LOC103027375 (LOC108431653)


Basic Information

Item Value
gene id LOC103027375
gene name LOC108431653
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14495258 ~ 14511030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672759.1
TGAGCGCCACTCCGGCGTGCACGAGAGCAGCGGACACCAGGGAGGTCCCTGCGCACGTGGGTGCGTGTGTTCAATCTAGCCCCTGTGTGGTCCAGCTGAGGCCATGGCTTCGTCTCTGGATGGCGGCTGGTCCTGGGTCATCGTGCTGGCCTCCTTCATGGCCCAGCTGCTGGCGTTTGGCTCGCCCCAGTCGGTGGGAGTCCTGTACCCGGAGTGGCTCAACGCCTTCCATGAGGGCAAGGGCACCACCGCGTGGGTGGGCTCCCTGGTGTCAGGAGTGGCACTCATTGCAAgtccgCTGTGCAGTGCGTGTGTGGATAATTTTGGTGCTCGGCCGGTCACTATCTTCAGTGGAGTGATGGTGGCGGGGGGGCTGATGCTCAGCGCCTTCGCTCCTAACGTCTCCTTCCTCATCTTCTCCTACGGCATCGTCGTCGGAATGGGCTGTGGTCTTGTCTATGCAGCTACTCTGACCATCACCTGTCAGTATTTTGACAAGAGGCGTGGCCTCGCACTGGGCATTGTTACCACAGGGACCAGCGCCGGGGGCTTTCTGTACGCCACAGTGCAGAACGAGCTGATTGAGCTGTTCGGATTGGACGGCTGCCTGCTGATTGTCGGCGCTCTGGCTCTGAACCTGATGGCATGCGCCGGCCCCATGCGCCCCTTAAACCTTCCTGGTTATTACCTCAAACAGAAGGCCGCTCTGGAGCACAAGGACGGACCACTCTACGAGAAGCCCATCGTCATCATTGACTCCAGTGCCACGGAAAGCTCCGCCCACAAGTCACCAGTAAAGGAGCTCCTGATTTCAATGGAGACTGGCGAACCGGGGGCAGAGCCTGTGTGTACTCAAGTGGTACGGGTCATCAAAAGGCGCCTCCGGCCGCAGGTGGAATACCTTCACACGATGGGGGAATATTTCCAGGACCGCACCTTCACGGCCTTCTGCATCTCCTTATTCCTCTTCAGCCTGGGAGCTTTCCCACCTGTACTGTTCATGGAGGACGTGGCCCAGAGCGAGGGCCTCATTGAGCATGTGGCCATCATTCCACTTGTTTCCATAGTTGCCTTGGCAACCGGAGTGGGCAAGTTGATTCTCGGAGCCCTGGTGGACATGAGGTGGGTGAGCGGCCTGCTCCTCTATGCCCTGACGGTAGTGGGCACTGGTGTGGCGCTGCTGCTGGTGCCAGGGTGGAAGAGCTACCTGGGACTGCAGGTGCTTTCTGCTGCTCTCGGCTTTTTCTCGGGCAACTGGTCGCTCACGTCCTACATCACCACTCGCATCGTAGGCATCGAGCGCCTCAGCCAGGCTCATGGTGTCCTCATGTGCTTCGGGGGCTTTGGGATCATGTTGGGACCTCCTGTCGTAGgCTGGTTCTACGACTGGACCCAGTCATACGACCTGGCGTTCTACTTCAGTGGGTGCTGTGTGGTGCTGGGAGGCCTGATTCTGTTTCTGGCTGCCCTGCCCTGCTGGGACCAGAGGGAGAAAGCGAGGAATGTTCCTGAGATTGATCCAGATAAACAAAACCCATCTGACTGTGATAAAGTGGCTTCTGTGGCCTGAAGTGCAGGATCAGCCAAGTACACACTTCAGACTTAGCCTAATTATAGTCAGTCCAACCATGCTTGGTGCAGGGCTCCCGAGTGGGGTGACTGTCTAAGCGCTTGGTCTGTCTAGGTATCACTGGGAGATCATCGGTCAGTCTTTAGTGATGCCACAGCCCTCCGTGACTGGGAATCGCAGAGAGCATAACTGGACTCACAGCTTTCAGATTCTagtactgcttttggatttgtCTGTAtttctattacatttattagctttatcTCCAGTTTAGCTCCAGTGTAAAACTAAACACACAGCCTATGTATTTTCAAAcagctgtgtgatttttttttttttttttttttttggctaaacCACAAAAGTTTAGAGTAGCACTGGAGCCTGCCCTCTAGCCCTGACCCTTTCCTTATTGCAATGCCTTACTGCAGCCAAATAGTTCAGTATATATTGCAGTATACTGTAATGCTTTAAtttatcttctttctttctttatttcttgctTTACCAGTAAGCCTGGCTAGCTCTAGCTAGACAACTCTTTTTCAGTGCCAGATTTGAccagagaaacacacaaacagactgATTTTTCACTGATTTTGAATGCaatttgtatgtgtttgtatagTTTCTAGagatgttttaattttagtatGTATCTATTTTATGTATCTCGTAcctgtaaactaataattactGCCTCATTTATGGAGGCCCATCAGCAGTGGCAACAGTGTACTAGTAGTCAGTTAGCAGACAGTGGGTTTTCAACATTTGAGGAGCCTTTGTTCAGTCTGGCCAGACACAACGTGGAGTCCAAGCACTGTAGCCTGGAAGACGTCTGGAATCAAGACTTGTGACACAAGCAATGTGACACAGTAAAGACAATCCGGGAATTTAACGCCGCAATGAGACGTTAACAAGAAAAGGCCTTAGACTGTTCAGATGAGCAGTGGAACGCCCAGTGTTCACTGCTGGGCTGTCTCGCTCCACCACCTGCGCCAAATTCCATCTCCAAAGATTTAAGGTGGTGGGAATCATCCAGGGAATGTTGACAGAGACTGGAATCACGTAGGGAATCCgttttagggcattttcacacttaTATTTGGTTTGCTCTGGCCTGTGTCAGTTAACATTTaccccttggtttggtttgttaccacaaagaagataaaaaagatgcaagtgcacaaaaaaacacacgtCACAACAAACCATGATATGTGATACGTGATACCTCtccttctttatttttactggtGGGACCTGTCtggagcaaagaaagaaaataaatacaagaagaagg
