LOC111193201


Basic Information

Item Value
gene id LOC111193201
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14763570 ~ 14766023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672768.1
CTGAGCTTGCAGCTTTTGATGCCAAATTAAGGGTTTATGAAGAGTTTGAAGATGCTCATGAATCCATGGATGATCTCTCTGAGCCAGTTTCAAGGACCAGAGCTGGGTCTAGGTGTACGACTGGTAGAAGAGGAAAGCTAGAAGTTGCTGATAATGAGCATCATGGAGCTGGTAAGACTTTCCCTGCTTCTGATGCTAAGAGAGCTGCAGCAGATATTTCTTCAGTTAGAAGAAAATCTTCACCCAGACGTCTGACTGATAACACACAGCATTCTGAGTCTAGTGATGACCTGTACCACGTACTGCAGCGTCAAAATGAGGTCACTGAGATGCTCATCAAGCAACAAAGTCTGTCTCAACTACCGCACAGAGACGTACCAGTGTTCAATGGAGATCCTATTACATACAGATCTTTTATAAGAGCCTTTGAGCACACCATTGATAGCAAGACTGACAGCCATCAACATCGGTTGTATTACTTGGAACAGTTTACGAGTGGGGAGCCACTTGATCTCATTCGTAGCTGTGAGCACATGAGGCCAGACAGGGCTTATATAGAAGCCAGAGCATTGCTGGAACGTCACTACGGCGACGAACTGACAATTGCCAATTCCTATATCAAGAAGGCAATGGAATGGCCACAAATAAAGCCAGAGGATAGAAAAGTATTAAAAACcttcactttgtttttaattggatgTTCTAACACAGTGAATGATGTGGACTATATGGATGAGATGAACAATCCTACAAACATGAAGTGCATCTTATCCAAGCTTCCATTCAAGCTGAAAGAAAAATGGAGACGTTTCGCTTTTGACattcaagaaagaaagaaaaaacgagCCAAGTTTCCAGATCTGGTGGACTTTGTGTATCATCAAGCCAAAGTTGCAAATGATCCACTGTTTGGAGACATTCTGGACACCACCTCAGGTAACCAGGGAAACTCAAAGAAGAAGACAAATATAAGAAAAACTGAGTCCAAAAGGAGCAGCTTTGCTGTGAGTGTGTCTACTACTGACAAGGACACCACTAGAGGACAACCAGAAAGGACATCTCCAGCAGTTAAGTCAGCCAGTGCTTTCCAAAGTCCATGTTTGTACTGTAAGAAGAATCATTCACTGAATGTATGCCACAAGATCAAAGATCAGCCTTTGAAAGAAAAAATTGAGTTCCTGAAATCGCAAGGTCTTTGCTTTGGATGTCTTACAGCAGGCCATTTGTCTAAGGACTGTAAGAAAAGGATTTCATGCCCAGACGGTTCCTTTAAGCATCCTGCTATCCTGCATGTGGTAAAAGACGATCCTGCATCAGAGAAGAACAGTGCAGGAGACAACGCACAAGGAAAAGCTGAGGTAACAAATGCTCTTGTGTCTGCAGGGTGTAGAAGAAGTGAACATACTGGGGCCGGGAACAATGCATATATACTTCCCATTGTACCTGTGCAAATAAAACACAAGAATGGAGCAAgaattattaaaacatacatatttcTGGATCAAGGAAGTACAGCGACCTTTTGCACCGAGGACCTGGCAAAGAAGTTGAACATCCGAGGTAAAAAGTCAGAGTACCTGCTTCACACAATGTCACAGGAACAAAAAGTGAGCAGTTATGTTCTAACAGATCTAGAGGTGTGTGGCTTAGATGGACAAGACTACATCAAGCTGCCCAATGTGTATACACACCCAGACATACCTGCAAAGAGAGCCAATATACCACAGAGAAAGGATTTGGAGAAATGGTCTTACTTGAATCGAGTCCATCTCCCAAAACTAGAATCAGAAATCGGTCTTCTCATTGGTGCTAACGCCTACAAAGCTATGGAGCCGTGGGAGATAATCAACAGCCGAAATGATGGGCCATATGCTGTGAAGACTGCTCTAGGTTGGGTAGTCAATGGGCCAGTCAGCAGATGCCAAGAGAAGGAATCTGATGATGTTGAAAGACAGAGTTTCTTTGTAAACCGCATCTCTTTAATGAGCATTGAGAACATGTTGATGAGGCATTATGATGCTGATTTTCCAGAACGCCGATGTGAGGACAAGCAAGAGCCATCACAACATGACAAGCAGTTTATGCACACTGCGGAAGCTGAGGGTCGTCTTTGACTGCACGGCAACATACCAGGGAGTGTCGTTAAATGACCAACTGCTACAAGGACCTGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672768.1 True 2173 mRNA 0.43 2 14763570 14766023

Neighbor

gene id symbol gene type direction distance location
entpd6 entpd6 coding upstream 40893 14695593 ~ 14722677 (+)
LOC103027375 LOC108431653 coding upstream 252540 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 284671 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 402334 14289248 ~ 14361236 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding upstream 645920 14114066 ~ 14117650 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 70459 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 126404 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 258446 15024469 ~ 15152481 (+)
LOC111193204 NA coding downstream 741357 15507380 ~ 15542286 (+)
eno4 NA coding downstream 916350 15682373 ~ 15704118 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding upstream 117203 14640117 ~ 14646367 (+)
G80588 bicc1,LOC108431656 non-coding upstream 156040 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 184506 14577324 ~ 14579064 (+)
G80578 NA non-coding upstream 188668 14573582 ~ 14574902 (+)
G80500 NA non-coding upstream 699974 14057421 ~ 14063596 (+)
G80662 NA non-coding downstream 55732 14821755 ~ 14822248 (+)
G80663 NA non-coding downstream 56853 14822876 ~ 14865363 (+)
LOC111193202 NA non-coding downstream 197210 14963233 ~ 14969945 (+)
G80674 NA non-coding downstream 198056 14964079 ~ 14964754 (+)
G80745 NA non-coding downstream 325169 15091192 ~ 15093209 (+)
G80648 NA other upstream 34771 14725927 ~ 14728799 (+)
LOC103028846 LOC108431654 other upstream 228647 14513410 ~ 14534923 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 811372 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 956543 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2484064 12223277 ~ 12279506 (+)
LOC111193140 NA other downstream 22579 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 40292 14806315 ~ 14835079 (+)
LOC111193203 NA other downstream 408512 15174535 ~ 15203787 (+)
G80857 NA other downstream 797964 15563987 ~ 15583331 (+)
cmpk2 cmpk2 other downstream 3261284 18027307 ~ 18037074 (+)

Expression


Co-expression Network