTCAGGAGTTCCGGCGACCCTGCGGCCTCAGCGAGAATGAATGATGAACGGAAACTCtttcctcctcatcctccattcctcctccctCATCCCTTCATCCTTCGAAGCCCCGAGGTGCCGGTTAGCTCGGCATTTGTGGACACTGACAGTCTTCCCCCACTACCCACGGTGTGAGGTTTTTGCATAGACTATCTCTCTCTGGTCCCCTGACTGACCATGAGGGCGTGGCAACCCAGTCGAACAACAGAAAAGTGATTCTTTGACAAAAAATCAAATGCGAAAGAGTAGATAACTAAAGTAGCTAAAACTAAGCTGAAATTTTATCATGTTACACAGGCTACATTCACAACAAGCCTCAGTCAATTCCAATTTTTTGCTCAAatcggatttggctatcttgacggttcacagtcgtaaatataatttatgacctgtatctgtctgtAATTTGAACAAATATGCCCAAGAAATGGCACACATGcttacattaatacattaatgcaAGTGACCTCTTTTGTAGTTGTACACAAATCAGTATAAATCAGCATCTTGTCTTGGAATATAAGTAAAagtggctcaaatctgatttaaacagATCCGATTTGACACGTTCACACAGTCCTGAAAAAAACTGATCTGTGTCACACTAAGCCAAAAAGTCAGATTTGAGTCGCTTCActctggtaatgtgaacgtagccataaGTGGAATAAAGTGTCAAACATTATGTAACAGTTTCGTCAAACCAAAGCCTTGTATCTCAATTTTCACTGACACAAATGTACACACAAACTCAGGAATGTAGTGTGGACTAACTGTAAACTATAACGGTTACTGTTTACAGTGCACACAGTGAGCCTGAATAACTCTGGGTAATGATTTTAAATTTCTTTAGCATTTTATGCATTTCCAAGATCTTCAGTTTCTCAAAAATCTCCAAATTCTCCAAaggcatttttctttttcctgctttttcagctttaattttaaacttttctattagtgcttttccaccaaaagaactttGATTGTTAAACCAGTTCTGTTTGCGCTTATAAGAACCATGGTGCTTTTCAGCAAAATAGCTTGCATTTCCAACAGTTTTAGTTTAAGCTGTGAAAGAACgttcctacttttgttggtggaaatgcaGCAAACAGGTTAAAAATTAGGTTTGCGAACCAGAATGGTACCGCTTCCACtttggtggaaaagtgctatGTGTGACTTTATGGTTCTTCCTTAGCATTTGTATCATCTCCAGTGCCTCCTAACTACTCCAAACTTTAATAATATCTGGTTAAGGTGCAAAATGGGTAAGGCCCACATAGTAGCTCCAGTAAGTGGTACTTGAATGTTTTGGTTTGATCAGAGATATATTTTAGAGATATAAGGTTTTGTTTTGACTGAAATCAAGTCTGTTGAAAAGAAAACAGTGCTGTTAGCTGCTTTAGCCTCGAATCAAGAGCCCATACATGTCTTTGCTAATTGACTATGTTTAGGTTAAGGATGGAGGAATTGTGTACATTTGATTTTTTGCTGAATTGTTGCTTAATAGATTTTAAGTATTTGCACTTTGGTTTTAGAGCAGGGAAACGCCATCAGGCTACAAACATGAACCTTTTAGTTTGAATCTGATCAGGTCTATAACCACTGAAACATCTGAGCTCTCCAGACTACGCTCAAAACGGAGGAGGAAGAGCGACCCCGACTGCCTCAACATAAATAAGGGTTTTCACTTTTGACCAAACGCTGCATAAATCTTACTGAACTTTTCCAAACAAACACTCCTGACATGACCAAAGTAGAACGCCAAAGAGATTGTTGTTAAAACATTTCTGGggccaaatacattttttttatttatcttcacCTTTTTTGTGAGCTTTTGTGTGTATGGAAGTATGTTTTTGAACGTGCAATGTTTTCTacggaaataaaaaaaaatactgtgccAAACA
>XM_022672745.1
GAGCGGAGGAGCGGAAGACGCTCCCGAGCAGATAAATGGTGGAAAGCCGCGCGAGAGAGACAGCAGACAGACAGTTCTGAGAAGAAGAAGCTCCGGATCTGGAAGAGGATTCTCAGGGGCAGTGACTGACAGCTGTGAAGaatgGCGCTGTGTTTGGTGGTATTGGGTTTGTTCCTCCAAACTCTCCACGCTCATGTTGACTTCTTTACCTCCATTGGCCAGATGACTGACCTGCTGTACACAGAGAAAGACCTGGTGACATCATTGAAAGATTACATCAGAGCAGAGGAGAGCAAACTGCAAGAGGTTAAACAGTGGGCAGAGAAGTTGGATTCTCTGACCTCCACTGCAGTGCAGGATCCCGAGGGCTTCCTGGGGCACCCGGTCAATGCCTTCAAACTAATGAAGAGACTCAACTCTGAGTGGTCTGACCTGGAGAACTTGGTCCTTAAGGATACCACTGATGGGTTCATCTCTAATCTGACGGTGCAGAGACAGCACTTCCCCACGGATGAGGAccaaaccggagcagctaaagcTTTGCTGAGACTGCAGGACACGTACCAGCTGTCCTCCAGGGCCATCTCTGCTGGAGACCTGcctgGTGTCATCCATAAAAGCCGCATGACGGTGGAGGACTGTTTCGAGCTGGGCAAGATCGCCTACTCTGATGTGGACTATTACCACACCGAGCTGTGGATGACTCAGGCTCTACATCAGCTGGACGAGGGCGAGGAGTCGCCCATAGACAAGGTGACCGTCATGGACTACCTTAGTTACGCAATCTACCAGCAGGGAGAGATCGACCGGGCGCTGGAGCTGACCAAGAGGATGCTCAAACTGGATCCCACTCACCAGCGGGCCAACGGGAACCTGAAATATTTCGAGTTCCAGCTGGAGAAGCAGAGGAAAGCTGAGGAGGAAGCAGGAAAAGAGGcacagaaagagggagagaagaaaCATATGGATAAGCGTGACGTGCAGATGAAGCGCTCCAAAGACCCGCTGCCCGAGAGGAAGAAATACGAACAGCTCTGCAGAGGAGAAGGAatcaaaatgACCCCTCGCAGATGGAGCCGCCTGTTCTGCCGTTACCAGGACAACGGACGCACCCCTAGTTTGATACTGGCTCCTGTGAAGGAGGAAGACGAGTGGGACCGTCCCCACATTGTCCGCTTCCACGACATCATCTCCGACTATGAGATCAGCAAGGTTAAAGAGCTCGCCAAGCCACGGCTAAGACGCGCCACAGTTCATGACCCTATTACGGGaaaactcaccactgctcagTACAGAGTCTCCAAAAGTGCTTGGCTGACGGCGGATGAGCACCCTGTAATTGAACGGATAAACCAGCGCATTGAGGACCTCACAGGCCTGGAAATGGACACAGCAGAGGAGCTGCAGgttgCAAACTATGGAGTTGGTGGACAGtatgagcctcattttgactttgGCAGGaaAGATGAGCCGGACGCATTTAAAGAGTTGGGCACGGGAAACAGAGTTGCCACCTGGCTCTTCTATATGAGCGACGTTTCAGCAGGTGGCGCCACAGTATTCACAGATGTTGGAGCTGCAGTGTGGCCCAAAAAGGGCACAGCAGTATTCTGGTATAACTTGTTTGCCAGTGGGGAGGGTGACTACAGCACGAGACATGCGGCCTGTCCGGTACTTGTGGGCAACAAGTGGGTATCAAACAAATGGATCCACGAGCGAGGTCAGGAGTTCCGGCGACCCTGCGGCCTCAGCGAGAATGAATGATGAACGGAAACTCtttcctcctcatcctccattcctcctccctCATCCCTTCATCCTTCGAAGCCCCGAGGTGCCGGTTAGCTCGGCATTTGTGGACACTGACAGTCTTCCCCCACTACCCACGGTGTGAGGTTTTTGCATAGACTATCTCTCTCTGGTCCCCTGACTGACCATGAGGGCGTGGCAACCCAGTCGAACAACAGAAAAGTGATTCTTTGACAAAAAATCAAATGCGAAAGAGTAGATAACTAAAGTAGCTAAAACTAAGCTGAAATTTTATCATGTTACACAGGCTACATTCACAACAAGCCTCAGTCAATTCCAATTTTTTGCTCAAatcggatttggctatcttgacggttcacagtcgtaaatataatttatgacctgtatctgtctgtAATTTGAACAAATATGCCCAAGAAATGGCACACATGcttacattaatacattaatgcaAGTGACCTCTTTTGTAGTTGTACACAAATCAGTATAAATCAGCATCTTGTCTTGGAATATAAGTAAAagtggctcaaatctgatttaaacagATCCGATTTGACACGTTCACACAGTCCTGAAAAAAACTGATCTGTGTCACACTAAGCCAAAAAGTCAGATTTGAGTCGCTTCActctggtaatgtgaacgtagccataaGTGGAATAAAGTGTCAAACATTATGTAACAGTTTCGTCAAACCAAAGCCTTGTATCTCAATTTTCACTGACACAAATGTACACACAAACTCAGGAATGTAGTGTGGACTAACTGTAAACTATAACGGTTACTGTTTACAGTGCACACAGTGAGCCTGAATAACTCTGGGTAATGATTTTAAATTTCTTTAGCATTTTATGCATTTCCAAGATCTTCAGTTTCTCAAAAATCTCCAAATTCTCCAAaggcatttttctttttcctgctttttcagctttaattttaaacttttctattagtgcttttccaccaaaagaactttGATTGTTAAACCAGTTCTGTTTGCGCTTATAAGAACCATGGTGCTTTTCAGCAAAATAGCTTGCATTTCCAACAGTTTTAGTTTAAGCTGTGAAAGAACgttcctacttttgttggtggaaatgcaGCAAACAGGTTAAAAATTAGGTTTGCGAACCAGAATGGTACCGCTTCCACtttggtggaaaagtgctatGTGTGACTTTATGGTTCTTCCTTAGCATTTGTATCATCTCCAGTGCCTCCTAACTACTCCAAACTTTAATAATATCTGGTTAAGGTGCAAAATGGGTAAGGCCCACATAGTAGCTCCAGTAAGTGGTACTTGAATGTTTTGGTTTGATCAGAGATATATTTTAGAGATATAAGGTTTTGTTTTGACTGAAATCAAGTCTGTTGAAAAGAAAACAGTGCTGTTAGCTGCTTTAGCCTCGAATCAAGAGCCCATACATGTCTTTGCTAATTGACTATGTTTAGGTTAAGGATGGAGGAATTGTGTACATTTGATTTTTTGCTGAATTGTTGCTTAATAGATTTTAAGTATTTGCACTTTGGTTTTAGAGCAGGGAAACGCCATCAGGCTACAAACATGAACCTTTTAGTTTGAATCTGATCAGGTCTATAACCACTGAAACATCTGAGCTCTCCAGACTACGCTCAAAACGGAGGAGGAAGAGCGACCCCGACTGCCTCAACATAAATAAGGGTTTTCACTTTTGACCAAACGCTGCATAAATCTTACTGAACTTTTCCAAACAAACACTCCTGACATGACCAAAGTAGAACGCCAAAGAGATTGTTGTTAAAACATTTCTGGggccaaatacattttttttatttatcttcacCTTTTTTGTGAGCTTTTGTGTGTATGGAAGTATGTTTTTGAACGTGCAATGTTTTCTacggaaataaaaaaaaatactgtgccAAACA