>XM_022672760.1
ATCCCACACTCATGGTCAACATGAGCTGTAAAGCctctgaaacataaaaaaaaaaaatcttcttaacTAGTCCAGGGGGACCACTGAGAGCTGGAGGAGAGAAAACTGTTTTGGGGGGTCCCTGCGCACGTGGGTGCGTGTGTTCAATCTAGCCCCTGTGTGGTCCAGCTGAGGCCATGGCTTCGTCTCTGGATGGCGGCTGGTCCTGGGTCATCGTGCTGGCCTCCTTCATGGCCCAGCTGCTGGCGTTTGGCTCGCCCCAGTCGGTGGGAGTCCTGTACCCGGAGTGGCTCAACGCCTTCCATGAGGGCAAGGGCACCACCGCGTGGGTGGGCTCCCTGGTGTCAGGAGTGGCACTCATTGCAAgtccgCTGTGCAGTGCGTGTGTGGATAATTTTGGTGCTCGGCCGGTCACTATCTTCAGTGGAGTGATGGTGGCGGGGGGGCTGATGCTCAGCGCCTTCGCTCCTAACGTCTCCTTCCTCATCTTCTCCTACGGCATCGTCGTCGGAATGGGCTGTGGTCTTGTCTATGCAGCTACTCTGACCATCACCTGTCAGTATTTTGACAAGAGGCGTGGCCTCGCACTGGGCATTGTTACCACAGGGACCAGCGCCGGGGGCTTTCTGTACGCCACAGTGCAGAACGAGCTGATTGAGCTGTTCGGATTGGACGGCTGCCTGCTGATTGTCGGCGCTCTGGCTCTGAACCTGATGGCATGCGCCGGCCCCATGCGCCCCTTAAACCTTCCTGGTTATTACCTCAAACAGAAGGCCGCTCTGGAGCACAAGGACGGACCACTCTACGAGAAGCCCATCGTCATCATTGACTCCAGTGCCACGGAAAGCTCCGCCCACAAGTCACCAGTAAAGGAGCTCCTGATTTCAATGGAGACTGGCGAACCGGGGGCAGAGCCTGTGTGTACTCAAGTGGTACGGGTCATCAAAAGGCGCCTCCGGCCGCAGGTGGAATACCTTCACACGATGGGGGAATATTTCCAGGACCGCACCTTCACGGCCTTCTGCATCTCCTTATTCCTCTTCAGCCTGGGAGCTTTCCCACCTGTACTGTTCATGGAGGACGTGGCCCAGAGCGAGGGCCTCATTGAGCATGTGGCCATCATTCCACTTGTTTCCATAGTTGCCTTGGCAACCGGAGTGGGCAAGTTGATTCTCGGAGCCCTGGTGGACATGAGGTGGGTGAGCGGCCTGCTCCTCTATGCCCTGACGGTAGTGGGCACTGGTGTGGCGCTGCTGCTGGTGCCAGGGTGGAAGAGCTACCTGGGACTGCAGGTGCTTTCTGCTGCTCTCGGCTTTTTCTCGGGCAACTGGTCGCTCACGTCCTACATCACCACTCGCATCGTAGGCATCGAGCGCCTCAGCCAGGCTCATGGTGTCCTCATGTGCTTCGGGGGCTTTGGGATCATGTTGGGACCTCCTGTCGTAGgCTGGTTCTACGACTGGACCCAGTCATACGACCTGGCGTTCTACTTCAGTGGGTGCTGTGTGGTGCTGGGAGGCCTGATTCTGTTTCTGGCTGCCCTGCCCTGCTGGGACCAGAGGGAGAAAGCGAGGAATGTTCCTGAGATTGATCCAGATAAACAAAACCCATCTGACTGTGATAAAGTGGCTTCTGTGGCCTGAAGTGCAGGATCAGCCAAGTACACACTTCAGACTTAGCCTAATTATAGTCAGTCCAACCATGCTTGGTGCAGGGCTCCCGAGTGGGGTGACTGTCTAAGCGCTTGGTCTGTCTAGGTATCACTGGGAGATCATCGGTCAGTCTTTAGTGATGCCACAGCCCTCCGTGACTGGGAATCGCAGAGAGCATAACTGGACTCACAGCTTTCAGATTCTagtactgcttttggatttgtCTGTAtttctattacatttattagctttatcTCCAGTTTAGCTCCAGTGTAAAACTAAACACACAGCCTATGTATTTTCAAAcagctgtgtgatttttttttttttttttttttttggctaaacCACAAAAGTTTAGAGTAGCACTGGAGCCTGCCCTCTAGCCCTGACCCTTTCCTTATTGCAATGCCTTACTGCAGCCAAATAGTTCAGTATATATTGCAGTATACTGTAATGCTTTAAtttatcttctttctttctttatttcttgctTTACCAGTAAGCCTGGCTAGCTCTAGCTAGACAACTCTTTTTCAGTGCCAGATTTGAccagagaaacacacaaacagactgATTTTTCACTGATTTTGAATGCaatttgtatgtgtttgtatagTTTCTAGagatgttttaattttagtatGTATCTATTTTATGTATCTCGTAcctgtaaactaataattactGCCTCATTTATGGAGGCCCATCAGCAGTGGCAACAGTGTACTAGTAGTCAGTTAGCAGACAGTGGGTTTTCAACATTTGAGGAGCCTTTGTTCAGTCTGGCCAGACACAACGTGGAGTCCAAGCACTGTAGCCTGGAAGACGTCTGGAATCAAGACTTGTGACACAAGCAATGTGACACAGTAAAGACAATCCGGGAATTTAACGCCGCAATGAGACGTTAACAAGAAAAGGCCTTAGACTGTTCAGATGAGCAGTGGAACGCCCAGTGTTCACTGCTGGGCTGTCTCGCTCCACCACCTGCGCCAAATTCCATCTCCAAAGATTTAAGGTGGTGGGAATCATCCAGGGAATGTTGACAGAGACTGGAATCACGTAGGGAATCCgttttagggcattttcacacttaTATTTGGTTTGCTCTGGCCTGTGTCAGTTAACATTTaccccttggtttggtttgttaccacaaagaagataaaaaagatgcaagtgcacaaaaaaacacacgtCACAACAAACCATGATATGTGATACGTGATACCTCtccttctttatttttactggtGGGACCTGTCtggagcaaagaaagaaaataaatacaagaagaagg

Function

NR:

description
PREDICTED: monocarboxylate transporter 9-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08186 SLC16A9; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672759.1 False 2879 mRNA 0.51 6 14496597 14511030
XM_022672760.1 True 2952 mRNA 0.50 6 14495258 14511030

Neighbor

gene id symbol gene type direction distance location
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 16359 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 134022 14289248 ~ 14361236 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding upstream 377608 14114066 ~ 14117650 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding upstream 384431 14107619 ~ 14110827 (+)
zmpste24 zmpste24,LOC107654896,LOC107583569,LOC107715979,LOC107670834,LOC107583239 coding upstream 392832 14090456 ~ 14102426 (+)
entpd6 entpd6 coding downstream 184563 14695593 ~ 14722677 (+)
LOC111193201 NA coding downstream 252540 14763570 ~ 14766023 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 325452 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 381397 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 513439 15024469 ~ 15152481 (+)
G80500 NA non-coding upstream 431662 14057421 ~ 14063596 (+)
G80494 NA non-coding upstream 448313 14045379 ~ 14046945 (+)
G80388 NA non-coding upstream 758158 13687025 ~ 13737100 (+)
G80386 NA non-coding upstream 833463 13661400 ~ 13661795 (+)
G80359 NA non-coding upstream 1005044 13463375 ~ 13490214 (+)
G80578 NA non-coding downstream 62552 14573582 ~ 14574902 (+)
G80580 NA non-coding downstream 66294 14577324 ~ 14579064 (+)
G80588 bicc1,LOC108431656 non-coding downstream 82069 14593099 ~ 14607530 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding downstream 129087 14640117 ~ 14646367 (+)
G80662 NA non-coding downstream 310725 14821755 ~ 14822248 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 543060 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 688231 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2215752 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 2419047 12064844 ~ 12076211 (+)
G79717 NA other upstream 2589873 11901095 ~ 11905385 (+)
LOC103028846 LOC108431654 other downstream 2380 14513410 ~ 14534923 (+)
G80648 NA other downstream 214897 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 219478 14730508 ~ 14798604 (+)
LOC111193140 NA other downstream 277572 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 295285 14806315 ~ 14835079 (+)

Expression


Co-expression Network