Function

symbol description
p4ha1b Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human P4HA1 (prolyl 4-hydroxylase subunit alpha 1).

NR:

description
PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672744.1 False 3680 mRNA 0.46 15 13207449 13233703
XM_022672745.1 True 3681 mRNA 0.45 15 13207448 13233703

Neighbor

gene id symbol gene type direction distance location
ecd NA coding upstream 43857 13151249 ~ 13163591 (+)
arhgef33 arhgef33 coding upstream 123239 13065942 ~ 13084209 (+)
morn2 morn2 coding upstream 144486 13055932 ~ 13062962 (+)
LOC103021501 NA coding upstream 186346 12989731 ~ 13021102 (+)
LOC103047786 NA coding upstream 220847 12971431 ~ 12986601 (+)
LOC103024106 actn2b,LOC103024106,LOC108433346,LOC108270464,LOC107552853,LOC107668621,LOC107084685 coding downstream 3502 13237205 ~ 13268832 (+)
LOC103027186 LOC108433299 coding downstream 40885 13274588 ~ 13397644 (+)
LOC103026792 LOC108431631,LOC108270417,LOC107668606,LOC107750856,LOC107717089,LOC107579247 coding downstream 250863 13484566 ~ 13719618 (+)
zmpste24 zmpste24,LOC107654896,LOC107583569,LOC107715979,LOC107670834,LOC107583239 coding downstream 856753 14090456 ~ 14102426 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding downstream 873916 14107619 ~ 14110827 (+)
G80205 NA non-coding upstream 60309 13146257 ~ 13147139 (+)
G80202 NA non-coding upstream 63955 13143085 ~ 13143493 (+)
G80197 map4k3,map4k3a non-coding upstream 82854 13122362 ~ 13124594 (+)
G80189 NA non-coding upstream 113384 13090945 ~ 13094064 (+)
G80186 NA non-coding upstream 156448 13049795 ~ 13051000 (+)
G80227 NA non-coding downstream 39103 13272806 ~ 13273059 (+)
G80319 NA non-coding downstream 132869 13366572 ~ 13367091 (+)
G80359 NA non-coding downstream 229672 13463375 ~ 13490214 (+)
G80386 NA non-coding downstream 427697 13661400 ~ 13661795 (+)
G80388 NA non-coding downstream 453322 13687025 ~ 13737100 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 927942 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 1131237 12064844 ~ 12076211 (+)
G79717 NA other upstream 1302063 11901095 ~ 11905385 (+)
G79654 NA other upstream 1652309 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 2392534 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 488198 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 692166 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1279707 14513410 ~ 14534923 (+)
G80648 NA other downstream 1492224 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1496805 14730508 ~ 14798604 (+)

Expression


Co-expression Network